CmoCh01G015770 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G015770
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 12105460 .. 12108456 (+)
RNA-Seq Expression	CmoCh01G015770
Synteny	CmoCh01G015770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGAGTGAAGACGAACATTAAAAGTGATGGCAGAGTGAATAATGAGGAGCGCATCTCCGACCCAAAACCCGACCTCAACCTTGTCCCCGACCCCGACCCCGACACGCCTCATTACTTTGGCTCCCTTTTAAGTACGCAAGTCATCCTTGAAATCATTTATTTTGGTCCCATGGAAATTGATTTTGACAGAACAGATAATTTAATTCAATCACGAGGGGTATTGGACCTATTTTCCCCTTCCACTTTAACATTTATTATCACTGTAAATATTCATTTAATATTTATCCTCTTTCTTTCCTTCAAAAATTATTATATAAAGAATTTTTTATTTTGTTATTTACTGTCCCTTTAAATATCGTTTATAAATACATTCATGGTTGTGTCATAAAAATAAATAATCCAAAATTATTGTTAATTTATATATATATATATATTTCAAAATTTTTATTATTTATTCTAGTTAATTTTTTTATTTTATAAATTTTAATTAAATATTTGAAATTAAATCAATATATATTTTATAAACTAAAATTTTATTTTTATTTAAAAATCTAATAAATTATTCCAGCCATCCCATCTGGACTGAATAAGGTTAAATTTATTATTTAATAAGAGTTGTTCGAGTTGAAAAATTTATAACTGGAATAATTGATTTAGGTCTTAAAAAAATGTTCCAATATGACTGGACCCATGAACGCTCGGTAATTGAATACAAAAAATGAAACAACTTTACAAATATATATTTCAATTATGGTCGATGATTAAATAATAAGTTTGGAGGTATAATTCTATAAAATTTTAGTATATGTAGTTTTTTTTAAAAAACGTCATTTACTATTTTAAAAGTCGATAGTTTGACTTTTACATTACAATTGTTGAACTAAAAAAACCTCTATATTTTGACGATCATTGCGTTTTTTTTTCTAGTTGTACTAATAGATGATTTAGTTGAACACGTGTACGAGAGAAGGTAATTTATGAGAGGAGTCGAGTAGTGAAACTACTATTCAAATATGGATTTGTTTTTAGTAAACGATTAGAACCTTGGGCCCGACTACGAAACTCAATGAAACCCGAAGCCATACCTGGCACCCCACATGACCTTATATAGGTTTCGTTGTTTCACGAGATATTTTCTTACTATTTCAAACGACTATAATGAAAATCACGTGTCAATGGAAGGAAAGGAAGTTGTATGCTGCTTTCGTGTTCTTTTTAGGTTATCTTATAAAAATACATTTAAATTTCAACATTTGTTCGGAAAATACGTCTATGATTTTAAAAATGACCATATTACCCTTAACATTTCACACGTGCCCCAAAAAAAACTCAAACCCGAAGCCAGACCTCGCACCCCACACGACCTCGTATAGGTTTCGTTGTTTCACGAGATATTTTCTTACTATTTCAAACGACTATAATGAAAATCACGTGTAATGGGAGGAAAGGAAGTTGTAGGCGGCTTCCATGTTCTTTTTAGGTTATCTTATAAAAATACTTTTAAATTTCGTCATTTGTTCGGAAAATACGTCTATGATTCTAAAAATGACCATATTACCCTTAACATTTCACACGCGCCCTAAAAAAACTCAAACCCGAAGCCAGACCCTGCATCACACACGACCTCATATAGGTTTTGTTGTTTCACGAGATATTTTCTTACTATTTCAAACGACTATAATAAAAATCACATGTAAATGGAAGGAAAGGAAGTTGTATTTTAAATTTCGTCATTTGTTCGAAAAATACATCTATAATTTTAAAATGGCCATATTACCCTTTAACATTTCACATGCGCTTAAAAAATTATCCTATAAATATAAAAATATTAGAATATTAGATAAAAAGTGGTCTAAAAATAAAATTGCACGAGGATATATTTAAATAATATAAATTTATCGCATTTATTATTTTAAATGGAAGTTCAAACTGTACCCTTATCCCGCTCACGCTCCTTTGACGCTCTCTATTTCTCTGTCTCTGTCTTTCATTTTCTGACTCTCTGTCCAAAGTTCAATTTCTCCCGCTCTCTGTATTTCTGCTGAGAGCTCTCCAGATCGCCATGGAAGCGGTGGAGCTCTAGTTAGAGATGTAAGCCGAACCTTGGCAGTGTTATTTTTTGTTTTGATAATCGGTTCATCTAATCTCTCGTGCTCATTTACGAGTATTTATTTTATGCGTTTGAACGTTTGTTTGGTTGTTTTAGCGGTTTCGAATCTCGGACGGATAATGATTGTTGTGGACGTTTCGATTTATTTGTTTTGGTGCATGGCGTGGATCTTCAATGCCGATTTCTTTTGTATTTAAGTCTATTTGGAAATCTATATTGCGCTTGATGATTTGGCCTTCGTCTGGCAGTTCAAATCCGGCGGATTTTAGAGGCTACTGTATGATTCCTTGTTGTTGCTTCCATGTTACTCGTTTTGGAGGGAAATTTGATTTCTTAAGTTCTTGGAAGCGTGCGTGATTTCTCTTCCCTATTTGGCTGGCAGCGATATCGAGAGGTCTTGTATTGGTTGGGTGGATGGAAGGAGAGAAGAAATAGGGAGTTTCTTACGGTTACGATACGAAAATAAACGTATGCGGTTTGCATCAGGGGATTCTGTGTTGTCTATTGTTTACTGTTGCTGTAATCTAGGTCCGTAACTTTCTTTGAAACTGTTACATACCATTTTCGCTACTCTTCACTTCTATTGGAACACCTTTACCATTAAATTATTGGTCGAGTATTATCACAGTAGTTCTCCATGTTTATCAGATTTTTCTCGAAAATTTTTTAGAGGTGAAAAATGTTTTACGCTATAGCTTTTCCATGAAGTTTTCAATCAAGCGTTGCATGTTATTTCACTTTCTGTAGTAGCCGCATGGTTTTTTTTCTCAATTTTCCTCTGTACCTCCACGTTAAATTATTTTCAGTTTAGCGTCGGTTCTTACCCATTTATCTTATGTTGGTAATGCAGGTTCAATGAAATTGATTTTTGATCTACTGTAA

mRNA sequence

ATGAATAGAGTGAAGACGAACATTAAAAGTGATGGCAGAGTGAATAATGAGGAGCGCATCTCCGACCCAAAACCCGACCTCAACCTTGTCCCCGACCCCGACCCCGACACGCCTCATTACTTTGGCTCCCTTTTAAGGGATTCTGTGTTGTCTATTGTTTACTGTTGCTGTAATCTAGGTTCAATGAAATTGATTTTTGATCTACTGTAA

Coding sequence (CDS)

ATGAATAGAGTGAAGACGAACATTAAAAGTGATGGCAGAGTGAATAATGAGGAGCGCATCTCCGACCCAAAACCCGACCTCAACCTTGTCCCCGACCCCGACCCCGACACGCCTCATTACTTTGGCTCCCTTTTAAGGGATTCTGTGTTGTCTATTGTTTACTGTTGCTGTAATCTAGGTTCAATGAAATTGATTTTTGATCTACTGTAA

Protein sequence

MNRVKTNIKSDGRVNNEERISDPKPDLNLVPDPDPDTPHYFGSLLRDSVLSIVYCCCNLGSMKLIFDLL

Homology

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BLAST of CmoCh01G015770 vs. NCBI nr
Match: KAG6608176.1 (hypothetical protein SDJN03_01518, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.1 bits (362), Expect = 4.6e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MNRVKTNIKSDGRVNNEERISDPKPDLNLVPDPDPDTPHYFGSLLRDSVLSIVYCCCNLG 60
          MNRVKTNIKSDGRVNNEERISDPKPDLNLVPDPDPDTPHYFGSLLRDSVLSIVYCCCNLG
Sbjct: 1  MNRVKTNIKSDGRVNNEERISDPKPDLNLVPDPDPDTPHYFGSLLRDSVLSIVYCCCNLG 60

Query: 61 SMKLIFDLL 70
          SMKLIFDLL
Sbjct: 61 SMKLIFDLL 69

The following BLAST results are available for this feature:

BLAST of CmoCh01G015770 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G015770 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G015770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608176.1	4.6e-31	100.00	hypothetical protein SDJN03_01518, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh01G015770 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G015770.1	CmoCh01G015770.1	mRNA