Cmc11g0312511.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0312511.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	LITAF domain-containing protein
Location	CMiso1.1chr11: 32172956 .. 32175065 (-)
Sequence length	944
RNA-Seq Expression	Cmc11g0312511.1
Synteny	Cmc11g0312511.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATATATATACAAAAGGGTGTATTTGGGTGTGGGGCCAGTGTTAACCAATGGGAACTAAGAATATGTTTTTCTTTGTAAATAATATATGGGCGAAAGATATGGCGTTTTGACTTCGTAATTATCATTGGAATTCCGTTTTCTATCAATTCCTTCAACACAGAGAAAAGAGAGCGAGATACGAAGCTTACCCGAGCGAAAATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAACCCCTATCAGGCCGGCCAGATCCCTCCCAACGCCATTTTTGGCGATCCCCAGGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACCACCATCAGGTACCTCTTCTGCCCTTCTCTCTTCCCCTATGTATATATCTTCCTTCTTTTGATCTGATTTTCAAATTCTCTGTCTGATTATTCTCTTTATTGTCTTTTCCTATTTTTGTCCGATGCCTCCGTATCCCTTTGTTTAATTTGTTGTTAATTGATTTGTGAAATTCAGGTACAGTCTTTGGCTATTAATATATTTTGGATTTCGTTTGTTAAAACATGTATTTGATTGATCAATCATCAATGGGCCTTCCCCCCCTTTTTTGTGTCTTTGACCTAATTTTCTTCTTTAGGATTAGAATCACTTGTACGCGATAAAATTTCTTGGGCAATGGAACCATGCTTACAAGATAAGGCAGGAATTTTCTTTGCTCTAACAATGGATTGAAATGAAATGATCTGGAGTGACGTTTACACAATTTACTTGAAATGTCTTTTATATTGGATTCGAAATCGTCTGCATTCAAACTTTAATGTTGTCCAATAACGTTTACTTTGCTGCTTGTGTTTGGTATCTTGCATAAAACTTAATGTATCCACGGCTGTTACTTTGTTTTGGAATTTTTTTAAACACTAAGTCAGGATACATGTGGAAGGTAGATAAAATTCAAGGACTCCCAAATGGTGTATACCATACAAACTTCTGTTTGGATGTTAAACATTCAAATTGTTTACTTTTACATAAGATGTTCTCCCTTCTTTACAAATATAATTTATGAGAAATTTGAAACTTTATCATGTTGGGCTTCTCAATTAAATCTAATCTGTTGGTATTGCATCGAAATTTATTTTCTGTTCATCAACAAAAACTAAGAAAATTACAAAAGTAGCATAAATAATAGATTATGATGTTACAATGTTAGTTTGTATACACTCAGACAAGAATGTCTTGCTTATAAGCTCAAGACTTGTTGTAGCAGGGTATCAGTATGATTTATCATGGTTAGGCAGCAGAAGTTTTTATATAATTGTTAGTTTAAACAGTTGAATAATTGTGCATCCTCTTCATCTGGTTTTGATGCTTTTGTGATCTCCCAGGTCAAAGATAAGTTTAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTATAACTATTTCCGATCCTTGTTCATTCTTTCAGTTGCTTCTTGTAATCAACATTTTGTTTATTTGAAACTTTGCTCTATTATAGATAGTTGGAGTAATTGACTGTACGATCCATTATCCATCTTTTGTTTAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGATTTTGAGGAGCTGCTATTTTCCCATGTGGTTATTTAGCATCATCTGCATTCAGTACTTGCGATACTCTTGTGCTGTTTTTGTGATGTTCTTGTTACACTTAGGGATAGACACAGTTTGGATATCTTTCCATTTATACAATTGTAATAGAACCAAGTACATGTTTTGTTTTTTATATCTTACCGCTTGTAAATACCTTGTTTTTACATTGGCCTTGCTGTTTATAGACAATTCTGCTAGCCTAATTTGGATCAATCTTTCCATAGACCTCTTGATCTTGATCATTCATCCCACTACTGGAAATGGTATGCATTTATCCAATTCATTACCTTGAATCATCC

mRNA sequence

AAATATATATACAAAAGGGTGTATTTGGGTGTGGGGCCAGTGTTAACCAATGGGAACTAAGAATATGTTTTTCTTTGTAAATAATATATGGGCGAAAGATATGGCGTTTTGACTTCGTAATTATCATTGGAATTCCGTTTTCTATCAATTCCTTCAACACAGAGAAAAGAGAGCGAGATACGAAGCTTACCCGAGCGAAAATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAACCCCTATCAGGCCGGCCAGATCCCTCCCAACGCCATTTTTGGCGATCCCCAGGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACCACCATCAGGTCAAAGATAAGTTTAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGATTTTGAGGAGCTGCTATTTTCCCATGTGGTTATTTAGCATCATCTGCATTCAGTACTTGCGATACTCTTGTGCTGTTTTTGTGATGTTCTTGTTACACTTAGGGATAGACACAGTTTGGATATCTTTCCATTTATACAATTGTAATAGAACCAAGTACATGTTTTGTTTTTTATATCTTACCGCTTGTAAATACCTTGTTTTTACATTGGCCTTGCTGTTTATAGACAATTCTGCTAGCCTAATTTGGATCAATCTTTCCATAGACCTCTTGATCTTGATCATTCATCCCACTACTGGAAATGGTATGCATTTATCCAATTCATTACCTTGAATCATCC

Coding sequence (CDS)

ATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAACCCCTATCAGGCCGGCCAGATCCCTCCCAACGCCATTTTTGGCGATCCCCAGGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACCACCATCAGGTCAAAGATAAGTTTAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGA

Protein sequence

MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

Homology

[Close]

BLAST of Cmc11g0312511.1 vs. NCBI nr
Match: KAA0039847.1 (zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa] >TYK24652.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.1 bits (767), Expect = 9.8e-78
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of Cmc11g0312511.1 vs. NCBI nr
Match: XP_008459901.1 (PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 3.7e-77
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPN IFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of Cmc11g0312511.1 vs. NCBI nr
Match: XP_004140553.1 (GSH-induced LITAF domain protein [Cucumis sativus] >KGN46422.1 hypothetical protein Csa_005550 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 1.9e-76
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDP GVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of Cmc11g0312511.1 vs. NCBI nr
Match: XP_022991744.1 (GSH-induced LITAF domain protein [Cucurbita maxima])

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-69
Identity = 121/133 (90.98%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKN EPVVG+P YVGNN YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNSYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT+IRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDACAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSFALP 133

[Close]

BLAST of Cmc11g0312511.1 vs. NCBI nr
Match: XP_022954275.1 (GSH-induced LITAF domain protein [Cucurbita moschata] >XP_023547364.1 GSH-induced LITAF domain protein [Cucurbita pepo subsp. pepo] >KAG6576107.1 GSH-induced LITAF domain protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014627.1 GSH-induced LITAF domain protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.2 bits (692), Expect = 4.9e-69
Identity = 121/133 (90.98%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKN EPVVG+P YVGNN YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT+IRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSFALP 133

[Close]

BLAST of Cmc11g0312511.1 vs. ExPASy Swiss-Prot
Match: Q94CD4 (GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.5e-57
Identity = 96/133 (72.18%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M+K    V+GVP Y G NPYQAG +PPNAI+GDP G PIQQT+YRDTPAPFNC+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT +RSK  +AAVV CMMPFMLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWTQPSYALP 134
           DPP W QPS+ALP
Sbjct: 121 DPPQWKQPSFALP 133

[Close]

BLAST of Cmc11g0312511.1 vs. ExPASy TrEMBL
Match: A0A5D3DMB0 (Zf-LITAF-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002020 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 4.8e-78
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of Cmc11g0312511.1 vs. ExPASy TrEMBL
Match: A0A1S3CCH3 (uncharacterized protein LOC103498881 OS=Cucumis melo OX=3656 GN=LOC103498881 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 1.8e-77
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPN IFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of Cmc11g0312511.1 vs. ExPASy TrEMBL
Match: A0A0A0KDG7 (LITAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 9.0e-77
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDP GVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of Cmc11g0312511.1 vs. ExPASy TrEMBL
Match: A0A6J1JVN9 (GSH-induced LITAF domain protein OS=Cucurbita maxima OX=3661 GN=LOC111488277 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.4e-69
Identity = 121/133 (90.98%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKN EPVVG+P YVGNN YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNSYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT+IRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDACAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSFALP 133

[Close]

BLAST of Cmc11g0312511.1 vs. ExPASy TrEMBL
Match: A0A6J1GS01 (GSH-induced LITAF domain protein OS=Cucurbita moschata OX=3662 GN=LOC111456579 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.4e-69
Identity = 121/133 (90.98%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKN EPVVG+P YVGNN YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT+IRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSFALP 133

[Close]

BLAST of Cmc11g0312511.1 vs. TAIR 10
Match: AT5G13190.1 (CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-58
Identity = 96/133 (72.18%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M+K    V+GVP Y G NPYQAG +PPNAI+GDP G PIQQT+YRDTPAPFNC+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT +RSK  +AAVV CMMPFMLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWTQPSYALP 134
           DPP W QPS+ALP
Sbjct: 121 DPPQWKQPSFALP 133

The following BLAST results are available for this feature:

BLAST of Cmc11g0312511.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039847.1	9.8e-78	100.00	zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa] >TYK24652.1 z...	[more]
XP_008459901.1	3.7e-77	99.25	PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]	[more]
XP_004140553.1	1.9e-76	98.51	GSH-induced LITAF domain protein [Cucumis sativus] >KGN46422.1 hypothetical prot...	[more]
XP_022991744.1	2.9e-69	90.98	GSH-induced LITAF domain protein [Cucurbita maxima]	[more]
XP_022954275.1	4.9e-69	90.98	GSH-induced LITAF domain protein [Cucurbita moschata] >XP_023547364.1 GSH-induce...	[more]

BLAST of Cmc11g0312511.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CD4	1.5e-57	72.18	GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV...	[more]

BLAST of Cmc11g0312511.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DMB0	4.8e-78	100.00	Zf-LITAF-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CCH3	1.8e-77	99.25	uncharacterized protein LOC103498881 OS=Cucumis melo OX=3656 GN=LOC103498881 PE=...	[more]
A0A0A0KDG7	9.0e-77	98.51	LITAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=3 ...	[more]
A0A6J1JVN9	1.4e-69	90.98	GSH-induced LITAF domain protein OS=Cucurbita maxima OX=3661 GN=LOC111488277 PE=...	[more]
A0A6J1GS01	2.4e-69	90.98	GSH-induced LITAF domain protein OS=Cucurbita moschata OX=3662 GN=LOC111456579 P...	[more]

BLAST of Cmc11g0312511.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13190.1	1.1e-58	72.18	CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (Inte...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 48..113 e-value: 2.0E-13 score: 60.6
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 46..110 e-value: 2.7E-12 score: 46.8
IPR006629	LPS-induced tumour necrosis factor alpha factor	PROSITE	PS51837	LITAF	coord: 33..113 score: 11.160626
None	No IPR available	PANTHER	PTHR23292:SF37	BNAC09G43880D PROTEIN	coord: 3..126
IPR037519	LITAF domain containing protein	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	coord: 3..126

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0312511	Cmc11g0312511	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312511.1-exon	Cmc11g0312511.1-exon-CMiso1.1chr11:32172956..32173378	exon
Cmc11g0312511.1-exon	Cmc11g0312511.1-exon-CMiso1.1chr11:32173513..32173639	exon
Cmc11g0312511.1-exon	Cmc11g0312511.1-exon-CMiso1.1chr11:32174672..32175065	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312511.1-three_prime_utr	Cmc11g0312511.1-three_prime_utr-CMiso1.1chr11:32172956..32173294	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312511.1-cds	Cmc11g0312511.1-cds-CMiso1.1chr11:32173295..32173378	CDS
Cmc11g0312511.1-cds	Cmc11g0312511.1-cds-CMiso1.1chr11:32173513..32173639	CDS
Cmc11g0312511.1-cds	Cmc11g0312511.1-cds-CMiso1.1chr11:32174672..32174865	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312511.1-five_prime_utr	Cmc11g0312511.1-five_prime_utr-CMiso1.1chr11:32174866..32175065	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312511.1	Cmc11g0312511.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0008270	zinc ion binding