CmoCh02G003930.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G003930.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 2027396 .. 2031085 (+)
Sequence length795
RNA-Seq ExpressionCmoCh02G003930.1
SyntenyCmoCh02G003930.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGCCTCCACCATCTCCTGGAACTCCTCGTTGCTCATTCCATCTTCCGGATACGAGATTTGTTCTGTTCCTTCACTCAATCGGACGATTTTTTTGCTTTTTTCTGTTTCTGATCGGCTCAGTTTGCTGTGCGGATTCTCTCGCTGTACCACCGCTATTTTCTCCGACTGACTCCTACGATAATGTTTGATTTCTTCAGGATTACCGATTTTCTTTATCGCGATTGAGGCGTTGCCGCTTCCGCTATCGATCTGCTTGATTCGGTACTTGATGGAGGCGTCGCCATGGACGTTTCCGCTTCCGCTTCCGCTATCGATCTGCTTGATTCGATAATCGATGGAGGCGTCGCCTTGGACGTTGCCGCTGCCGCTATCGGTCTGCTTGATTCGGTACTTGATCTCGGCGCGACGAGTTCTTTGATTCTTCTCGCTGTTTTGGATGAACTCCTCGTAAAGATCGGCAACCGAATTCTTCTTGCTCAGATCCGTACCAGAGAACTGTCCCGATTTAGCGAACAGAGTGATGACTATCGCGTTTCCGATCAGAAACACGAAGCGAGGACTAATCAAAGTCATCGACAAGCACCGGAAGTACTCTCCAGAATTCTTGAAGGCGCTCGGCAGATGGATAGATAATTTCGAGATCACGACGAGAATCAAACACAACTCGATGAACCGAAACAGGTTAGCAATTTTCCTGAGCTGTCGATACTTAAGAATCGCGTTCATCTTCTCCGTTCTTATGTCGCAGAAACCGACAGACTCCATTTCCAGAAACAACAAAATCAATCCAGTGAAAACAACAACAACAACAACAACAGAATTTACAAAGACGATCAGGTAAAATCAAATCAATGTCACTGGTAAACAAATTCCTTCTCCGTCAAATTCATCGATCCAACCCCAACAATCATCTCCAGTGGAATCACTTCCAGGAAACTGGACGGTGCTGCAAAGAAATTTGGCGATTGGAAGCATGGAAACAGAGAGAAAATCAACAAGACAAAATTTGAGGAACAAAGAAAAACAGAGTAATCTCCACTTTTTTTTTTTTTTTTTGTTCTTCCTTCTTTTTCTCTTCAACTAGTTTTATTGTTCTTTTTTCTATAAACGCTTTAGTTTCAATGTGTTTTGATAGAAGTAGGATTGGTATTTATAGTCACATAAAATTAATTTTTCCTCTTTAATTAATATATATTCCAATTACTTTATTTTCTGTCTTTAAAAAATTATGCAATTTGAAGCCTTTTGTCTAGAACACCATTTTTAAATTATTTATTAAACATTATTAATGGAATAGAATAAATCCATGGCCATAAAAGGTAGACAGCCCAGTCCTTGGAGATTATATTTTAAAGAATAAATAAATGTTTGTTGATATTAGGATAATAATTTTTTCTTTACTTCTCTTTATTCCAAAAAAAAAATTGATTTCCAAGAATTATTAAAGTAAATTAGAATGTTATCCATTTTTTAATATTTGATTTTAATATTTCAACGTCAATTTTGTAAAAAAATATATATTTTTATTAACTTGGTTTTTTAAAATTTCTATTTAAGTTAAAAAAGAAGTGAAAAATTATTTTAAAATATTAATGGATTTTTAGATTTTTTTTTTTTTTTTTTGTATAATTGCTGACTAGGCAAACAGATATTAGTTGAAAAATGCCAAGTGGACAAAAGGTGAAACAGTTGGAAATATGGAATCCAAGTGGAGATGCCACATTCACTTTCTTACTCACTAAGAAAATGACACGTGGCGCGTTCTTATTCAACCAATGAGTCCTTTTGGGAATTTCTTTTTGCCCTTTATTAGCCTTTTAATTGCCATTCAATTTACACTTATGTCCCGTCCGTCAGTCCCATCTGACACACGGTGACAACTAGTCGCTATCGTTTGTGGATGCCACGTGCTACGTATTTCCACTCTATTGTTAAATTAAAGAATAAAATTAAAAAAAGAAAATATACGCTAAATTAACAAAAAAAAAATTAATTCTTATAAATAATTTTAAAAGTTTAAATAATTCTTTTAAATTTCTAAAAAAAAATAATTATTTTTATTTTTATTTTTATCCCTTTCAAAAATACTCTTTAATTTTCAAAATTATTTCAAATATACATTTAATACTCTTAAATTTTTTTTCAAATTTTTAAAAACACCTTTAAACTAACCAAAAAAACTCTACCTTAGTAATATTAAAAAATTCGAATTCATAGACAACTTTCATCCATGCTGGTAAAGATTTTTCTGAACCTTTTTTATAACCGTAAATGATTTTTTAAATATAGTACGACAAACATATTTTTTAAATTTTTAAAAAAGTTGAAGGGTATTAATAAAATTTTTAAAAGTTGAAACACTCTTAAAAATTCAAAAATATTTTGAAATAAAATACCAGTTCTATCTAAAGCTAACAGTAGGGTATTTTTTTAGACAAATATAAAAGTTAGTCATCCGACTCAAATTCAACGAGCAAACATATTAGTACTTGATCAATAAGTGAATAGGACGATCCAAAAAAAATCAACCAGTAAAAACCCAAAACTTATATACTCTAGAGATAATCTAAGAATAAATATTAAATAACGTGATCGATGAAACAATGATTAAAATCATTTAAAATTCTAAACATTAGAAAATAACAACACCCATATAAAATAAAATAAAATAAAAAAGTATTTGATAGATTTAATTTTTAAAAATTAAAAACTATGAAATAGAATTTAAATCTACCTTTAAATTATAATAAGATTTAAATAGTTGTTTTTTTTTTTATGGAGAGATTAAAAGGAAAAAGACAAATAAGGACAAATATAATAATGGTTAACATTATCCATTTCTTTATCCAATGAAGAATTTTAAAATAATTAAAAATAATAATAATTATAATAATAATAATTTGGGAGAAAAATCCAAATAGCAATAATTGAAGATATTGGAAGGATGATTTAGCATTTCTATATCATTTTCTTTTCTAATCATTTGGTTCCTTAAACAAATCTAACATTTCACCGCTCAAGCTTATCGCTACAAAATATTTTTCGTTTTAGTTCGTTACGTATCGTTTTCAACATCACGGTTTTAAAATATGTTTACTAAGGAGAGGTTTTTACACCTTTATAAGGAACGTTTCGTTCTCCTTTCCAATCAACATAGGATCTTATAATAAAACGGACAATATCTACTAGCGGTGAGTTTTACATGTATTAAACCTTGCACCAACAGATATCTACCAAATGATCATCAACCTTCGTAGGGTCTCTTCCCTCACCTCTTGACTGCTTCGATTTTGATTCGAATCATCCATCTATTTCTTTAAAAACACATTGCCGACAGTATTTCCTACCATCGTAGGAGACACACCGTCTACGTAGAATCAACAATTTTTTTTTGTGGGTTAGGTTGAGTCGAGTTGGATCTCTGTCACCAAACCGGCAAACCCATGTAGAAACGAGAAACCACATAAATCTAGCCCATCCTTGAAGCCAAGCCCATCAAATGCATGACCCAAGTTCGTGCTCGAGAGCCCAACAAGAGTAAGGTTCAATAGACGAATTCAAAAACGCCCCACGCAAAAACATAAAGTCGTGCTAAAAAAATAGGTCATTACATTTAATAAAAATATGTTTGGACTAAAAGTGTTTTTTTTTTTTTTTTCTTTTTGCATTTAAAGATATTAAGTAA

mRNA sequence

ATGAACGCCTCCACCATCTCCTGGAACTCCTCGTTGCTCATTCCATCTTCCGGATACGAGATTTGTTCTGTTCCTTCACTCAATCGGACGATTTTTTTGCTTTTTTCTGTTTCTGATCGGCTCAGTTTGCTGTGCGGATTCTCTCGCTGCGTTGCCGCTTCCGCTATCGATCTGCTTGATTCGGTACTTGATGGAGGCGTCGCCATGGACGTTTCCGCTTCCGCTTCCGCTATCGATCTGCTTGATTCGATAATCGATGGAGGCGTCGCCTTGGACGTTGCCGCTGCCGCTATCGGTCTGCTTGATTCGGTACTTGATCTCGGCGCGACGAGTTCTTTGATTCTTCTCGCTGTTTTGGATGAACTCCTCGTAAAGATCGGCAACCGAATTCTTCTTGCTCAGATCCGTACCAGAGAACTGTCCCGATTTAGCGAACAGAGTGATGACTATCGCGTTTCCGATCAGAAACACGAAGCGAGGACTAATCAAAGTCATCGACAAGCACCGGAAAAACCGACAGACTCCATTTCCAGAAACAACAAAATCAATCCAGTGAAAACAACAACAACAACAACAACAGAATTTACAAAGACGATCAGGAAACTGGACGGTGCTGCAAAGAAATTTGGCGATTGGAAGCATGGAAACAGAGAGAAAATCAACAAGACAAAATTTGAGGAACAAAGAAAAACAGAAAGTAGGATTGTATTTCCTACCATCCCCATCCTTGAAGCCAAGCCCATCAAATGCATGACCCAAGTTCGTGCTCGAGAGCCCAACAAGAATATTAAGTAA

Coding sequence (CDS)

ATGAACGCCTCCACCATCTCCTGGAACTCCTCGTTGCTCATTCCATCTTCCGGATACGAGATTTGTTCTGTTCCTTCACTCAATCGGACGATTTTTTTGCTTTTTTCTGTTTCTGATCGGCTCAGTTTGCTGTGCGGATTCTCTCGCTGCGTTGCCGCTTCCGCTATCGATCTGCTTGATTCGGTACTTGATGGAGGCGTCGCCATGGACGTTTCCGCTTCCGCTTCCGCTATCGATCTGCTTGATTCGATAATCGATGGAGGCGTCGCCTTGGACGTTGCCGCTGCCGCTATCGGTCTGCTTGATTCGGTACTTGATCTCGGCGCGACGAGTTCTTTGATTCTTCTCGCTGTTTTGGATGAACTCCTCGTAAAGATCGGCAACCGAATTCTTCTTGCTCAGATCCGTACCAGAGAACTGTCCCGATTTAGCGAACAGAGTGATGACTATCGCGTTTCCGATCAGAAACACGAAGCGAGGACTAATCAAAGTCATCGACAAGCACCGGAAAAACCGACAGACTCCATTTCCAGAAACAACAAAATCAATCCAGTGAAAACAACAACAACAACAACAACAGAATTTACAAAGACGATCAGGAAACTGGACGGTGCTGCAAAGAAATTTGGCGATTGGAAGCATGGAAACAGAGAGAAAATCAACAAGACAAAATTTGAGGAACAAAGAAAAACAGAAAGTAGGATTGTATTTCCTACCATCCCCATCCTTGAAGCCAAGCCCATCAAATGCATGACCCAAGTTCGTGCTCGAGAGCCCAACAAGAATATTAAGTAA

Protein sequence

MNASTISWNSSLLIPSSGYEICSVPSLNRTIFLLFSVSDRLSLLCGFSRCVAASAIDLLDSVLDGGVAMDVSASASAIDLLDSIIDGGVALDVAAAAIGLLDSVLDLGATSSLILLAVLDELLVKIGNRILLAQIRTRELSRFSEQSDDYRVSDQKHEARTNQSHRQAPEKPTDSISRNNKINPVKTTTTTTTEFTKTIRKLDGAAKKFGDWKHGNREKINKTKFEEQRKTESRIVFPTIPILEAKPIKCMTQVRAREPNKNIK
Homology
The following BLAST results are available for this feature:
BLAST of CmoCh02G003930.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003930.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003930.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003930.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..193
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..193

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh02G003930CmoCh02G003930gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G003930.1:exon:3055CmoCh02G003930.1:exon:3055exon
CmoCh02G003930.1:exon:3054CmoCh02G003930.1:exon:3054exon
CmoCh02G003930.1:exon:3053CmoCh02G003930.1:exon:3053exon
CmoCh02G003930.1:exon:3052CmoCh02G003930.1:exon:3052exon
CmoCh02G003930.1:exon:3051CmoCh02G003930.1:exon:3051exon
CmoCh02G003930.1:exon:3050CmoCh02G003930.1:exon:3050exon
CmoCh02G003930.1:exon:3049CmoCh02G003930.1:exon:3049exon
CmoCh02G003930.1:exon:3048CmoCh02G003930.1:exon:3048exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G003930.1:cdsCmoCh02G003930.1:cdsCDS
CmoCh02G003930.1:cdsCmoCh02G003930.1:cds_2CDS
CmoCh02G003930.1:cdsCmoCh02G003930.1:cds_3CDS
CmoCh02G003930.1:cdsCmoCh02G003930.1:cds_4CDS
CmoCh02G003930.1:cdsCmoCh02G003930.1:cds_5CDS
CmoCh02G003930.1:cdsCmoCh02G003930.1:cds_6CDS
CmoCh02G003930.1:cdsCmoCh02G003930.1:cds_7CDS
CmoCh02G003930.1:cdsCmoCh02G003930.1:cds_8CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh02G003930.1CmoCh02G003930.1-proteinpolypeptide