CmoCh02G016640.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G016640.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-H2 finger protein ATL29-like
Location	Cmo_Chr02: 9570003 .. 9570908 (-)
Sequence length	906
RNA-Seq Expression	CmoCh02G016640.1
Synteny	CmoCh02G016640.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACCGATTTGACTCGCATTCCTTTCCCCTCACAAGACCACGCCAGTCCTCCTGTCACCATTGTCCTCACACTCATCCTCGTTGCCTTCCTCTTCGTCGGTTTCTTCTCCATCTACTGCTGCCGCTGCGTTGTGGACTCCTTCCTCCATTCCCGCAACGTCCGCCGCTCCACCTCCGGCAACCTTCTCCACCCTTCCAACGATTCCCCTGCCGCCCCTACTGGCCTCGACCCACTTCTCATCAACTCCTTTCCCACTTTCCCATATTCCAAAATCAAGGAATTTCGCAGTGACAATGTGGGATTAGAATGCGCCATTTGCCTTCTCGAATTCAACGACGAGAGCTTCCTTCGCCTTCTCACTGTTTGCTACCATGTTTTCCATCAGGAGTGCATTGATCTCTGGCTCGAATCCCACAAGACCTGCCCTGTTTGCAGGAGAAATCTCGACTCCGATTTGCGGAGGAATTCTGCTGATAAGACCTCTGATCCACCACGAACTTCCCACCGTGAGTCAATTGAAGATGCTATTAGTATTGATATTGATGAGGACGCCGACGCCGATGCCGATTCCGATGCCGATGACAATGAGGGCTCTTGTTCGAACAAGGGAAAACAGAGGATTGAAACAGAGGAGGTGGAGAAGGAAGAGAGTAGGAAGAAATTCTCGAGATCGCATTCGACAGGGCATTCGATTGTGAAGGCGAAAAGAGAAGGAGAAAGTCGGCATAAGTTGATATTACCGGAGCACGTGAAGATTAAGATTCTAAGAGGACATAATTGGACGGGGAGTTGCGTGACATTTGAGGAGTTGGCGAGGAACCCTAGCAATGGCGGTGGGTTTTCAAAGCTCTGTGAAAGGGGTGATCGGAATAACTTGCAGAAGCCGGCATGTTCAGTTTGA

mRNA sequence

ATGTCCACCGATTTGACTCGCATTCCTTTCCCCTCACAAGACCACGCCAGTCCTCCTGTCACCATTGTCCTCACACTCATCCTCGTTGCCTTCCTCTTCGTCGGTTTCTTCTCCATCTACTGCTGCCGCTGCGTTGTGGACTCCTTCCTCCATTCCCGCAACGTCCGCCGCTCCACCTCCGGCAACCTTCTCCACCCTTCCAACGATTCCCCTGCCGCCCCTACTGGCCTCGACCCACTTCTCATCAACTCCTTTCCCACTTTCCCATATTCCAAAATCAAGGAATTTCGCAGTGACAATGTGGGATTAGAATGCGCCATTTGCCTTCTCGAATTCAACGACGAGAGCTTCCTTCGCCTTCTCACTGTTTGCTACCATGTTTTCCATCAGGAGTGCATTGATCTCTGGCTCGAATCCCACAAGACCTGCCCTGTTTGCAGGAGAAATCTCGACTCCGATTTGCGGAGGAATTCTGCTGATAAGACCTCTGATCCACCACGAACTTCCCACCGTGAGTCAATTGAAGATGCTATTAGTATTGATATTGATGAGGACGCCGACGCCGATGCCGATTCCGATGCCGATGACAATGAGGGCTCTTGTTCGAACAAGGGAAAACAGAGGATTGAAACAGAGGAGGTGGAGAAGGAAGAGAGTAGGAAGAAATTCTCGAGATCGCATTCGACAGGGCATTCGATTGTGAAGGCGAAAAGAGAAGGAGAAAGTCGGCATAAGTTGATATTACCGGAGCACGTGAAGATTAAGATTCTAAGAGGACATAATTGGACGGGGAGTTGCGTGACATTTGAGGAGTTGGCGAGGAACCCTAGCAATGGCGGTGGGTTTTCAAAGCTCTGTGAAAGGGGTGATCGGAATAACTTGCAGAAGCCGGCATGTTCAGTTTGA

Coding sequence (CDS)

ATGTCCACCGATTTGACTCGCATTCCTTTCCCCTCACAAGACCACGCCAGTCCTCCTGTCACCATTGTCCTCACACTCATCCTCGTTGCCTTCCTCTTCGTCGGTTTCTTCTCCATCTACTGCTGCCGCTGCGTTGTGGACTCCTTCCTCCATTCCCGCAACGTCCGCCGCTCCACCTCCGGCAACCTTCTCCACCCTTCCAACGATTCCCCTGCCGCCCCTACTGGCCTCGACCCACTTCTCATCAACTCCTTTCCCACTTTCCCATATTCCAAAATCAAGGAATTTCGCAGTGACAATGTGGGATTAGAATGCGCCATTTGCCTTCTCGAATTCAACGACGAGAGCTTCCTTCGCCTTCTCACTGTTTGCTACCATGTTTTCCATCAGGAGTGCATTGATCTCTGGCTCGAATCCCACAAGACCTGCCCTGTTTGCAGGAGAAATCTCGACTCCGATTTGCGGAGGAATTCTGCTGATAAGACCTCTGATCCACCACGAACTTCCCACCGTGAGTCAATTGAAGATGCTATTAGTATTGATATTGATGAGGACGCCGACGCCGATGCCGATTCCGATGCCGATGACAATGAGGGCTCTTGTTCGAACAAGGGAAAACAGAGGATTGAAACAGAGGAGGTGGAGAAGGAAGAGAGTAGGAAGAAATTCTCGAGATCGCATTCGACAGGGCATTCGATTGTGAAGGCGAAAAGAGAAGGAGAAAGTCGGCATAAGTTGATATTACCGGAGCACGTGAAGATTAAGATTCTAAGAGGACATAATTGGACGGGGAGTTGCGTGACATTTGAGGAGTTGGCGAGGAACCCTAGCAATGGCGGTGGGTTTTCAAAGCTCTGTGAAAGGGGTGATCGGAATAACTTGCAGAAGCCGGCATGTTCAGTTTGA

Protein sequence

MSTDLTRIPFPSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRRSTSGNLLHPSNDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRLLTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDAISIDIDEDADADADSDADDNEGSCSNKGKQRIETEEVEKEESRKKFSRSHSTGHSIVKAKREGESRHKLILPEHVKIKILRGHNWTGSCVTFEELARNPSNGGGFSKLCERGDRNNLQKPACSV

Homology

[Close]

BLAST of CmoCh02G016640.1 vs. ExPASy Swiss-Prot
Match: O49691 (RING-H2 finger protein ATL29 OS=Arabidopsis thaliana OX=3702 GN=ATL29 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.3e-59
Identity = 126/269 (46.84%), Postives = 173/269 (64.31%), Query Frame = 0


Query: 11  PSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRR---STSGNLLHPS 70
           P Q + +PP+T++LT+IL+ F F+GFF++Y C+C +D+ + +  +     + S N L   
Sbjct: 14  PQQHYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHHGGDTVSDNPLQQP 73

Query: 71  NDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRLLTVCYHV 130
              P  P GL+  +INSFPTFPYS +K+ R +  GLECAICLLEF+ +  LRLLT CYHV
Sbjct: 74  EAPPVNP-GLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHV 133

Query: 131 FHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDAISIDIDEDAD 190
           FHQECIDLW ESH+TCPVCRR+LD             PP  + + ++++ I   I E +D
Sbjct: 134 FHQECIDLWFESHRTCPVCRRDLD-----------PPPPPENTKPTVDEMIIDVIQETSD 193

Query: 191 ADADSDADDNEGSCSNKGKQRIETEEVEKEES-RKKFSRSHSTGHSIVKAKREGESRHKL 250
            + D        +  +      +T  ++KE++  +KFSRSHSTGHSIV+ K E E ++ L
Sbjct: 194 DEEDDHHRQQTTTQIDTWPSSGQTSSIKKEQNLPEKFSRSHSTGHSIVRNKPEEEDKYTL 253

Query: 251 ILPEHVKIKILRGHNWTGSCVTFEELARN 276
            LPEHVKIK+ RGH+ T SCVTF EL RN
Sbjct: 254 RLPEHVKIKVTRGHSQTESCVTFAELIRN 270

[Close]

BLAST of CmoCh02G016640.1 vs. ExPASy Swiss-Prot
Match: Q9FIR0 (RING-H2 finger protein ATL30 OS=Arabidopsis thaliana OX=3702 GN=ATL30 PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.3e-51
Identity = 121/277 (43.68%), Postives = 163/277 (58.84%), Query Frame = 0


Query: 6   TRIPFPSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRN--VRRSTSGNL 65
           T +P+P Q ++ PP+ I+LT+IL+   F+GFF+IY C+C   +   + N         N 
Sbjct: 11  TTVPYPPQHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYHNGLPENQ 70

Query: 66  LHPSND--SPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDES-FLRL 125
           +    +   P    GL+P +I S+P FP+S +K+ R D  GLECAICLLEF +E   LRL
Sbjct: 71  IQAQQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRL 130

Query: 126 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDAISI 185
           LT CYHVFHQECID WLES+KTCPVCRRNLD +   N             +E I + I  
Sbjct: 131 LTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNAPENI------------KELIIEVIQE 190

Query: 186 DIDEDADADADSDADDNEGSCSNKGKQRIETEEVEKEESRKKFSRSHSTGHSIVKAKREG 245
           +  E+ D +  S +++   S  + G    + E +       KFSRS +TGHSIV+ K E 
Sbjct: 191 NAHENRDQEQTSTSNEVMLSRQSSGNNERKIETLP-----DKFSRSKTTGHSIVRNKPEE 250

Query: 246 ESRHKLILPEHVKIKILRGH--NWTGSCVTFEELARN 276
           E R+ L LP+HVKIK+ R H  N T SC++F EL RN
Sbjct: 251 EDRYTLRLPDHVKIKVTRRHNNNQTESCISFGELVRN 270

[Close]

BLAST of CmoCh02G016640.1 vs. ExPASy Swiss-Prot
Match: Q6NKR1 (RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.4e-36
Identity = 111/299 (37.12%), Postives = 155/299 (51.84%), Query Frame = 0


Query: 2   STDLTRIP----FPSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRR 61
           +T +  IP    FPS    S PVT+VLT +L+  +F GFFS++  + +++    + N++R
Sbjct: 4   TTSIDSIPATAVFPS---VSMPVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQR 63

Query: 62  STSGNLLHPSNDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESF 121
           +  G+L+H +  +P   TGLDP +I SFP F YS   +    N G ECAICL EF+DE  
Sbjct: 64  TPYGDLIHVA--TPPENTGLDPFIIRSFPVFHYSSATK---KNHGTECAICLSEFSDEDT 123

Query: 122 LRLLTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDA 181
           +RL+TVC H FH  CIDLW E HKTCPVCR  LD  +             +   ES  + 
Sbjct: 124 VRLITVCRHPFHSNCIDLWFELHKTCPVCRCELDPGM-----------IGSGRLESFHNT 183

Query: 182 ISIDIDEDADADADSDADDNEGSCSNKGKQRIETEEVEKEESRKKFSRSHSTGHSIVKAK 241
           ++I I        D + D+     +   K+ IE        S  +FSRSHSTGH +VK  
Sbjct: 184 VTITIQ-------DINHDEENPPTAGSSKRLIEA-------SAWRFSRSHSTGHFMVKT- 243

Query: 242 REGESRHKLILPEHVKIKILRGHNWTGSCVTFEELARNPSNGGGFSKLCERGDRNNLQK 297
                           +K  R H  TGSCV+F+EL R    G G+  L   GD +++ +
Sbjct: 244 ------------TDANVKSKRRHYQTGSCVSFDELTR--YEGAGWQWL---GDSSHISR 251

[Close]

BLAST of CmoCh02G016640.1 vs. ExPASy Swiss-Prot
Match: Q9LQM2 (RING-H2 finger protein ATL81 OS=Arabidopsis thaliana OX=3702 GN=ATL81 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.0e-29
Identity = 94/255 (36.86%), Postives = 132/255 (51.76%), Query Frame = 0


Query: 11  PSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRRSTS--GNLLHPSN 70
           P     S PVTIVLT  L+  +F GFFS + C C+    +   N  R+ +   NL+ PSN
Sbjct: 65  PVHTLVSSPVTIVLTGSLLFIIFTGFFSFFFCGCLFRKLMRIWNNHRNRNRPSNLIQPSN 124

Query: 71  DSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRLLTVCYHVF 130
             P    GLD  +I SFP +PYS +K+  +D    +C+ICL EF D+  +RL++ C H F
Sbjct: 125 --PPENLGLDSKIIESFPEYPYS-VKDHGTD----QCSICLTEFMDDDTIRLISTCNHSF 184

Query: 131 HQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTS------HRESI-EDAISID 190
           H  CIDLW E HKTCPVCRR LD +  R S +K  + P         H E +  D ++I 
Sbjct: 185 HTICIDLWFEGHKTCPVCRRELDVE-DRTSLEKPLEVPEIDLVRSEIHDEPLPRDTVTII 244

Query: 191 IDEDADADADSDADDNEGSCSNKGKQRIETEEVEKEESRKKFSRSHSTGHSIVKAKREGE 250
           + E+  +      +  +          IE+ E   + S  +F RSHSTGHSIV      +
Sbjct: 245 VHEEHPSTTIGSLEHTD---------EIESYERRMKASNLRFWRSHSTGHSIVVKTENEQ 302

Query: 251 SRHKLILPEHVKIKI 257
              +    + +KI+I
Sbjct: 305 EEEEEEEKDEIKIRI 302

[Close]

BLAST of CmoCh02G016640.1 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 116.7 bits (291), Expect = 4.5e-25
Identity = 81/248 (32.66%), Postives = 119/248 (47.98%), Query Frame = 0


Query: 17  SPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRRSTSGNLLHPSNDSPAAPTG 76
           +P  T V  +++  F   G  S+Y   C       +R+   S++    + +ND  +   G
Sbjct: 43  TPSKTTVFAVLVTLFFLTGLLSVYIRHC-------ARSNPDSSTRYFRNRANDGSSRRGG 102

Query: 77  LDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRLLTVCYHVFHQECIDLW 136
           LD  ++ SFP F YS +KE +  +  LECAICL E  D   +RLL +C H+FH +CID W
Sbjct: 103 LDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTW 162

Query: 137 LESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDAISIDIDEDADADADSDADD 196
           L SH TCPVCR NL +      ++K  D        ++ D + +D               
Sbjct: 163 LYSHATCPVCRSNLTA-----KSNKPGDEDDGVPLAAMRDHVVVD--------------- 222

Query: 197 NEGSCSNKGKQRIETEEVEKEESRK-------KFSRSHSTGHSIVKAKREGESRHKLILP 256
                       IET EV K   R+       KF RS+STGHS+ +   +G  R  L LP
Sbjct: 223 ------------IETVEVAKSHHRRLSSEISGKFPRSNSTGHSMDRFS-DGTERFTLRLP 250

Query: 257 EHVKIKIL 258
           + VK++++
Sbjct: 283 DDVKMRLM 250

[Close]

BLAST of CmoCh02G016640.1 vs. ExPASy TrEMBL
Match: A0A6J1ESF8 (RING-H2 finger protein ATL29-like OS=Cucurbita moschata OX=3662 GN=LOC111437314 PE=4 SV=1)

HSP 1 Score: 602.4 bits (1552), Expect = 1.0e-168
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0


Query: 1   MSTDLTRIPFPSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRRSTS 60
           MSTDLTRIPFPSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRRSTS
Sbjct: 1   MSTDLTRIPFPSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRRSTS 60

Query: 61  GNLLHPSNDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRL 120
           GNLLHPSNDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRL
Sbjct: 61  GNLLHPSNDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRL 120

Query: 121 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDAISI 180
           LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDAISI
Sbjct: 121 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDAISI 180

Query: 181 DIDEDADADADSDADDNEGSCSNKGKQRIETEEVEKEESRKKFSRSHSTGHSIVKAKREG 240
           DIDEDADADADSDADDNEGSCSNKGKQRIETEEVEKEESRKKFSRSHSTGHSIVKAKREG
Sbjct: 181 DIDEDADADADSDADDNEGSCSNKGKQRIETEEVEKEESRKKFSRSHSTGHSIVKAKREG 240

Query: 241 ESRHKLILPEHVKIKILRGHNWTGSCVTFEELARNPSNGGGFSKLCERGDRNNLQKPACS 300
           ESRHKLILPEHVKIKILRGHNWTGSCVTFEELARNPSNGGGFSKLCERGDRNNLQKPACS
Sbjct: 241 ESRHKLILPEHVKIKILRGHNWTGSCVTFEELARNPSNGGGFSKLCERGDRNNLQKPACS 300

Query: 301 V 302
           V
Sbjct: 301 V 301

[Close]

BLAST of CmoCh02G016640.1 vs. ExPASy TrEMBL
Match: A0A6J1K7T3 (RING-H2 finger protein ATL29-like OS=Cucurbita maxima OX=3661 GN=LOC111491422 PE=4 SV=1)

HSP 1 Score: 566.6 bits (1459), Expect = 6.1e-158
Identity = 281/301 (93.36%), Postives = 291/301 (96.68%), Query Frame = 0


Query: 1   MSTDLTRIPFPSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRRSTS 60
           MSTDLTRIPFP+QDH SPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRN+RRSTS
Sbjct: 22  MSTDLTRIPFPAQDHGSPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNLRRSTS 81

Query: 61  GNLLHPSNDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRL 120
           GNLLHPS DSPAAPTGLDPLLINSFPTFPYSKIKEFRSDN+GLECAICL+EFNDESFLRL
Sbjct: 82  GNLLHPSTDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRL 141

Query: 121 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDAISI 180
           LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSD RRNSADKTSDPPRTS RESIEDAISI
Sbjct: 142 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISI 201

Query: 181 DIDEDADADADSDADDNEGSCSNKGKQRIETEEVEKEESRKKFSRSHSTGHSIVKAKREG 240
           DIDED DA+ADSDADD+EGSCSNKGKQRIETEE+EKEESRKKFSRSHSTG+SIVKAKREG
Sbjct: 202 DIDEDNDANADSDADDDEGSCSNKGKQRIETEEMEKEESRKKFSRSHSTGYSIVKAKREG 261

Query: 241 ESRHKLILPEHVKIKILRGHNWTGSCVTFEELARNPSNGGGFSKLCERGDRNNLQKPACS 300
           E RHKLILPEHVKIKILRGHNWTGSCVT EELARNP NGGG S+LCE GDRNNLQ+PACS
Sbjct: 262 EGRHKLILPEHVKIKILRGHNWTGSCVTLEELARNPGNGGGLSELCETGDRNNLQRPACS 321

Query: 301 V 302
           V
Sbjct: 322 V 322

[Close]

BLAST of CmoCh02G016640.1 vs. ExPASy TrEMBL
Match: A0A6J1HG37 (RING-H2 finger protein ATL29 OS=Cucurbita moschata OX=3662 GN=LOC111463956 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 9.0e-117
Identity = 219/305 (71.80%), Postives = 252/305 (82.62%), Query Frame = 0


Query: 1   MSTDLTRIPFPSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRRSTS 60
           MSTD +   F  ++H++PP+TI+LTLIL+AFL VGFFSIY CRC++DS LHSRN+RRS S
Sbjct: 41  MSTDFSHSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPS 100

Query: 61  GNLLHPSNDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRL 120
           GN+LHPS DSP  P GLDPLLIN+FPTFPYS IKEFRSD  GLECAICLLEF+D+SFLRL
Sbjct: 101 GNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRL 160

Query: 121 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSD-----PPRTSHRESIE 180
           LTVC HVFHQECIDLWLESHKTCPVCRRNLDSD  RNSADK  D     PPR++H ESIE
Sbjct: 161 LTVCCHVFHQECIDLWLESHKTCPVCRRNLDSDSARNSADKPPDSDHDNPPRSTHHESIE 220

Query: 181 DAISIDIDEDADADADSDADDNEG---SCSNKGKQRIETEEVEKEESRKKFSRSHSTGHS 240
           DAISIDID+D D D ++DADD+     S SN+GKQ I+TEE E ++  KKFSR HSTGHS
Sbjct: 221 DAISIDIDDDVDDDDNADADDDNDDRRSGSNRGKQSIKTEEAE-DDGAKKFSRCHSTGHS 280

Query: 241 IVKAKREGESRHKLILPEHVKIKILRGHNWTGSCVTFEELARNPSNGGGFSKLCERGDRN 298
           I+KA+RE + R+KL LPEHVKIKI+RGHNWTGSCVTF+E  RNP NGGGFS+L E  DR 
Sbjct: 281 ILKARREDDDRYKLRLPEHVKIKIIRGHNWTGSCVTFDEFLRNPGNGGGFSELSESDDRI 340

[Close]

BLAST of CmoCh02G016640.1 vs. ExPASy TrEMBL
Match: A0A6J1HV34 (LOW QUALITY PROTEIN: RING-H2 finger protein ATL29-like OS=Cucurbita maxima OX=3661 GN=LOC111467100 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.8e-115
Identity = 217/304 (71.38%), Postives = 249/304 (81.91%), Query Frame = 0


Query: 1   MSTDLTRIPFPSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRRSTS 60
           MSTD     F  ++H++PP+TI+LTLIL+AFL VGFFSIY CRC++DS LHSRN+RRS S
Sbjct: 31  MSTDFPHSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPS 90

Query: 61  GNLLHPSNDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRL 120
           GN+LHPS DSP  P GLDPLLIN+FPTFPYS IKEFRSD  GLECAICLLEF+D+SFLRL
Sbjct: 91  GNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRL 150

Query: 121 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSD-----PPRTSHRESIE 180
           LTVC HVFHQECIDLWLESHKTCPVCRRNLDSD  RNSADK  D     PPR++H ESIE
Sbjct: 151 LTVCCHVFHQECIDLWLESHKTCPVCRRNLDSDSTRNSADKPPDSDHDNPPRSTHHESIE 210

Query: 181 DAISIDIDEDADAD--ADSDADDNEGSCSNKGKQRIETEEVEKEESRKKFSRSHSTGHSI 240
           DAISIDID+D D D  AD+D DD+  S SN+GKQ I+ EE E ++  KKFSR HSTGHSI
Sbjct: 211 DAISIDIDDDVDDDDNADADDDDDRRSGSNRGKQSIKIEEAE-DDGIKKFSRCHSTGHSI 270

Query: 241 VKAKREGESRHKLILPEHVKIKILRGHNWTGSCVTFEELARNPSNGGGFSKLCERGDRNN 298
           +KA+RE + R+KL LPEHVKIK++RGHNWTGSCVTF+E  RNP N GGFS+L E  DR +
Sbjct: 271 LKARREDDDRYKLRLPEHVKIKMIRGHNWTGSCVTFDEFLRNPGNAGGFSELSESDDRID 330

[Close]

BLAST of CmoCh02G016640.1 vs. ExPASy TrEMBL
Match: A0A0A0LI09 (RING-H2 finger protein ATL29 OS=Cucumis sativus OX=3659 GN=Csa_3G901170 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.8e-115
Identity = 217/310 (70.00%), Postives = 250/310 (80.65%), Query Frame = 0


Query: 1   MSTDLTRIPFPSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRRSTS 60
           MSTD +R PFP+ DH+SPP+TI+LTLIL+AFL +GFFSIY CRC+++S LHSRN+RRS S
Sbjct: 27  MSTDFSRPPFPTNDHSSPPLTIILTLILLAFLLIGFFSIYFCRCIMESLLHSRNLRRSPS 86

Query: 61  GNLLHPSNDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRL 120
           GNLLHP++DSPA   GLDPLLINSFPTFPYS IKEFRSD +GLECAICLLEF+D+SFLRL
Sbjct: 87  GNLLHPTSDSPAPHPGLDPLLINSFPTFPYSGIKEFRSDKIGLECAICLLEFDDDSFLRL 146

Query: 121 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDLRRNSADK-------TSDPPRTSHRES 180
           LT C HVFHQECIDLWL+SHKTCPVCRR+LDS   R+S+DK       T +PPR SH ES
Sbjct: 147 LTNCCHVFHQECIDLWLDSHKTCPVCRRDLDSVSPRDSSDKPIDPDSNTDNPPRISHHES 206

Query: 181 IEDAISIDIDEDA-DADADSDADDNEGSCSNKGKQRIETEEVEKEESR-----KKFSRSH 240
           IEDAISIDID+D  D   D+D D     CS KGKQ I   E EKE+ +     K+FSRSH
Sbjct: 207 IEDAISIDIDDDIDDVIGDADEDHRPSVCSEKGKQGITKTEEEKEKEKELERFKRFSRSH 266

Query: 241 STGHSIVKAKREGESRHKLILPEHVKIKILRGHNWTGSCVTFEELARNPSNGGGFSKLCE 298
           STGHSIVK++REGE +HKLILPEH+KIKI+RGHNWTGSCVTF+E  RN  NGGGFS+L E
Sbjct: 267 STGHSIVKSRREGEDKHKLILPEHIKIKIIRGHNWTGSCVTFDEFLRNSGNGGGFSELSE 326

[Close]

BLAST of CmoCh02G016640.1 vs. TAIR 10
Match: AT4G17920.1 (RING/U-box superfamily protein )

HSP 1 Score: 231.5 bits (589), Expect = 9.0e-61
Identity = 126/269 (46.84%), Postives = 173/269 (64.31%), Query Frame = 0


Query: 11  PSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRR---STSGNLLHPS 70
           P Q + +PP+T++LT+IL+ F F+GFF++Y C+C +D+ + +  +     + S N L   
Sbjct: 14  PQQHYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHHGGDTVSDNPLQQP 73

Query: 71  NDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRLLTVCYHV 130
              P  P GL+  +INSFPTFPYS +K+ R +  GLECAICLLEF+ +  LRLLT CYHV
Sbjct: 74  EAPPVNP-GLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHV 133

Query: 131 FHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDAISIDIDEDAD 190
           FHQECIDLW ESH+TCPVCRR+LD             PP  + + ++++ I   I E +D
Sbjct: 134 FHQECIDLWFESHRTCPVCRRDLD-----------PPPPPENTKPTVDEMIIDVIQETSD 193

Query: 191 ADADSDADDNEGSCSNKGKQRIETEEVEKEES-RKKFSRSHSTGHSIVKAKREGESRHKL 250
            + D        +  +      +T  ++KE++  +KFSRSHSTGHSIV+ K E E ++ L
Sbjct: 194 DEEDDHHRQQTTTQIDTWPSSGQTSSIKKEQNLPEKFSRSHSTGHSIVRNKPEEEDKYTL 253

Query: 251 ILPEHVKIKILRGHNWTGSCVTFEELARN 276
            LPEHVKIK+ RGH+ T SCVTF EL RN
Sbjct: 254 RLPEHVKIKVTRGHSQTESCVTFAELIRN 270

[Close]

BLAST of CmoCh02G016640.1 vs. TAIR 10
Match: AT5G46650.1 (RING/U-box superfamily protein )

HSP 1 Score: 204.9 bits (520), Expect = 9.0e-53
Identity = 121/277 (43.68%), Postives = 163/277 (58.84%), Query Frame = 0


Query: 6   TRIPFPSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRN--VRRSTSGNL 65
           T +P+P Q ++ PP+ I+LT+IL+   F+GFF+IY C+C   +   + N         N 
Sbjct: 11  TTVPYPPQHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYHNGLPENQ 70

Query: 66  LHPSND--SPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDES-FLRL 125
           +    +   P    GL+P +I S+P FP+S +K+ R D  GLECAICLLEF +E   LRL
Sbjct: 71  IQAQQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRL 130

Query: 126 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDAISI 185
           LT CYHVFHQECID WLES+KTCPVCRRNLD +   N             +E I + I  
Sbjct: 131 LTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNAPENI------------KELIIEVIQE 190

Query: 186 DIDEDADADADSDADDNEGSCSNKGKQRIETEEVEKEESRKKFSRSHSTGHSIVKAKREG 245
           +  E+ D +  S +++   S  + G    + E +       KFSRS +TGHSIV+ K E 
Sbjct: 191 NAHENRDQEQTSTSNEVMLSRQSSGNNERKIETLP-----DKFSRSKTTGHSIVRNKPEE 250

Query: 246 ESRHKLILPEHVKIKILRGH--NWTGSCVTFEELARN 276
           E R+ L LP+HVKIK+ R H  N T SC++F EL RN
Sbjct: 251 EDRYTLRLPDHVKIKVTRRHNNNQTESCISFGELVRN 270

[Close]

BLAST of CmoCh02G016640.1 vs. TAIR 10
Match: AT2G35420.1 (RING/U-box superfamily protein )

HSP 1 Score: 153.3 bits (386), Expect = 3.1e-37
Identity = 111/299 (37.12%), Postives = 155/299 (51.84%), Query Frame = 0


Query: 2   STDLTRIP----FPSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRR 61
           +T +  IP    FPS    S PVT+VLT +L+  +F GFFS++  + +++    + N++R
Sbjct: 4   TTSIDSIPATAVFPS---VSMPVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQR 63

Query: 62  STSGNLLHPSNDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESF 121
           +  G+L+H +  +P   TGLDP +I SFP F YS   +    N G ECAICL EF+DE  
Sbjct: 64  TPYGDLIHVA--TPPENTGLDPFIIRSFPVFHYSSATK---KNHGTECAICLSEFSDEDT 123

Query: 122 LRLLTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDA 181
           +RL+TVC H FH  CIDLW E HKTCPVCR  LD  +             +   ES  + 
Sbjct: 124 VRLITVCRHPFHSNCIDLWFELHKTCPVCRCELDPGM-----------IGSGRLESFHNT 183

Query: 182 ISIDIDEDADADADSDADDNEGSCSNKGKQRIETEEVEKEESRKKFSRSHSTGHSIVKAK 241
           ++I I        D + D+     +   K+ IE        S  +FSRSHSTGH +VK  
Sbjct: 184 VTITIQ-------DINHDEENPPTAGSSKRLIEA-------SAWRFSRSHSTGHFMVKT- 243

Query: 242 REGESRHKLILPEHVKIKILRGHNWTGSCVTFEELARNPSNGGGFSKLCERGDRNNLQK 297
                           +K  R H  TGSCV+F+EL R    G G+  L   GD +++ +
Sbjct: 244 ------------TDANVKSKRRHYQTGSCVSFDELTR--YEGAGWQWL---GDSSHISR 251

[Close]

BLAST of CmoCh02G016640.1 vs. TAIR 10
Match: AT1G32361.1 (RING/U-box superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-30
Identity = 94/255 (36.86%), Postives = 132/255 (51.76%), Query Frame = 0


Query: 11  PSQDHASPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRRSTS--GNLLHPSN 70
           P     S PVTIVLT  L+  +F GFFS + C C+    +   N  R+ +   NL+ PSN
Sbjct: 65  PVHTLVSSPVTIVLTGSLLFIIFTGFFSFFFCGCLFRKLMRIWNNHRNRNRPSNLIQPSN 124

Query: 71  DSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRLLTVCYHVF 130
             P    GLD  +I SFP +PYS +K+  +D    +C+ICL EF D+  +RL++ C H F
Sbjct: 125 --PPENLGLDSKIIESFPEYPYS-VKDHGTD----QCSICLTEFMDDDTIRLISTCNHSF 184

Query: 131 HQECIDLWLESHKTCPVCRRNLDSDLRRNSADKTSDPPRTS------HRESI-EDAISID 190
           H  CIDLW E HKTCPVCRR LD +  R S +K  + P         H E +  D ++I 
Sbjct: 185 HTICIDLWFEGHKTCPVCRRELDVE-DRTSLEKPLEVPEIDLVRSEIHDEPLPRDTVTII 244

Query: 191 IDEDADADADSDADDNEGSCSNKGKQRIETEEVEKEESRKKFSRSHSTGHSIVKAKREGE 250
           + E+  +      +  +          IE+ E   + S  +F RSHSTGHSIV      +
Sbjct: 245 VHEEHPSTTIGSLEHTD---------EIESYERRMKASNLRFWRSHSTGHSIVVKTENEQ 302

Query: 251 SRHKLILPEHVKIKI 257
              +    + +KI+I
Sbjct: 305 EEEEEEEKDEIKIRI 302

[Close]

BLAST of CmoCh02G016640.1 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-26
Identity = 81/248 (32.66%), Postives = 119/248 (47.98%), Query Frame = 0


Query: 17  SPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNVRRSTSGNLLHPSNDSPAAPTG 76
           +P  T V  +++  F   G  S+Y   C       +R+   S++    + +ND  +   G
Sbjct: 43  TPSKTTVFAVLVTLFFLTGLLSVYIRHC-------ARSNPDSSTRYFRNRANDGSSRRGG 102

Query: 77  LDPLLINSFPTFPYSKIKEFRSDNVGLECAICLLEFNDESFLRLLTVCYHVFHQECIDLW 136
           LD  ++ SFP F YS +KE +  +  LECAICL E  D   +RLL +C H+FH +CID W
Sbjct: 103 LDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTW 162

Query: 137 LESHKTCPVCRRNLDSDLRRNSADKTSDPPRTSHRESIEDAISIDIDEDADADADSDADD 196
           L SH TCPVCR NL +      ++K  D        ++ D + +D               
Sbjct: 163 LYSHATCPVCRSNLTA-----KSNKPGDEDDGVPLAAMRDHVVVD--------------- 222

Query: 197 NEGSCSNKGKQRIETEEVEKEESRK-------KFSRSHSTGHSIVKAKREGESRHKLILP 256
                       IET EV K   R+       KF RS+STGHS+ +   +G  R  L LP
Sbjct: 223 ------------IETVEVAKSHHRRLSSEISGKFPRSNSTGHSMDRFS-DGTERFTLRLP 250

Query: 257 EHVKIKIL 258
           + VK++++
Sbjct: 283 DDVKMRLM 250

The following BLAST results are available for this feature:

BLAST of CmoCh02G016640.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49691	1.3e-59	46.84	RING-H2 finger protein ATL29 OS=Arabidopsis thaliana OX=3702 GN=ATL29 PE=3 SV=1	[more]
Q9FIR0	1.3e-51	43.68	RING-H2 finger protein ATL30 OS=Arabidopsis thaliana OX=3702 GN=ATL30 PE=2 SV=1	[more]
Q6NKR1	4.4e-36	37.12	RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1	[more]
Q9LQM2	3.0e-29	36.86	RING-H2 finger protein ATL81 OS=Arabidopsis thaliana OX=3702 GN=ATL81 PE=2 SV=1	[more]
Q8W571	4.5e-25	32.66	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]

BLAST of CmoCh02G016640.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESF8	1.0e-168	100.00	RING-H2 finger protein ATL29-like OS=Cucurbita moschata OX=3662 GN=LOC111437314 ...	[more]
A0A6J1K7T3	6.1e-158	93.36	RING-H2 finger protein ATL29-like OS=Cucurbita maxima OX=3661 GN=LOC111491422 PE...	[more]
A0A6J1HG37	9.0e-117	71.80	RING-H2 finger protein ATL29 OS=Cucurbita moschata OX=3662 GN=LOC111463956 PE=4 ...	[more]
A0A6J1HV34	3.8e-115	71.38	LOW QUALITY PROTEIN: RING-H2 finger protein ATL29-like OS=Cucurbita maxima OX=36...	[more]
A0A0A0LI09	3.8e-115	70.00	RING-H2 finger protein ATL29 OS=Cucumis sativus OX=3659 GN=Csa_3G901170 PE=4 SV=...	[more]

BLAST of CmoCh02G016640.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17920.1	9.0e-61	46.84	RING/U-box superfamily protein	[more]
AT5G46650.1	9.0e-53	43.68	RING/U-box superfamily protein	[more]
AT2G35420.1	3.1e-37	37.12	RING/U-box superfamily protein	[more]
AT1G32361.1	2.2e-30	36.86	RING/U-box superfamily protein	[more]
AT4G40070.1	3.2e-26	32.66	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 105..146 e-value: 2.6E-6 score: 37.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 104..147 e-value: 5.9E-13 score: 48.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 105..147 score: 12.607302
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 81..156 e-value: 9.9E-20 score: 71.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..196
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 5..273
None	No IPR available	PANTHER	PTHR14155:SF521	RING-H2 FINGER PROTEIN ATL29	coord: 5..273
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 104..147 e-value: 2.96655E-16 score: 69.2611
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 81..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G016640	CmoCh02G016640	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G016640.1:exon:9437	CmoCh02G016640.1:exon:9437	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G016640.1:cds	CmoCh02G016640.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G016640.1	CmoCh02G016640.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane