CmoCh04G012220.1 (mRNA) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCTCTCATAGTTTGAACTGTCTCAAAGTTCCCTGAAACCTTAAACAAAAAGCAAACACTGTCATCAACATTCTCTTTCCCTCTCTTCTTTTGTTGGGTCCCTCTTCTCCTTCTTCTCTTCCTTCAAATCCCAATTATTAAATCCCCCCTCTCCCCTTCTTCTTCACTCCAAAATTCCCAATTCCCCGTTTCTCCCTTTCTCTCTCCAACCATGGCCTCTGCCTCCAACTTCTCCCTCCCTCCCCACTTTTTATCCGACCACCATAACCTCCCCACCGACTTCCCTTATCACTTCAACTCCTCCCCTGTTCATTCCCCCCTCGGATCTGTTCTTGGCGATGACGACAACGACGACGACGCCGACTTTCTTGCCGCGTTGACGCACCGCCTTACTCACACCACTCTTCGTGATTCCATGAAACCTGCTGCTGTCCACAAACCCCAAGTACCCATCTTTTGATTTTTCTTTAATTCACTCGATTTTTGTCTCTTCAATGAGTTTTTCATTTACCGACGACTCTGTTTTTTTTTTTTTTTTTTTCTTCAGGCTAAGACGGCCATGGCTAGTTCTCCTCAGTCTACTCTTAGTGGGTTTGGGAGTTGGTCGGCTTGGAGCTCGGTGTCGAGCGACGGAAGCCCAAACGGGCCGTCTCAGGCGCCGTCTCCTCCGACCACTCCTTTCGGCGGCGATGAAGACACTTGGGATCTTATCTATGCTGCTGCAGGGCAAGTTGCGAGACTCAAAATGAACACTCAAAGAGATGGGATTATTGGTCCTTCTCAAAGTTCTTCAAAGCTTGCTTCTTCCATGAGAAACGCTGGATTTTACTCCCACCCTTCACAGGTGAAGCTAAATTAGCCTCGTTTTTTTCACTCCCTTGTTCTCTGTTTTTTATCTGTAATCGTTTAACTCTGTTTTCTCCTCTGTTTTCAGTTCGGCACAGAGCCTCCGATTAATAAACAGGAAAGCTGTTTAAACTGGGGGAGACAAGTGAAGGTTGAGAATCAACAGATCTATTGCCGAGGGGGAGATTTTCCCCATGAACATGGGAATTTTGTTCGTGCTGTGGATTTTCCTCAATCCGCTTGGCCTTCTCTGCATCCCCATCACCGGAGAAACCCTTCTCAGCCTAGTACTCCCGCTGTATCTGCCGCCTACCACGGCAGCGGATCGGCCCCCAAAAAGGAGTGCACAGGTACTGGCGTCTTCTTGCCTCGCCGATACGACAACAACCCACCACAATCTCGCAAAAGAGCAGGTACTTTTGTTTCTTCTTTTATCAAATTGGAAATCTCGGATTCTCGAATTTGAACTTGATTCTTAACTTTTGCTCTGTTTCTTCAGACTGTGGCTCGATTACTCTGCTTCCAGGGAAGAACGTTCAAGACTTCAACCGATCTGTTCCCCAGATGACGTCAAATCGCCGCCTTCCACCGTGCTACGGTGAGCATGTGGAAACAATTCAAACATCTTGAGATCTGTTAAATAGTAATATGCTAATGAGCTTTTATTATTATTATTATTTTTTTATTTTCTTCAGAAGCTTTAATGGCTCAAAGAAACGCCATTTTCGCACAGCAGAGGCTGAGTTATTCCCGGCCGGCAGAAAGAGGCCAAAGCCATGAGTTTCTTCTTCCTCAGGAGTGGACATACTAAAGCAAACAAAACTACTGGAAGTTGAAAAAAAAAGTGCTTTTTCATTGGGAAGATTGAAGTGTTCTTTCTTTTAGAATAGGGAACAATAAAGATATGAATTAAGGGTTGTAACTTAAAGATGGAAGAAGGATTTGTTTGCAGGTTTGTAGTTACCAGTTAGGTCTCATTAGATGGAGAACAGAGTAAAAATGCAGCGTTCATTCATCAGAAAGGGGGGAAACAGAGAAAAAGAGAGTAATTTATAGGAAAGTGGGGACTTGGGGACAGAGAGATATTGTAATAATTTTTGTGGGTTTCTTAATTGAAACATATAGCTATAGTATGTAGCTATAGAGACCCTTCTAATATAAATAAACTATTTGTTGATTTATGTGTAGAAGCAAGAGCTTCTTATTTGTTGATAAACATTGGTTAGTATTAAAGTTTGAATCGTTAACTTTGTGATTTAATATATGTTCTTTTTTCCTCC CTCTCTCATAGTTTGAACTGTCTCAAAGTTCCCTGAAACCTTAAACAAAAAGCAAACACTGTCATCAACATTCTCTTTCCCTCTCTTCTTTTGTTGGGTCCCTCTTCTCCTTCTTCTCTTCCTTCAAATCCCAATTATTAAATCCCCCCTCTCCCCTTCTTCTTCACTCCAAAATTCCCAATTCCCCGTTTCTCCCTTTCTCTCTCCAACCATGGCCTCTGCCTCCAACTTCTCCCTCCCTCCCCACTTTTTATCCGACCACCATAACCTCCCCACCGACTTCCCTTATCACTTCAACTCCTCCCCTGTTCATTCCCCCCTCGGATCTGTTCTTGGCGATGACGACAACGACGACGACGCCGACTTTCTTGCCGCGTTGACGCACCGCCTTACTCACACCACTCTTCGTGATTCCATGAAACCTGCTGCTGTCCACAAACCCCAAGCTAAGACGGCCATGGCTAGTTCTCCTCAGTCTACTCTTAGTGGGTTTGGGAGTTGGTCGGCTTGGAGCTCGGTGTCGAGCGACGGAAGCCCAAACGGGCCGTCTCAGGCGCCGTCTCCTCCGACCACTCCTTTCGGCGGCGATGAAGACACTTGGGATCTTATCTATGCTGCTGCAGGGCAAGTTGCGAGACTCAAAATGAACACTCAAAGAGATGGGATTATTGGTCCTTCTCAAAGTTCTTCAAAGCTTGCTTCTTCCATGAGAAACGCTGGATTTTACTCCCACCCTTCACAGTTCGGCACAGAGCCTCCGATTAATAAACAGGAAAGCTGTTTAAACTGGGGGAGACAAGTGAAGGTTGAGAATCAACAGATCTATTGCCGAGGGGGAGATTTTCCCCATGAACATGGGAATTTTGTTCGTGCTGTGGATTTTCCTCAATCCGCTTGGCCTTCTCTGCATCCCCATCACCGGAGAAACCCTTCTCAGCCTAGTACTCCCGCTGTATCTGCCGCCTACCACGGCAGCGGATCGGCCCCCAAAAAGGAGTGCACAGGTACTGGCGTCTTCTTGCCTCGCCGATACGACAACAACCCACCACAATCTCGCAAAAGAGCAGACTGTGGCTCGATTACTCTGCTTCCAGGGAAGAACGTTCAAGACTTCAACCGATCTGTTCCCCAGATGACGTCAAATCGCCGCCTTCCACCGTGCTACGAAGCTTTAATGGCTCAAAGAAACGCCATTTTCGCACAGCAGAGGCTGAGTTATTCCCGGCCGGCAGAAAGAGGCCAAAGCCATGAGTTTCTTCTTCCTCAGGAGTGGACATACTAAAGCAAACAAAACTACTGGAAGTTGAAAAAAAAAGTGCTTTTTCATTGGGAAGATTGAAGTGTTCTTTCTTTTAGAATAGGGAACAATAAAGATATGAATTAAGGGTTGTAACTTAAAGATGGAAGAAGGATTTGTTTGCAGGTTTGTAGTTACCAGTTAGGTCTCATTAGATGGAGAACAGAGTAAAAATGCAGCGTTCATTCATCAGAAAGGGGGGAAACAGAGAAAAAGAGAGTAATTTATAGGAAAGTGGGGACTTGGGGACAGAGAGATATTGTAATAATTTTTGTGGGTTTCTTAATTGAAACATATAGCTATAGTATGTAGCTATAGAGACCCTTCTAATATAAATAAACTATTTGTTGATTTATGTGTAGAAGCAAGAGCTTCTTATTTGTTGATAAACATTGGTTAGTATTAAAGTTTGAATCGTTAACTTTGTGATTTAATATATGTTCTTTTTTCCTCC ATGGCCTCTGCCTCCAACTTCTCCCTCCCTCCCCACTTTTTATCCGACCACCATAACCTCCCCACCGACTTCCCTTATCACTTCAACTCCTCCCCTGTTCATTCCCCCCTCGGATCTGTTCTTGGCGATGACGACAACGACGACGACGCCGACTTTCTTGCCGCGTTGACGCACCGCCTTACTCACACCACTCTTCGTGATTCCATGAAACCTGCTGCTGTCCACAAACCCCAAGCTAAGACGGCCATGGCTAGTTCTCCTCAGTCTACTCTTAGTGGGTTTGGGAGTTGGTCGGCTTGGAGCTCGGTGTCGAGCGACGGAAGCCCAAACGGGCCGTCTCAGGCGCCGTCTCCTCCGACCACTCCTTTCGGCGGCGATGAAGACACTTGGGATCTTATCTATGCTGCTGCAGGGCAAGTTGCGAGACTCAAAATGAACACTCAAAGAGATGGGATTATTGGTCCTTCTCAAAGTTCTTCAAAGCTTGCTTCTTCCATGAGAAACGCTGGATTTTACTCCCACCCTTCACAGTTCGGCACAGAGCCTCCGATTAATAAACAGGAAAGCTGTTTAAACTGGGGGAGACAAGTGAAGGTTGAGAATCAACAGATCTATTGCCGAGGGGGAGATTTTCCCCATGAACATGGGAATTTTGTTCGTGCTGTGGATTTTCCTCAATCCGCTTGGCCTTCTCTGCATCCCCATCACCGGAGAAACCCTTCTCAGCCTAGTACTCCCGCTGTATCTGCCGCCTACCACGGCAGCGGATCGGCCCCCAAAAAGGAGTGCACAGGTACTGGCGTCTTCTTGCCTCGCCGATACGACAACAACCCACCACAATCTCGCAAAAGAGCAGACTGTGGCTCGATTACTCTGCTTCCAGGGAAGAACGTTCAAGACTTCAACCGATCTGTTCCCCAGATGACGTCAAATCGCCGCCTTCCACCGTGCTACGAAGCTTTAATGGCTCAAAGAAACGCCATTTTCGCACAGCAGAGGCTGAGTTATTCCCGGCCGGCAGAAAGAGGCCAAAGCCATGAGTTTCTTCTTCCTCAGGAGTGGACATACTAA MASASNFSLPPHFLSDHHNLPTDFPYHFNSSPVHSPLGSVLGDDDNDDDADFLAALTHRLTHTTLRDSMKPAAVHKPQAKTAMASSPQSTLSGFGSWSAWSSVSSDGSPNGPSQAPSPPTTPFGGDEDTWDLIYAAAGQVARLKMNTQRDGIIGPSQSSSKLASSMRNAGFYSHPSQFGTEPPINKQESCLNWGRQVKVENQQIYCRGGDFPHEHGNFVRAVDFPQSAWPSLHPHHRRNPSQPSTPAVSAAYHGSGSAPKKECTGTGVFLPRRYDNNPPQSRKRADCGSITLLPGKNVQDFNRSVPQMTSNRRLPPCYEALMAQRNAIFAQQRLSYSRPAERGQSHEFLLPQEWTY Homology
BLAST of CmoCh04G012220.1 vs. ExPASy TrEMBL
Match: A0A6J1GY57 (uncharacterized protein LOC111458270 OS=Cucurbita moschata OX=3662 GN=LOC111458270 PE=4 SV=1) HSP 1 Score: 734.2 bits (1894), Expect = 2.6e-208 Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 0
BLAST of CmoCh04G012220.1 vs. ExPASy TrEMBL
Match: A0A6J1IIE5 (uncharacterized protein LOC111477184 OS=Cucurbita maxima OX=3661 GN=LOC111477184 PE=4 SV=1) HSP 1 Score: 704.5 bits (1817), Expect = 2.2e-199 Identity = 343/356 (96.35%), Postives = 346/356 (97.19%), Query Frame = 0
BLAST of CmoCh04G012220.1 vs. ExPASy TrEMBL
Match: A0A5A7UBI2 (WAS/WASL-interacting protein family member 2, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00180 PE=4 SV=1) HSP 1 Score: 534.3 bits (1375), Expect = 4.0e-148 Identity = 274/367 (74.66%), Postives = 297/367 (80.93%), Query Frame = 0
BLAST of CmoCh04G012220.1 vs. ExPASy TrEMBL
Match: A0A1S3CN19 (uncharacterized protein LOC103502654 OS=Cucumis melo OX=3656 GN=LOC103502654 PE=4 SV=1) HSP 1 Score: 534.3 bits (1375), Expect = 4.0e-148 Identity = 274/367 (74.66%), Postives = 297/367 (80.93%), Query Frame = 0
BLAST of CmoCh04G012220.1 vs. ExPASy TrEMBL
Match: A0A0A0KQD2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G189920 PE=4 SV=1) HSP 1 Score: 520.4 bits (1339), Expect = 6.0e-144 Identity = 269/367 (73.30%), Postives = 294/367 (80.11%), Query Frame = 0
BLAST of CmoCh04G012220.1 vs. NCBI nr
Match: XP_022956575.1 (uncharacterized protein LOC111458270 [Cucurbita moschata]) HSP 1 Score: 734.2 bits (1894), Expect = 5.4e-208 Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 0
BLAST of CmoCh04G012220.1 vs. NCBI nr
Match: KAG6600965.1 (hypothetical protein SDJN03_06198, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031586.1 hypothetical protein SDJN02_05627 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 712.2 bits (1837), Expect = 2.2e-201 Identity = 347/356 (97.47%), Postives = 348/356 (97.75%), Query Frame = 0
BLAST of CmoCh04G012220.1 vs. NCBI nr
Match: XP_022976981.1 (uncharacterized protein LOC111477184 [Cucurbita maxima]) HSP 1 Score: 704.5 bits (1817), Expect = 4.6e-199 Identity = 343/356 (96.35%), Postives = 346/356 (97.19%), Query Frame = 0
BLAST of CmoCh04G012220.1 vs. NCBI nr
Match: XP_038893422.1 (uncharacterized protein LOC120082215 [Benincasa hispida]) HSP 1 Score: 575.5 bits (1482), Expect = 3.2e-160 Identity = 291/367 (79.29%), Postives = 309/367 (84.20%), Query Frame = 0
BLAST of CmoCh04G012220.1 vs. NCBI nr
Match: XP_023535272.1 (uncharacterized protein LOC111796750 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 545.0 bits (1403), Expect = 4.7e-151 Identity = 266/274 (97.08%), Postives = 266/274 (97.08%), Query Frame = 0
BLAST of CmoCh04G012220.1 vs. TAIR 10
Match: AT2G39870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55690.1); Has 73 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 85.5 bits (210), Expect = 9.4e-17 Identity = 110/347 (31.70%), Postives = 155/347 (44.67%), Query Frame = 0
BLAST of CmoCh04G012220.1 vs. TAIR 10
Match: AT3G55690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39870.1); Has 76 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 3; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 82.8 bits (203), Expect = 6.1e-16 Identity = 91/301 (30.23%), Postives = 130/301 (43.19%), Query Frame = 0
BLAST of CmoCh04G012220.1 vs. TAIR 10
Match: AT5G59050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 57.8 bits (138), Expect = 2.1e-08 Identity = 94/370 (25.41%), Postives = 147/370 (39.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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