CmoCh01G003320.1 (mRNA) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGCTGGATGAAAGGTTGCGACGACTGGAGGGAAATGGGGGAAGAGCTGGATGATGAGCGGGAAATCCTGAAGCAAGTTTTTGGCGATTCTTCTGAAGATGAAGACTGTGAAGATCAAACTGTAATAGGAGATTCAGCATATGAAGGTGGCCACATTCGTAGATGGGAGCAAGCCAAGGAAATCAAAGGTTTATGGCTGTGCAGAAGCTTCCTCTCTCCCCAACAAGAATCATCGCTACTCTCTGCAATCCGAAACGGTTCGTTGTATCGAATCTATCTGTTACTTTCCTGCAATTTCTTATCTCAAGTTGCTTTGAAAGAGAATATCGAAGAAAATTGAATTTCTCTATGTTTTGATCATTCTTCTTCGTATATTGTTTCAAGAGGTTCTGTTTTCGAATTTGATCCCTGAACTTAAGATTCAACTGAAGGAACAATAGGATGGAGTTTTTTTTTTGTTTGTTTAATTTATAAATCTTTGAGAAGAGTTTTTTTTACCCTTCTTTTTGAGATTGTAGATATTTGAACAAGTTTGTGAATGTTTAAGAAACTATTTCTGTGGTAATCTCACATGATTAGAGACTATTTCTGTATTGTTGTTCTTTCAGAAGGGTGGTTCATGGAAGCCTCTCAAAATCAGGTAACTACAGTTTTAATCTTGATAATTTTATTGGTGATCTATTATATTGATTTTATTTCTAGAAATGAACTCTTCTTGGAGAACTTAATAATGCTGCGCTGTTGCTGGATTTTGTTCTTGAAATGTAGATTTAATAATATCCTTATCTACTGTTACATTATCTGTTCAGGCCATGAGGTTTGGAAACCTTCCAACATGGGCTGCTGAACTTTCAGATTCCATTCATGAGGCAGTGCTTTCAAGTAACCACATGACAGATCCTTTGATTGTAGACCGCCATAATGGAGTTAAGATTGATTGTCCTCTTCCTTCAGATATTTTGTGGAGAGAACCACTCTTTGATCAAATGATAGCTAACATGTATCAACCAGGTGAGGTGCGAAGATGCCCATTTCCATTCTATTGATTAGACATTTATTAACCACGATTGGTTGGCTTAGCAGTTCATAAGAGCCATGTTATAAAGAGTTCAGAAGGAATGAGTTCAAGCTAATGTAGTTATTGATTTAGGTTTTAATATTTTCCTGACAACCAAATGTAGTCAGGTGGTTGTTTCATGAAAATAGTCGAGGTACGTGCAAGCTGACTCAAATACTCACAAGTATCATAAAAGGAGAGAGAAAAGAAGATTAGACATCTGTTTGAAGTGAACCTGTAGGCCCATAGCTTTAAGGGCTTCAAGAGGCTGTTTGGATACCTTTTTTTTATGTAGAACCATATAACTTATTTGGTAGGATAATTTTTAAAACACCCCTTGTTTTAGTAGAATGCAATTTTTAGAGTCAGTTTGCAAAACAGTTTCTGCAAACAGAATTTAGAGAACAACGTTTTAGCCGCCTAGATTGTGATGTTCGGTCTGTCAAGATGACGGGTGTATTCTTAACAACTGAAAGAAACAGTTACTCGTATTAGTAATAGCGAGAGGAGAAGAGGAGAGGGAGAGGTCACCTTTTTTTTTTTTTTAATAGCAGTATTATGCCAAAAGTGTAGTATCTTGATTAAGTTATTTCATATCTCTTTTATGAATTCTGTTTTTACTAGTTCACTTATATGATTTGTCCAAATTCTGCACACTTCAACCTCTTTCATGATAGAGTAGATTTCCAAATGTTTTGTTAATCTGATGAAAATGGTTTGTGAATGGCATGGTTAAAACATCTTAGGGTATGATATTCAAGAAAAGTTATATCTGACATTGCTATCTTCATTCACTGTATTTATTTCATTCACTGACATTGTTACAACTTCATTCTAATATTTTTCATAAAGGGGATCTGTGCACATGTTGACCTCATGCGCTTTGAAGATGGAATTGCCATTGTCTCACTCGAGTCACCATGTGTGATGCATTTTACTCGAGTTGATGAAACTTCCCGTAATCCTACTAGCAAGGGAGAAGTCGATGTATCGATGTCAAAAGTGCCCATATACCTAAACCCAGGATCGGTTGTTTTATTGTGGGGTGAAGCTCGGTACCTCTGGAAGCATGAGATAAATCGTAAGCCAGGGTTTCAAATGTGGGAAGGCCAGGAACTCACTCAGGGGAGGCGAACTTCCATCACACTGAGAAAGCTCTGTCAAGTTGATTAA ATGTGCTGGATGAAAGGTTGCGACGACTGGAGGGAAATGGGGGAAGAGCTGGATGATGAGCGGGAAATCCTGAAGCAAGTTTTTGGCGATTCTTCTGAAGATGAAGACTGTGAAGATCAAACTGTAATAGGAGATTCAGCATATGAAGGTGGCCACATTCGTAGATGGGAGCAAGCCAAGGAAATCAAAGGTTTATGGCTGTGCAGAAGCTTCCTCTCTCCCCAACAAGAATCATCGCTACTCTCTGCAATCCGAAACGAAGGGTGGTTCATGGAAGCCTCTCAAAATCAGGCCATGAGGTTTGGAAACCTTCCAACATGGGCTGCTGAACTTTCAGATTCCATTCATGAGGCAGTGCTTTCAAGTAACCACATGACAGATCCTTTGATTGTAGACCGCCATAATGGAGTTAAGATTGATTGTCCTCTTCCTTCAGATATTTTGTGGAGAGAACCACTCTTTGATCAAATGATAGCTAACATGTATCAACCAGGTGAGAGTCAGTTTGCAAAACAGTTTCTGCAAACAGAATTTAGAGAACAACGTTTTAGCCGCCTAGATTGTGATGTTCGGTCTGTCAAGATGACGGGTTATTATGCCAAAAGTGTAGGGATCTGTGCACATGTTGACCTCATGCGCTTTGAAGATGGAATTGCCATTGTCTCACTCGAGTCACCATGTGTGATGCATTTTACTCGAGTTGATGAAACTTCCCGTAATCCTACTAGCAAGGGAGAAGTCGATGTATCGATGTCAAAAGTGCCCATATACCTAAACCCAGGATCGGTTGTTTTATTGTGGGGTGAAGCTCGGTACCTCTGGAAGCATGAGATAAATCGTAAGCCAGGGTTTCAAATGTGGGAAGGCCAGGAACTCACTCAGGGGAGGCGAACTTCCATCACACTGAGAAAGCTCTGTCAAGTTGATTAA ATGTGCTGGATGAAAGGTTGCGACGACTGGAGGGAAATGGGGGAAGAGCTGGATGATGAGCGGGAAATCCTGAAGCAAGTTTTTGGCGATTCTTCTGAAGATGAAGACTGTGAAGATCAAACTGTAATAGGAGATTCAGCATATGAAGGTGGCCACATTCGTAGATGGGAGCAAGCCAAGGAAATCAAAGGTTTATGGCTGTGCAGAAGCTTCCTCTCTCCCCAACAAGAATCATCGCTACTCTCTGCAATCCGAAACGAAGGGTGGTTCATGGAAGCCTCTCAAAATCAGGCCATGAGGTTTGGAAACCTTCCAACATGGGCTGCTGAACTTTCAGATTCCATTCATGAGGCAGTGCTTTCAAGTAACCACATGACAGATCCTTTGATTGTAGACCGCCATAATGGAGTTAAGATTGATTGTCCTCTTCCTTCAGATATTTTGTGGAGAGAACCACTCTTTGATCAAATGATAGCTAACATGTATCAACCAGGTGAGAGTCAGTTTGCAAAACAGTTTCTGCAAACAGAATTTAGAGAACAACGTTTTAGCCGCCTAGATTGTGATGTTCGGTCTGTCAAGATGACGGGTTATTATGCCAAAAGTGTAGGGATCTGTGCACATGTTGACCTCATGCGCTTTGAAGATGGAATTGCCATTGTCTCACTCGAGTCACCATGTGTGATGCATTTTACTCGAGTTGATGAAACTTCCCGTAATCCTACTAGCAAGGGAGAAGTCGATGTATCGATGTCAAAAGTGCCCATATACCTAAACCCAGGATCGGTTGTTTTATTGTGGGGTGAAGCTCGGTACCTCTGGAAGCATGAGATAAATCGTAAGCCAGGGTTTCAAATGTGGGAAGGCCAGGAACTCACTCAGGGGAGGCGAACTTCCATCACACTGAGAAAGCTCTGTCAAGTTGATTAA MCWMKGCDDWREMGEELDDEREILKQVFGDSSEDEDCEDQTVIGDSAYEGGHIRRWEQAKEIKGLWLCRSFLSPQQESSLLSAIRNEGWFMEASQNQAMRFGNLPTWAAELSDSIHEAVLSSNHMTDPLIVDRHNGVKIDCPLPSDILWREPLFDQMIANMYQPGESQFAKQFLQTEFREQRFSRLDCDVRSVKMTGYYAKSVGICAHVDLMRFEDGIAIVSLESPCVMHFTRVDETSRNPTSKGEVDVSMSKVPIYLNPGSVVLLWGEARYLWKHEINRKPGFQMWEGQELTQGRRTSITLRKLCQVD Homology
BLAST of CmoCh01G003320.1 vs. ExPASy Swiss-Prot
Match: Q8RWY1 (Alkylated DNA repair protein ALKBH8 homolog OS=Arabidopsis thaliana OX=3702 GN=ALKBH8 PE=2 SV=2) HSP 1 Score: 65.5 bits (158), Expect = 1.2e-09 Identity = 43/111 (38.74%), Postives = 56/111 (50.45%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. ExPASy Swiss-Prot
Match: Q9UT12 (Uncharacterized protein P8A3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP8A3.02c PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 7.5e-07 Identity = 43/147 (29.25%), Postives = 73/147 (49.66%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. ExPASy TrEMBL
Match: A0A6J1GAA7 (uncharacterized protein LOC111452220 OS=Cucurbita moschata OX=3662 GN=LOC111452220 PE=4 SV=1) HSP 1 Score: 553.9 bits (1426), Expect = 4.2e-154 Identity = 272/309 (88.03%), Postives = 272/309 (88.03%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. ExPASy TrEMBL
Match: A0A6J1KDK2 (uncharacterized protein LOC111492881 OS=Cucurbita maxima OX=3661 GN=LOC111492881 PE=4 SV=1) HSP 1 Score: 516.5 bits (1329), Expect = 7.5e-143 Identity = 258/297 (86.87%), Postives = 259/297 (87.21%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. ExPASy TrEMBL
Match: A0A0A0KV56 (Fe2OG dioxygenase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G001660 PE=4 SV=1) HSP 1 Score: 446.8 bits (1148), Expect = 7.3e-122 Identity = 220/297 (74.07%), Postives = 242/297 (81.48%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. ExPASy TrEMBL
Match: A0A5A7TNC5 (Alkylated DNA repair protein alkB-like protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00950 PE=4 SV=1) HSP 1 Score: 430.3 bits (1105), Expect = 7.0e-117 Identity = 214/297 (72.05%), Postives = 236/297 (79.46%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. ExPASy TrEMBL
Match: A0A1S3BYI6 (uncharacterized protein LOC103494783 OS=Cucumis melo OX=3656 GN=LOC103494783 PE=4 SV=1) HSP 1 Score: 430.3 bits (1105), Expect = 7.0e-117 Identity = 214/297 (72.05%), Postives = 236/297 (79.46%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. NCBI nr
Match: XP_022948590.1 (uncharacterized protein LOC111452220 [Cucurbita moschata]) HSP 1 Score: 553.9 bits (1426), Expect = 8.7e-154 Identity = 272/309 (88.03%), Postives = 272/309 (88.03%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. NCBI nr
Match: XP_023524850.1 (uncharacterized protein LOC111788655 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 541.2 bits (1393), Expect = 5.8e-150 Identity = 267/309 (86.41%), Postives = 270/309 (87.38%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. NCBI nr
Match: KAG6606968.1 (Alkylated DNA repair protein ALKBH8-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 528.9 bits (1361), Expect = 3.0e-146 Identity = 264/306 (86.27%), Postives = 266/306 (86.93%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. NCBI nr
Match: XP_022998149.1 (uncharacterized protein LOC111492881 [Cucurbita maxima]) HSP 1 Score: 516.5 bits (1329), Expect = 1.5e-142 Identity = 258/297 (86.87%), Postives = 259/297 (87.21%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. NCBI nr
Match: XP_023524598.1 (uncharacterized protein LOC111788493 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 483.8 bits (1244), Expect = 1.1e-132 Identity = 246/297 (82.83%), Postives = 249/297 (83.84%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. TAIR 10
Match: AT4G02485.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ) HSP 1 Score: 253.4 bits (646), Expect = 2.3e-67 Identity = 150/298 (50.34%), Postives = 179/298 (60.07%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. TAIR 10
Match: AT1G31600.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 65.5 bits (158), Expect = 8.8e-11 Identity = 43/111 (38.74%), Postives = 56/111 (50.45%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. TAIR 10
Match: AT1G31600.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 65.5 bits (158), Expect = 8.8e-11 Identity = 43/111 (38.74%), Postives = 56/111 (50.45%), Query Frame = 0
BLAST of CmoCh01G003320.1 vs. TAIR 10
Match: AT1G31600.3 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 65.5 bits (158), Expect = 8.8e-11 Identity = 43/111 (38.74%), Postives = 56/111 (50.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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