CmoCh01G015770.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G015770.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 12105460 .. 12108456 (+)
Sequence length210
RNA-Seq ExpressionCmoCh01G015770.1
SyntenyCmoCh01G015770.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAGAGTGAAGACGAACATTAAAAGTGATGGCAGAGTGAATAATGAGGAGCGCATCTCCGACCCAAAACCCGACCTCAACCTTGTCCCCGACCCCGACCCCGACACGCCTCATTACTTTGGCTCCCTTTTAAGTACGCAAGTCATCCTTGAAATCATTTATTTTGGTCCCATGGAAATTGATTTTGACAGAACAGATAATTTAATTCAATCACGAGGGGTATTGGACCTATTTTCCCCTTCCACTTTAACATTTATTATCACTGTAAATATTCATTTAATATTTATCCTCTTTCTTTCCTTCAAAAATTATTATATAAAGAATTTTTTATTTTGTTATTTACTGTCCCTTTAAATATCGTTTATAAATACATTCATGGTTGTGTCATAAAAATAAATAATCCAAAATTATTGTTAATTTATATATATATATATATTTCAAAATTTTTATTATTTATTCTAGTTAATTTTTTTATTTTATAAATTTTAATTAAATATTTGAAATTAAATCAATATATATTTTATAAACTAAAATTTTATTTTTATTTAAAAATCTAATAAATTATTCCAGCCATCCCATCTGGACTGAATAAGGTTAAATTTATTATTTAATAAGAGTTGTTCGAGTTGAAAAATTTATAACTGGAATAATTGATTTAGGTCTTAAAAAAATGTTCCAATATGACTGGACCCATGAACGCTCGGTAATTGAATACAAAAAATGAAACAACTTTACAAATATATATTTCAATTATGGTCGATGATTAAATAATAAGTTTGGAGGTATAATTCTATAAAATTTTAGTATATGTAGTTTTTTTTAAAAAACGTCATTTACTATTTTAAAAGTCGATAGTTTGACTTTTACATTACAATTGTTGAACTAAAAAAACCTCTATATTTTGACGATCATTGCGTTTTTTTTTCTAGTTGTACTAATAGATGATTTAGTTGAACACGTGTACGAGAGAAGGTAATTTATGAGAGGAGTCGAGTAGTGAAACTACTATTCAAATATGGATTTGTTTTTAGTAAACGATTAGAACCTTGGGCCCGACTACGAAACTCAATGAAACCCGAAGCCATACCTGGCACCCCACATGACCTTATATAGGTTTCGTTGTTTCACGAGATATTTTCTTACTATTTCAAACGACTATAATGAAAATCACGTGTCAATGGAAGGAAAGGAAGTTGTATGCTGCTTTCGTGTTCTTTTTAGGTTATCTTATAAAAATACATTTAAATTTCAACATTTGTTCGGAAAATACGTCTATGATTTTAAAAATGACCATATTACCCTTAACATTTCACACGTGCCCCAAAAAAAACTCAAACCCGAAGCCAGACCTCGCACCCCACACGACCTCGTATAGGTTTCGTTGTTTCACGAGATATTTTCTTACTATTTCAAACGACTATAATGAAAATCACGTGTAATGGGAGGAAAGGAAGTTGTAGGCGGCTTCCATGTTCTTTTTAGGTTATCTTATAAAAATACTTTTAAATTTCGTCATTTGTTCGGAAAATACGTCTATGATTCTAAAAATGACCATATTACCCTTAACATTTCACACGCGCCCTAAAAAAACTCAAACCCGAAGCCAGACCCTGCATCACACACGACCTCATATAGGTTTTGTTGTTTCACGAGATATTTTCTTACTATTTCAAACGACTATAATAAAAATCACATGTAAATGGAAGGAAAGGAAGTTGTATTTTAAATTTCGTCATTTGTTCGAAAAATACATCTATAATTTTAAAATGGCCATATTACCCTTTAACATTTCACATGCGCTTAAAAAATTATCCTATAAATATAAAAATATTAGAATATTAGATAAAAAGTGGTCTAAAAATAAAATTGCACGAGGATATATTTAAATAATATAAATTTATCGCATTTATTATTTTAAATGGAAGTTCAAACTGTACCCTTATCCCGCTCACGCTCCTTTGACGCTCTCTATTTCTCTGTCTCTGTCTTTCATTTTCTGACTCTCTGTCCAAAGTTCAATTTCTCCCGCTCTCTGTATTTCTGCTGAGAGCTCTCCAGATCGCCATGGAAGCGGTGGAGCTCTAGTTAGAGATGTAAGCCGAACCTTGGCAGTGTTATTTTTTGTTTTGATAATCGGTTCATCTAATCTCTCGTGCTCATTTACGAGTATTTATTTTATGCGTTTGAACGTTTGTTTGGTTGTTTTAGCGGTTTCGAATCTCGGACGGATAATGATTGTTGTGGACGTTTCGATTTATTTGTTTTGGTGCATGGCGTGGATCTTCAATGCCGATTTCTTTTGTATTTAAGTCTATTTGGAAATCTATATTGCGCTTGATGATTTGGCCTTCGTCTGGCAGTTCAAATCCGGCGGATTTTAGAGGCTACTGTATGATTCCTTGTTGTTGCTTCCATGTTACTCGTTTTGGAGGGAAATTTGATTTCTTAAGTTCTTGGAAGCGTGCGTGATTTCTCTTCCCTATTTGGCTGGCAGCGATATCGAGAGGTCTTGTATTGGTTGGGTGGATGGAAGGAGAGAAGAAATAGGGAGTTTCTTACGGTTACGATACGAAAATAAACGTATGCGGTTTGCATCAGGGGATTCTGTGTTGTCTATTGTTTACTGTTGCTGTAATCTAGGTCCGTAACTTTCTTTGAAACTGTTACATACCATTTTCGCTACTCTTCACTTCTATTGGAACACCTTTACCATTAAATTATTGGTCGAGTATTATCACAGTAGTTCTCCATGTTTATCAGATTTTTCTCGAAAATTTTTTAGAGGTGAAAAATGTTTTACGCTATAGCTTTTCCATGAAGTTTTCAATCAAGCGTTGCATGTTATTTCACTTTCTGTAGTAGCCGCATGGTTTTTTTTCTCAATTTTCCTCTGTACCTCCACGTTAAATTATTTTCAGTTTAGCGTCGGTTCTTACCCATTTATCTTATGTTGGTAATGCAGGTTCAATGAAATTGATTTTTGATCTACTGTAA

mRNA sequence

ATGAATAGAGTGAAGACGAACATTAAAAGTGATGGCAGAGTGAATAATGAGGAGCGCATCTCCGACCCAAAACCCGACCTCAACCTTGTCCCCGACCCCGACCCCGACACGCCTCATTACTTTGGCTCCCTTTTAAGGGATTCTGTGTTGTCTATTGTTTACTGTTGCTGTAATCTAGGTTCAATGAAATTGATTTTTGATCTACTGTAA

Coding sequence (CDS)

ATGAATAGAGTGAAGACGAACATTAAAAGTGATGGCAGAGTGAATAATGAGGAGCGCATCTCCGACCCAAAACCCGACCTCAACCTTGTCCCCGACCCCGACCCCGACACGCCTCATTACTTTGGCTCCCTTTTAAGGGATTCTGTGTTGTCTATTGTTTACTGTTGCTGTAATCTAGGTTCAATGAAATTGATTTTTGATCTACTGTAA

Protein sequence

MNRVKTNIKSDGRVNNEERISDPKPDLNLVPDPDPDTPHYFGSLLRDSVLSIVYCCCNLGSMKLIFDLL
Homology
[Close]
BLAST of CmoCh01G015770.1 vs. NCBI nr
Match: KAG6608176.1 (hypothetical protein SDJN03_01518, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.1 bits (362), Expect = 4.6e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MNRVKTNIKSDGRVNNEERISDPKPDLNLVPDPDPDTPHYFGSLLRDSVLSIVYCCCNLG 60
          MNRVKTNIKSDGRVNNEERISDPKPDLNLVPDPDPDTPHYFGSLLRDSVLSIVYCCCNLG
Sbjct: 1  MNRVKTNIKSDGRVNNEERISDPKPDLNLVPDPDPDTPHYFGSLLRDSVLSIVYCCCNLG 60

Query: 61 SMKLIFDLL 70
          SMKLIFDLL
Sbjct: 61 SMKLIFDLL 69

The following BLAST results are available for this feature:
BLAST of CmoCh01G015770.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G015770.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G015770.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608176.14.6e-31100.00hypothetical protein SDJN03_01518, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh01G015770.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh01G015770CmoCh01G015770gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh01G015770.1:exon:3251CmoCh01G015770.1:exon:3251exon
CmoCh01G015770.1:exon:3252CmoCh01G015770.1:exon:3252exon
CmoCh01G015770.1:exon:3253CmoCh01G015770.1:exon:3253exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh01G015770.1:cdsCmoCh01G015770.1:cdsCDS
CmoCh01G015770.1:cdsCmoCh01G015770.1:cds_2CDS
CmoCh01G015770.1:cdsCmoCh01G015770.1:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh01G015770.1CmoCh01G015770.1-proteinpolypeptide