Cmc08g0236391.1 (mRNA) Melon (Charmono) v1.1

Overview
NameCmc08g0236391.1
TypemRNA
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionBeta-galactosidase
LocationCMiso1.1chr08: 32744555 .. 32745388 (+)
Sequence length834
RNA-Seq ExpressionCmc08g0236391.1
SyntenyCmc08g0236391.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAGTCCTTTGGCCTTATTAGTGTTGATGGGACGAATCCCTGGATTTTGGACTCGGGGGCCACAGATCACTTGACAGGTTTCTCGGAGCATTTTGTCACTTATACACCCTCTGCCAGTAATGAGAAAATCCGGATAGCCAATGGCTCTTTAGCTTCGGTTGCTGGAAAAGGACAAATAGTCCTCTTTGACGGTTTCTCCCTCCAGAAGGTTTTGCATGTGCCTAAGCTTTCTTACAATCTGTTATCTATCAGTAAGATCACCCGTGAGCTACACTGTAAAGCTACTTTCTTACCTGAGTCTGTTTGCTTTCAGGACTTGAATTCAGGAAGGACGATTGGCACTGCCCGGCATAGTAGGGGACTTTACATCCTTAATGATGATACCTCCGGTAGTAGTATCTTTACGACTAGTTTACTGTCTTCCTATTTTAGCACCTCTGAACATGACTTTATGTTGTGGCATTTTCGGTTAGGTCACCCGAACTTTACGTATATGAAATATTTGTTTCCCTATCTCTTTCTTAAAATAGATGTCTCCTTGTTATCTTGTGATGTGTGCATTCAGGCAAAACAATATCGTGTTTCTTTTCCCTCACAACCATATAAACCCACACAATCGTTTACCCTTATCCATAATGACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGGGAAAAGGTGGTTTGTAACCTTCATTGATGATCATACCCGTCTTACCTGGGTCTACCTTATCACCAATAAATTTGAGGTTTCTTCTATTTTTCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAAAATTGCTATTCTTCGGAGTGA

mRNA sequence

ATGTCTCAGTCCTTTGGCCTTATTAGTGTTGATGGGACGAATCCCTGGATTTTGGACTCGGGGGCCACAGATCACTTGACAGGTTTCTCGGAGCATTTTGTCACTTATACACCCTCTGCCAGTAATGAGAAAATCCGGATAGCCAATGGCTCTTTAGCTTCGGTTGCTGGAAAAGGACAAATAGTCCTCTTTGACGGTTTCTCCCTCCAGAAGGTTTTGCATGTGCCTAAGCTTTCTTACAATCTGTTATCTATCAGTAAGATCACCCGTGAGCTACACTGTAAAGCTACTTTCTTACCTGAGTCTGTTTGCTTTCAGGACTTGAATTCAGGAAGGACGATTGGCACTGCCCGGCATAGTAGGGGACTTTACATCCTTAATGATGATACCTCCGGTAGTAGTATCTTTACGACTAGTTTACTGTCTTCCTATTTTAGCACCTCTGAACATGACTTTATGTTGTGGCATTTTCGGTTAGGTCACCCGAACTTTACGTATATGAAATATTTGTTTCCCTATCTCTTTCTTAAAATAGATGTCTCCTTGTTATCTTGTGATGTGTGCATTCAGGCAAAACAATATCGTGTTTCTTTTCCCTCACAACCATATAAACCCACACAATCGTTTACCCTTATCCATAATGACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGGGAAAAGGTGGTTTGTAACCTTCATTGATGATCATACCCGTCTTACCTGGGTCTACCTTATCACCAATAAATTTGAGGTTTCTTCTATTTTTCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAAAATTGCTATTCTTCGGAGTGA

Coding sequence (CDS)

ATGTCTCAGTCCTTTGGCCTTATTAGTGTTGATGGGACGAATCCCTGGATTTTGGACTCGGGGGCCACAGATCACTTGACAGGTTTCTCGGAGCATTTTGTCACTTATACACCCTCTGCCAGTAATGAGAAAATCCGGATAGCCAATGGCTCTTTAGCTTCGGTTGCTGGAAAAGGACAAATAGTCCTCTTTGACGGTTTCTCCCTCCAGAAGGTTTTGCATGTGCCTAAGCTTTCTTACAATCTGTTATCTATCAGTAAGATCACCCGTGAGCTACACTGTAAAGCTACTTTCTTACCTGAGTCTGTTTGCTTTCAGGACTTGAATTCAGGAAGGACGATTGGCACTGCCCGGCATAGTAGGGGACTTTACATCCTTAATGATGATACCTCCGGTAGTAGTATCTTTACGACTAGTTTACTGTCTTCCTATTTTAGCACCTCTGAACATGACTTTATGTTGTGGCATTTTCGGTTAGGTCACCCGAACTTTACGTATATGAAATATTTGTTTCCCTATCTCTTTCTTAAAATAGATGTCTCCTTGTTATCTTGTGATGTGTGCATTCAGGCAAAACAATATCGTGTTTCTTTTCCCTCACAACCATATAAACCCACACAATCGTTTACCCTTATCCATAATGACGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGGGAAAAGGTGGTTTGTAACCTTCATTGATGATCATACCCGTCTTACCTGGGTCTACCTTATCACCAATAAATTTGAGGTTTCTTCTATTTTTCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAAAATTGCTATTCTTCGGAGTGA

Protein sequence

MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHSRGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDVSLLSCDVCIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLITNKFEVSSIFQNFYHTIETQFHKKNCYSSE
Homology
BLAST of Cmc08g0236391.1 vs. NCBI nr
Match: KAA0066242.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYJ97679.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 488.4 bits (1256), Expect = 4.0e-134
Identity = 240/271 (88.56%), Postives = 252/271 (92.99%), Query Frame = 0

Query: 1   MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQ 60
           M Q   LISVDGTN WILDS ATDHLTGFSEHFVTYTP A NEKIRI +GSLA +AGKGQ
Sbjct: 91  MFQPLDLISVDGTNLWILDSRATDHLTGFSEHFVTYTPCAGNEKIRIVDGSLAPIAGKGQ 150

Query: 61  IVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHS 120
           I+L+DGFSLQ VLHVPKLSYNLLSISKITRELH KATFLPESV FQ+LNSGRTIGTARHS
Sbjct: 151 IILYDGFSLQNVLHVPKLSYNLLSISKITRELHYKATFLPESVYFQNLNSGRTIGTARHS 210

Query: 121 RGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDV 180
           RGLYILNDDTSGSSI TTSLLSSY STSEHD+MLWHFRLGHPNFTYMKYLFP+LFLKIDV
Sbjct: 211 RGLYILNDDTSGSSISTTSLLSSYLSTSEHDYMLWHFRLGHPNFTYMKYLFPHLFLKIDV 270

Query: 181 SLLSCDVCIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTR 240
           S LSCDVCI+AKQ+RVSFPSQPYKPTQ FTLIH+DVWGPSKVTT SGKRWFVTFIDDHTR
Sbjct: 271 SSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWGPSKVTTLSGKRWFVTFIDDHTR 330

Query: 241 LTWVYLITNKFEVSSIFQNFYHTIETQFHKK 272
           LTWVYLIT+K EVS+IFQNFYHTIETQFHKK
Sbjct: 331 LTWVYLITDKSEVSAIFQNFYHTIETQFHKK 361

BLAST of Cmc08g0236391.1 vs. NCBI nr
Match: TYJ99952.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 466.5 bits (1199), Expect = 1.6e-127
Identity = 227/271 (83.76%), Postives = 246/271 (90.77%), Query Frame = 0

Query: 1   MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQ 60
           M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQ
Sbjct: 468 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKIRIADGSLAPIAGKGQ 527

Query: 61  IVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHS 120
           IV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLPESV FQD++SGRTIGTARHS
Sbjct: 528 IVPFDGFALQNVLHVPKLSYNLLSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHS 587

Query: 121 RGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDV 180
           RGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DV
Sbjct: 588 RGLYILDDDTSCSSLSRVSLLSSYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDV 647

Query: 181 SLLSCDVCIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTR 240
           S LSCDVCI+AKQ+RVSFPSQPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTR
Sbjct: 648 SSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIHSDVWGPSKVTTSSGKRWFVTFIDDHTR 707

Query: 241 LTWVYLITNKFEVSSIFQNFYHTIETQFHKK 272
           LTWVYLI++K EV SIFQNFYHTI+TQFH K
Sbjct: 708 LTWVYLISDKSEVPSIFQNFYHTIKTQFHTK 738

BLAST of Cmc08g0236391.1 vs. NCBI nr
Match: TYK08054.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 466.5 bits (1199), Expect = 1.6e-127
Identity = 227/271 (83.76%), Postives = 246/271 (90.77%), Query Frame = 0

Query: 1   MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQ 60
           M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQ
Sbjct: 468 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKIRIADGSLAPIAGKGQ 527

Query: 61  IVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHS 120
           IV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLPESV FQD++SGRTIGTARHS
Sbjct: 528 IVPFDGFALQNVLHVPKLSYNLLSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHS 587

Query: 121 RGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDV 180
           RGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DV
Sbjct: 588 RGLYILDDDTSCSSLSRVSLLSSYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDV 647

Query: 181 SLLSCDVCIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTR 240
           S LSCDVCI+AKQ+RVSFPSQPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTR
Sbjct: 648 SSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIHSDVWGPSKVTTSSGKRWFVTFIDDHTR 707

Query: 241 LTWVYLITNKFEVSSIFQNFYHTIETQFHKK 272
           LTWVYLI++K EV SIFQNFYHTI+TQFH K
Sbjct: 708 LTWVYLISDKSEVPSIFQNFYHTIKTQFHTK 738

BLAST of Cmc08g0236391.1 vs. NCBI nr
Match: KAA0048203.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 466.5 bits (1199), Expect = 1.6e-127
Identity = 227/271 (83.76%), Postives = 246/271 (90.77%), Query Frame = 0

Query: 1   MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQ 60
           M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQ
Sbjct: 468 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKIRIADGSLAPIAGKGQ 527

Query: 61  IVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHS 120
           IV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLPESV FQD++SGRTIGTARHS
Sbjct: 528 IVPFDGFALQNVLHVPKLSYNLLSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHS 587

Query: 121 RGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDV 180
           RGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DV
Sbjct: 588 RGLYILDDDTSCSSLSRVSLLSSYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDV 647

Query: 181 SLLSCDVCIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTR 240
           S LSCDVCI+AKQ+RVSFPSQPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTR
Sbjct: 648 SSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIHSDVWGPSKVTTSSGKRWFVTFIDDHTR 707

Query: 241 LTWVYLITNKFEVSSIFQNFYHTIETQFHKK 272
           LTWVYLI++K EV SIFQNFYHTI+TQFH K
Sbjct: 708 LTWVYLISDKSEVPSIFQNFYHTIKTQFHTK 738

BLAST of Cmc08g0236391.1 vs. NCBI nr
Match: KAA0025363.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 466.5 bits (1199), Expect = 1.6e-127
Identity = 227/271 (83.76%), Postives = 246/271 (90.77%), Query Frame = 0

Query: 1   MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQ 60
           M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQ
Sbjct: 500 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKIRIADGSLAPIAGKGQ 559

Query: 61  IVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHS 120
           IV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLPESV FQD++SGRTIGTARHS
Sbjct: 560 IVPFDGFALQNVLHVPKLSYNLLSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHS 619

Query: 121 RGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDV 180
           RGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DV
Sbjct: 620 RGLYILDDDTSCSSLSRVSLLSSYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDV 679

Query: 181 SLLSCDVCIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTR 240
           S LSCDVCI+AKQ+RVSFPSQPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTR
Sbjct: 680 SSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIHSDVWGPSKVTTSSGKRWFVTFIDDHTR 739

Query: 241 LTWVYLITNKFEVSSIFQNFYHTIETQFHKK 272
           LTWVYLI++K EV SIFQNFYHTI+TQFH K
Sbjct: 740 LTWVYLISDKSEVPSIFQNFYHTIKTQFHTK 770

BLAST of Cmc08g0236391.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.9e-24
Identity = 76/264 (28.79%), Postives = 121/264 (45.83%), Query Frame = 0

Query: 14  NPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVL---FDGFSLQ 73
           N W+LDSGAT H+T    +   + P    + + IA+GS   +   G   L        L 
Sbjct: 308 NNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLN 367

Query: 74  KVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHSRGLYILNDDT 133
           KVL+VP +  NL+S+ ++         F P S   +DLN+G  +   +    LY    + 
Sbjct: 368 KVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELY----EW 427

Query: 134 SGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKI---DVSLLSCDV 193
             +S    S+ +S  S + H    WH RLGHP+   +  +     L +      LLSC  
Sbjct: 428 PIASSQAVSMFASPCSKATHS--SWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSD 487

Query: 194 CIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLI 253
           C   K ++V F +     ++    I++DVW  S + +    R++V F+D  TR TW+Y +
Sbjct: 488 CFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPL 547

Query: 254 TNKFEVSSIFQNFYHTIETQFHKK 272
             K +V   F  F   +E +F  +
Sbjct: 548 KQKSQVKDTFIIFKSLVENRFQTR 564

BLAST of Cmc08g0236391.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-23
Identity = 74/265 (27.92%), Postives = 122/265 (46.04%), Query Frame = 0

Query: 13  TNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFD---GFSL 72
           +N W+LDSGAT H+T    +   + P    + + +A+GS   ++  G   L       +L
Sbjct: 328 SNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNL 387

Query: 73  QKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHSRGLYILNDD 132
             +L+VP +  NL+S+ ++         F P S   +DLN+G  +   +    LY    +
Sbjct: 388 HNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELY----E 447

Query: 133 TSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKI---DVSLLSCD 192
              +S    SL +S  S + H    WH RLGHP  + +  +     L +       LSC 
Sbjct: 448 WPIASSQPVSLFASPSSKATHS--SWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCS 507

Query: 193 VCIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYL 252
            C+  K  +V F       T+    I++DVW  S + +    R++V F+D  TR TW+Y 
Sbjct: 508 DCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYP 567

Query: 253 ITNKFEVSSIFQNFYHTIETQFHKK 272
           +  K +V   F  F + +E +F  +
Sbjct: 568 LKQKSQVKETFITFKNLLENRFQTR 585

BLAST of Cmc08g0236391.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-19
Identity = 72/263 (27.38%), Postives = 125/263 (47.53%), Query Frame = 0

Query: 16  WILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDGFS----LQK 75
           W++D+ A+ H T   + F  Y  +     +++ N S + +AG G I +         L+ 
Sbjct: 294 WVVDTAASHHATPVRDLFCRYV-AGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKD 353

Query: 76  VLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHSRG-LYILNDDT 135
           V HVP L  NL+S   + R+ + ++ F  +      L  G  +     +RG LY  N + 
Sbjct: 354 VRHVPDLRMNLISGIALDRDGY-ESYFANQK---WRLTKGSLVIAKGVARGTLYRTNAEI 413

Query: 136 SGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKI--DVSLLSCDVC 195
               +          +  E    LWH R+GH +   ++ L     +      ++  CD C
Sbjct: 414 CQGELNA--------AQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYC 473

Query: 196 IQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRLTWVYLIT 255
           +  KQ+RVSF +   +      L+++DV GP ++ +  G ++FVTFIDD +R  WVY++ 
Sbjct: 474 LFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILK 533

Query: 256 NKFEVSSIFQNFYHTIETQFHKK 272
            K +V  +FQ F+  +E +  +K
Sbjct: 534 TKDQVFQVFQKFHALVERETGRK 543

BLAST of Cmc08g0236391.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-11
Identity = 72/273 (26.37%), Postives = 117/273 (42.86%), Query Frame = 0

Query: 16  WILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQIVLFDG---FSLQKV 75
           ++LDSGA+DHL      +          KI +A       A K  IV        +L+ V
Sbjct: 289 FVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDV 348

Query: 76  LHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHSRGLYILNDDTSG 135
           L   + + NL+S+ ++              +  +   SG TI       GL ++ +    
Sbjct: 349 LFCKEAAGNLMSVKRLQE----------AGMSIEFDKSGVTIS----KNGLMVVKNSGML 408

Query: 136 SSIFTTSLLSSYFSTSEH--DFMLWHFRLGHPNFTYM-----KYLF--PYLFLKIDVSLL 195
           +++   +   +Y   ++H  +F LWH R GH +   +     K +F    L   +++S  
Sbjct: 409 NNVPVIN-FQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCE 468

Query: 196 SCDVCIQAKQYRVSFPSQPYKP--TQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTRL 255
            C+ C+  KQ R+ F     K    +   ++H+DV GP    T   K +FV F+D  T  
Sbjct: 469 ICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHY 528

Query: 256 TWVYLITNKFEVSSIFQNFYHTIETQFHKKNCY 275
              YLI  K +V S+FQ+F    E  F+ K  Y
Sbjct: 529 CVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVY 546

BLAST of Cmc08g0236391.1 vs. ExPASy TrEMBL
Match: A0A5A7VD20 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00520 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 2.0e-134
Identity = 240/271 (88.56%), Postives = 252/271 (92.99%), Query Frame = 0

Query: 1   MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQ 60
           M Q   LISVDGTN WILDS ATDHLTGFSEHFVTYTP A NEKIRI +GSLA +AGKGQ
Sbjct: 91  MFQPLDLISVDGTNLWILDSRATDHLTGFSEHFVTYTPCAGNEKIRIVDGSLAPIAGKGQ 150

Query: 61  IVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHS 120
           I+L+DGFSLQ VLHVPKLSYNLLSISKITRELH KATFLPESV FQ+LNSGRTIGTARHS
Sbjct: 151 IILYDGFSLQNVLHVPKLSYNLLSISKITRELHYKATFLPESVYFQNLNSGRTIGTARHS 210

Query: 121 RGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDV 180
           RGLYILNDDTSGSSI TTSLLSSY STSEHD+MLWHFRLGHPNFTYMKYLFP+LFLKIDV
Sbjct: 211 RGLYILNDDTSGSSISTTSLLSSYLSTSEHDYMLWHFRLGHPNFTYMKYLFPHLFLKIDV 270

Query: 181 SLLSCDVCIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTR 240
           S LSCDVCI+AKQ+RVSFPSQPYKPTQ FTLIH+DVWGPSKVTT SGKRWFVTFIDDHTR
Sbjct: 271 SSLSCDVCIRAKQHRVSFPSQPYKPTQPFTLIHSDVWGPSKVTTLSGKRWFVTFIDDHTR 330

Query: 241 LTWVYLITNKFEVSSIFQNFYHTIETQFHKK 272
           LTWVYLIT+K EVS+IFQNFYHTIETQFHKK
Sbjct: 331 LTWVYLITDKSEVSAIFQNFYHTIETQFHKK 361

BLAST of Cmc08g0236391.1 vs. ExPASy TrEMBL
Match: A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.9e-128
Identity = 227/271 (83.76%), Postives = 246/271 (90.77%), Query Frame = 0

Query: 1   MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQ 60
           M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQ
Sbjct: 468 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKIRIADGSLAPIAGKGQ 527

Query: 61  IVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHS 120
           IV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLPESV FQD++SGRTIGTARHS
Sbjct: 528 IVPFDGFALQNVLHVPKLSYNLLSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHS 587

Query: 121 RGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDV 180
           RGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DV
Sbjct: 588 RGLYILDDDTSCSSLSRVSLLSSYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDV 647

Query: 181 SLLSCDVCIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTR 240
           S LSCDVCI+AKQ+RVSFPSQPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTR
Sbjct: 648 SSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIHSDVWGPSKVTTSSGKRWFVTFIDDHTR 707

Query: 241 LTWVYLITNKFEVSSIFQNFYHTIETQFHKK 272
           LTWVYLI++K EV SIFQNFYHTI+TQFH K
Sbjct: 708 LTWVYLISDKSEVPSIFQNFYHTIKTQFHTK 738

BLAST of Cmc08g0236391.1 vs. ExPASy TrEMBL
Match: A0A5D3C4T4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00040 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.9e-128
Identity = 227/271 (83.76%), Postives = 246/271 (90.77%), Query Frame = 0

Query: 1   MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQ 60
           M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQ
Sbjct: 468 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKIRIADGSLAPIAGKGQ 527

Query: 61  IVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHS 120
           IV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLPESV FQD++SGRTIGTARHS
Sbjct: 528 IVPFDGFALQNVLHVPKLSYNLLSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHS 587

Query: 121 RGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDV 180
           RGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DV
Sbjct: 588 RGLYILDDDTSCSSLSRVSLLSSYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDV 647

Query: 181 SLLSCDVCIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTR 240
           S LSCDVCI+AKQ+RVSFPSQPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTR
Sbjct: 648 SSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIHSDVWGPSKVTTSSGKRWFVTFIDDHTR 707

Query: 241 LTWVYLITNKFEVSSIFQNFYHTIETQFHKK 272
           LTWVYLI++K EV SIFQNFYHTI+TQFH K
Sbjct: 708 LTWVYLISDKSEVPSIFQNFYHTIKTQFHTK 738

BLAST of Cmc08g0236391.1 vs. ExPASy TrEMBL
Match: A0A5A7VLQ7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00690 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.9e-128
Identity = 227/271 (83.76%), Postives = 246/271 (90.77%), Query Frame = 0

Query: 1   MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQ 60
           M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQ
Sbjct: 468 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKIRIADGSLAPIAGKGQ 527

Query: 61  IVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHS 120
           IV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLPESV FQD++SGRTIGTARHS
Sbjct: 528 IVPFDGFALQNVLHVPKLSYNLLSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHS 587

Query: 121 RGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDV 180
           RGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DV
Sbjct: 588 RGLYILDDDTSCSSLSRVSLLSSYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDV 647

Query: 181 SLLSCDVCIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTR 240
           S LSCDVCI+AKQ+RVSFPSQPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTR
Sbjct: 648 SSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIHSDVWGPSKVTTSSGKRWFVTFIDDHTR 707

Query: 241 LTWVYLITNKFEVSSIFQNFYHTIETQFHKK 272
           LTWVYLI++K EV SIFQNFYHTI+TQFH K
Sbjct: 708 LTWVYLISDKSEVPSIFQNFYHTIKTQFHTK 738

BLAST of Cmc08g0236391.1 vs. ExPASy TrEMBL
Match: A0A5A7SM64 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00220 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.9e-128
Identity = 227/271 (83.76%), Postives = 246/271 (90.77%), Query Frame = 0

Query: 1   MSQSFGLISVDGTNPWILDSGATDHLTGFSEHFVTYTPSASNEKIRIANGSLASVAGKGQ 60
           M QS GLISVDG NPWILDSGATDHLTG SEHF++Y P A NEKIRIA+GSLA +AGKGQ
Sbjct: 468 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKIRIADGSLAPIAGKGQ 527

Query: 61  IVLFDGFSLQKVLHVPKLSYNLLSISKITRELHCKATFLPESVCFQDLNSGRTIGTARHS 120
           IV FDGF+LQ VLHVPKLSYNLLSISKITRELHCKA FLPESV FQD++SGRTIGTARHS
Sbjct: 528 IVPFDGFALQNVLHVPKLSYNLLSISKITRELHCKAIFLPESVYFQDMSSGRTIGTARHS 587

Query: 121 RGLYILNDDTSGSSIFTTSLLSSYFSTSEHDFMLWHFRLGHPNFTYMKYLFPYLFLKIDV 180
           RGLYIL+DDTS SS+   SLLSSYFSTSE D MLWHFRLGHPNFTYM++LFP+LF K+DV
Sbjct: 588 RGLYILDDDTSCSSLSRVSLLSSYFSTSEQDCMLWHFRLGHPNFTYMQHLFPHLFSKVDV 647

Query: 181 SLLSCDVCIQAKQYRVSFPSQPYKPTQSFTLIHNDVWGPSKVTTSSGKRWFVTFIDDHTR 240
           S LSCDVCI+AKQ+RVSFPSQPYKPTQ F LIH+DVWGPSKVTTSSGKRWFVTFIDDHTR
Sbjct: 648 SSLSCDVCIRAKQHRVSFPSQPYKPTQPFNLIHSDVWGPSKVTTSSGKRWFVTFIDDHTR 707

Query: 241 LTWVYLITNKFEVSSIFQNFYHTIETQFHKK 272
           LTWVYLI++K EV SIFQNFYHTI+TQFH K
Sbjct: 708 LTWVYLISDKSEVPSIFQNFYHTIKTQFHTK 738

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0066242.14.0e-13488.56Beta-galactosidase [Cucumis melo var. makuwa] >TYJ97679.1 Beta-galactosidase [Cu... [more]
TYJ99952.11.6e-12783.76Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cu... [more]
TYK08054.11.6e-12783.76Beta-galactosidase [Cucumis melo var. makuwa][more]
KAA0048203.11.6e-12783.76Beta-galactosidase [Cucumis melo var. makuwa][more]
KAA0025363.11.6e-12783.76Beta-galactosidase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q9ZT947.9e-2428.79Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW22.3e-2327.92Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P109781.5e-1927.38Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041462.6e-1126.37Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A0A5A7VD202.0e-13488.56Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00... [more]
A0A5D3BJK77.9e-12883.76Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0... [more]
A0A5D3C4T47.9e-12883.76Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00... [more]
A0A5A7VLQ77.9e-12883.76Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G0... [more]
A0A5A7SM647.9e-12883.76Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G0... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 122..193
e-value: 3.0E-15
score: 55.8
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 200..275
e-value: 1.0E-9
score: 40.0
NoneNo IPR availablePANTHERPTHR34222:SF50SUBFAMILY NOT NAMEDcoord: 14..131
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 14..131
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 203..271

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cmc08g0236391Cmc08g0236391gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc08g0236391.1-exonCmc08g0236391.1-exon-CMiso1.1chr08:32744555..32745388exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc08g0236391.1-cdsCmc08g0236391.1-cds-CMiso1.1chr08:32744555..32745388CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cmc08g0236391.1Cmc08g0236391.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005525 GTP binding