CmoCh04G025470 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGAAAGAAAACACCTTCAACTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCGAAAAGCCGCCGCCGCCGCAGCACCGCCCCGTCATAATCTACACCGACTCCCCCAAGATCATCCACACCAATCCTACCCAATTTAAGGACTTAGTCCAACGCCTCACTGGCTGCCAACCTGATACTCCTGACATTCATCAGGTCCAATCCAAGACAATATCAATGTCTATGTCGATGCCAACGAGTAGTACCGAACAAGGAGTCGAGAGTGTAGGTTGTTTCCCAACTGGGATATTACCTCCGACGTCGGAGTTGCTACTACCCATTATGCCAATGCCGCCATCGGCGTCAACGGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGCTCCATAGCTCCTAATAATTTTGCATCGTCGCTAGATTTCTTCGATAACTTCCCTCATTTTCATTAA ATGGCTGAAAGAAAACACCTTCAACTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCGAAAAGCCGCCGCCGCCGCAGCACCGCCCCGTCATAATCTACACCGACTCCCCCAAGATCATCCACACCAATCCTACCCAATTTAAGGACTTAGTCCAACGCCTCACTGGCTGCCAACCTGATACTCCTGACATTCATCAGGTCCAATCCAAGACAATATCAATGTCTATGTCGATGCCAACGAGTAGTACCGAACAAGGAGTCGAGAGTGTAGGTTGTTTCCCAACTGGGATATTACCTCCGACGTCGGAGTTGCTACTACCCATTATGCCAATGCCGCCATCGGCGTCAACGGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGCTCCATAGCTCCTAATAATTTTGCATCGTCGCTAGATTTCTTCGATAACTTCCCTCATTTTCATTAA ATGGCTGAAAGAAAACACCTTCAACTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCGAAAAGCCGCCGCCGCCGCAGCACCGCCCCGTCATAATCTACACCGACTCCCCCAAGATCATCCACACCAATCCTACCCAATTTAAGGACTTAGTCCAACGCCTCACTGGCTGCCAACCTGATACTCCTGACATTCATCAGGTCCAATCCAAGACAATATCAATGTCTATGTCGATGCCAACGAGTAGTACCGAACAAGGAGTCGAGAGTGTAGGTTGTTTCCCAACTGGGATATTACCTCCGACGTCGGAGTTGCTACTACCCATTATGCCAATGCCGCCATCGGCGTCAACGGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGCTCCATAGCTCCTAATAATTTTGCATCGTCGCTAGATTTCTTCGATAACTTCCCTCATTTTCATTAA MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH Homology
BLAST of CmoCh04G025470 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08 Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 0
BLAST of CmoCh04G025470 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2) HSP 1 Score: 59.7 bits (143), Expect = 3.4e-08 Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of CmoCh04G025470 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 6.5e-07 Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 0
BLAST of CmoCh04G025470 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 4.6e-05 Identity = 37/100 (37.00%), Postives = 44/100 (44.00%), Query Frame = 0
BLAST of CmoCh04G025470 vs. ExPASy TrEMBL
Match: A0A6J1H588 (protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111460606 PE=4 SV=1) HSP 1 Score: 317.8 bits (813), Expect = 2.6e-83 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
BLAST of CmoCh04G025470 vs. ExPASy TrEMBL
Match: A0A6J1FKV1 (protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 7.1e-33 Identity = 95/163 (58.28%), Postives = 108/163 (66.26%), Query Frame = 0
BLAST of CmoCh04G025470 vs. ExPASy TrEMBL
Match: A0A6J1JW33 (protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 2.3e-31 Identity = 92/163 (56.44%), Postives = 107/163 (65.64%), Query Frame = 0
BLAST of CmoCh04G025470 vs. ExPASy TrEMBL
Match: A0A0A0KI80 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25 Identity = 91/177 (51.41%), Postives = 110/177 (62.15%), Query Frame = 0
BLAST of CmoCh04G025470 vs. ExPASy TrEMBL
Match: A0A5A7UZA1 (Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00830 PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 1.9e-25 Identity = 92/178 (51.69%), Postives = 108/178 (60.67%), Query Frame = 0
BLAST of CmoCh04G025470 vs. NCBI nr
Match: XP_022959576.1 (protein MKS1-like [Cucurbita moschata]) HSP 1 Score: 317.8 bits (813), Expect = 5.3e-83 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
BLAST of CmoCh04G025470 vs. NCBI nr
Match: KAG6602164.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 285.4 bits (729), Expect = 2.9e-73 Identity = 148/163 (90.80%), Postives = 149/163 (91.41%), Query Frame = 0
BLAST of CmoCh04G025470 vs. NCBI nr
Match: KAG7032856.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 281.6 bits (719), Expect = 4.2e-72 Identity = 147/162 (90.74%), Postives = 148/162 (91.36%), Query Frame = 0
BLAST of CmoCh04G025470 vs. NCBI nr
Match: XP_023542758.1 (protein MKS1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 261.9 bits (668), Expect = 3.5e-66 Identity = 138/162 (85.19%), Postives = 142/162 (87.65%), Query Frame = 0
BLAST of CmoCh04G025470 vs. NCBI nr
Match: KAG6578908.1 (Protein MKS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016429.1 Protein MKS1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 152.5 bits (384), Expect = 3.0e-33 Identity = 96/163 (58.90%), Postives = 109/163 (66.87%), Query Frame = 0
BLAST of CmoCh04G025470 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein ) HSP 1 Score: 60.1 bits (144), Expect = 1.9e-09 Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 0
BLAST of CmoCh04G025470 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 ) HSP 1 Score: 59.7 bits (143), Expect = 2.4e-09 Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of CmoCh04G025470 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein ) HSP 1 Score: 55.5 bits (132), Expect = 4.6e-08 Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 0
BLAST of CmoCh04G025470 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein ) HSP 1 Score: 51.6 bits (122), Expect = 6.7e-07 Identity = 39/101 (38.61%), Postives = 45/101 (44.55%), Query Frame = 0
BLAST of CmoCh04G025470 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding ) HSP 1 Score: 49.3 bits (116), Expect = 3.3e-06 Identity = 37/100 (37.00%), Postives = 44/100 (44.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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