Cmc08g0236101.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc08g0236101.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	zinc finger CCCH domain-containing protein 25
Location	CMiso1.1chr08: 32433635 .. 32438126 (+)
Sequence length	2036
RNA-Seq Expression	Cmc08g0236101.1
Synteny	Cmc08g0236101.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGACATCCCCCTCCCCTCTCTCGAATTTTCTCAACGCCAGCCATCGCGCGCGCGCCGGCAAACTCCTACCCTCTCCGCACGTCAGCCGCGAAGCACGCCGGAAACGACGCAACTCACCGACTCCGACGACCCTCCTCCGACGTCCACCCCGCGAACGCTGCCGTTGTCCGACCCATCTTCACCGCCGCTCCAGCCAGATGTTGAACGCGGGCTTCGTCACGCCGTTGCAGTCCGCAAAAGTGCGCTGCCTGCTTCCTGCATTTGATTTGAGTCGCTCCTTTTTATCATAATACCGTTAGCGACTCTCGTTCTCGCCGGTTGTTGGATCTTGGAGTTTTGGGTAAGGATTTGCTTATTTTAGCGTATTTTAGTTGGGTTTGTTGAAGATTTTCGAATACCCGTTAAGTTTTGGCGTTGATTTTGCAAGACCCATTACATTTCGTCGTTAAATTTGGAGTCTTGGGAGATTTTAGCCGCTGTCCTGCCTTTAGGAAGCTCGGAATTGGTTTTTTTAGCACAACCTGGATAAAATTCTAAGCTTTATGAAGTGCGTATTGAATACCCATTTAATTCTAGTGCTAATATTGAATAGCCCATGATATTGGTAGCTAGAAGGTCGTTAGGGTGCCGTCCATTAGTTAAGACTACTTTGTTAAGTGTTTGATAAGATTTCATTCATAGTTGATTTTCCATGGAATTTTTGAACGATTGTTGAATTTTGGCTTCAAATTGGTGATACCTATTAAGTGTTTGGAGCAAAATCAATTTACCCATAATTTTGGATGCTAGACTCGAGTTTAGAAAGCCATTAGAGTGTTGTCCATTGAAGTTGTGGTTATTTGTAAGTCTTTGGTAGGATTTTGGGAAACTCTAGTAAGTTTTCTTGGAGTCTTTGAATACCCATCTAGTGTTGACATGAAATTTATGTTACCCATGTTGTTTTGTACGAGAGATTGAAGATTTGGAGAACTTGGAAGCATAGATCAATACATTTAAGGTTGTTTTAGACAAGTTTGGGTAAGTTCTTAAGTTATTGACTTGTTAGTTCAACGTTGAGGGTGTCAGTAGATCTAAATCTCTTAATTTATTAATATTGGGTTTAAGGGTGTATTTAAATGAGGGATCCTTTAAGTTTGACTCAAATCTAGATACACATTGGATTAAGAGTTTAAATTGGGAGTTTAAAGGTCCAAAGGTGGAACTTTAGCCTCAATCAAGACTTTCGGGGAATATTTCAATCCCAATCTTGGAAGTGAGGAACTCGAGTCCTTGAACCATAAAATAGCTTGTGTTGTCGTAATGAAGTGTTTTGAAAATTGTTATGTCGTCTTTCCTTTTGAAGACAATTGATGTGACCTTAATCTTTGTATCAATTTTGCCCCAGGGGAACAGGTATTTCGGTTTCGATTTTGATTTCCAACTTAGCTATGAATCCTTTAACCCTCGTCAAACGCATCCAGAAAATCAATTCTCAAGAGGCAGCGCTTGGGATTTCTGAGGAAGCTTCATGGCATGCCAAATACAAAGATTCCGCCTACGTTTTCGTCGGAGGCATTCCTTATGATCTCACTGAGGGTGATCTCCTTGCCGTCTTCGCCCAGTAAGTCCACAATTCTATCTATTTTCTCCCCCCTCGTTATTTTTATTTTGCTCTCTTGCAGCTCTTTTTCGTATTTACTTGATAGATTGTGTAGTTGGATAAGTTTAGATTGAGATGTTGTGCTAGATTTGTGTGTTTGACATTGAAATGAATTATTTCTCCCTTGGTCGTGGTCTTGTTGTTCCAGTAGCTTCTAAATTGGACTCTGCTGGTAGTGACGAAAATTTATGGGGTTCTGTGTAAGTAGAAGAATTTGTTTGTAGGTTGTTGTAAATCGTTTTTAGTCGACAATCCTAGTTACTTAGAATTGGTAACTTAAGAGGTGGAGTTGATGTTTCAAGTTGTGCAAATAGACTAATTGAGCTCATAGTTGTTACTCCAGTAGATTTTGTTGTTTCTTGTAGTGTCAGCTTTTCCTATTTTACAATTCATCTTCATTGTGACCTCGGAGGGGCAACCATATGAGAAGGGTTGGGATGTTTGAAGATACCTCTTTAGGTCCTAGGTTTATATCTCAGGTGGAAAACTCGGCTCCGATTGGTAATATTTGGTTTATTGTTTTTAGTTTTTGAAAATTAAGCGTAGACATCCATCACAATTTCATCTCTCCCCTTTGTGTTTTTAGATGTGATTAAGAATTCAATTCTTTCACTTAAAAAGTATGCAAATCATGGTAAGAAAATGAGAGCATATAGGCTTGGTTTTTGAAAACTAAAAACTAAATGGTTACAAAACAGGGCCTAAGGTACTCAAAACCTTTGTTTTCTCGCTGGAGCTAGCCTTGGTGTGGGGAAGGCCTCTTGGCAACTAGCAGGGTAGGTTCTATGCATGATGCTAGAAGAGCTCTTTGATATCTTGGTTTATGTGTGCGTGTGTAATCACATTTATTTCAATTAATAAAAGAATCCTTTTCTTCTTCCCTGCCTTTTCACCGTTTAGTTGTCTGTAAATGCACTTTTAAGGTTACATGTTCACTTGTGGGTCATTTGCGTTTTTTGAATATTGAAATATATTTGAACGTACAGGTACGGAGAGATTGTAGATGTCAATCTTATCAGAGACAAGGGTACGGGAAAATCAAAAGGCTATGCCTTTGTTGCATATGAAGACCAGAGAAGTACAAATCTTGCTGTAGGTTGTCTCCTTCTCCTCTCTCTAAACCGTTCATTGTTTGTTATATGGGACTGAATGCAGATCTCTAAGTAATGTTGTTTGTCGCTTTCAGATAATTTGAATGGTGCACAGATTCTAGGTCGAATTGTTAGGGTTGATCATGCGTCTAAATATAAAAAGAAGGAAGAGGAAGATGAAGAAGAACAACAAAAAAAGAGGGAAGCTCGGGGTGTTTGTCGTGCCTTTCAAAGGGGTGAATGTACTCGCGGAGCTGGATGCAAATTCTCCCATGATGAGCAGGTATGTGTGAGACCTTCTGTTATGTAAATTTTCTCTAGAAAGGATAGAAAGGGGTTTTGATCCCTGACAGTTTGTTAATAATGGGAAGAAGGGATGGTTTGATGTATAGCTAAGGAAGTTTGTTGTTTTTTGTAGGGGAAATATCTTCGTGTTTAGCTTTTACCTTTGATGTTACTAGCTAGTTATGTCTGAATTGAATAAAAGAAGTTTGAAGACTATTTTTTCTTCAGCATGCTTCGATTAGAGTTTTAGCTTTACTTTAAGAAATTTGATGCATGGAGATTGTTCGTGTTTTAGAGAGCTGCAGACACAGGCTGGGGGGTGGCAGAAGATGCAAGTTCAAAATGGGGGCATGACAAGTTTGACGGTAGAAAAAATGACAACAAAGAATTACGTGCAAAAGGAAGGAAAAATAGTGATAACTTAGGAAGACATCCAAGGGAAACTAGTGGGAGTCTGAGGCAGGAAAATAGACTGAAAGGTTGTGATGATAGTAAAGAATCAGAGCTCAAGTCAAGAGAGGATCATGGCGAGAAAGATGAGAAGAGATCGAGAAGATATGATCTTGATGGCAATCCTGATCCGAAGTCAGGAGATGATCATTATAAAAGGGAAGAGAAGAGATCTAGAAGGAACCACGATGATAACAGGAAAGACGAGAAAAGATCAAGAAAACATGACGATGATGATGAGATGAAATCTGAAGATGATCGCTATAGGAAGGAAGAAAATAGGTATAGAAGGAACCAAGACAATGAACTCCCACAGCATTCGAGAAGAGACTACAATACAAGGGAAGAAGACAGATCATCAAAAAGGCATGGCGACGGAGAGTATCCGCCAAAGCTGAGGGAAGATGATAAAAGAAGGGAAAGAGATATATCAGTAAGACATCGCTCAGAATCACATAGGAGGGAAAATCCAGATGAGAAGAGAGATTATTGGTCCTCTCAGGGTGGTAGAGATTCTTCATCACATTCTCATAGAGAAAGAAATGAGGACTGTCATAGATAAAATGAACGACTACACAACATATCATCATGGTTAGTCCTCTCGTGCTAAGTTCCAACATTATAGTAGAACATAATTTGGTTTTGTGATGGCCTGTTTTGTTTCCTTGTATTGTATTGGCAACCTTTTTTTGGCCACTCACTATTTGTACTATCAAAATAGGTAGTAACTCTTTGATGCGGAAATCTCTGAGTAGAAAAGGTAAAGTACATGCTTAGGAGAATAAAATATAGGAATTAATTTTCTACAAGTTTCCTTGACGCTCAAATGTTGTAGGTCAGGTGGGTTGTCCCAATAGATTAGCTGAGATGCGTGTAAGCTAGCATTTTATGAATATTAGAAAAAAGAAGAAAAAAAGGTTTATGCTTGTGAGTGATGGTGGAGGATTGTATATTGATCATTTGAATATTCTTAATTTCTTCTTATCCAATTGGTATAACCATTCAAGTTGCAATTAAATGTTGGT

mRNA sequence

GTCGACATCCCCCTCCCCTCTCTCGAATTTTCTCAACGCCAGCCATCGCGCGCGCGCCGGCAAACTCCTACCCTCTCCGCACGTCAGCCGCGAAGCACGCCGGAAACGACGCAACTCACCGACTCCGACGACCCTCCTCCGACGTCCACCCCGCGAACGCTGCCGTTGTCCGACCCATCTTCACCGCCGCTCCAGCCAGATGTTGAACGCGGGCTTCGTCACGCCGTTGCAGTCCGCAAAAGTGCGCTGCCTGCTTCCTGCATTTGATTTGAGTCGCTCCTTTTTATCATAATACCGTTAGCGACTCTCGTTCTCGCCGGTTGTTGGATCTTGGAGTTTTGGGGGAACAGGTATTTCGGTTTCGATTTTGATTTCCAACTTAGCTATGAATCCTTTAACCCTCGTCAAACGCATCCAGAAAATCAATTCTCAAGAGGCAGCGCTTGGGATTTCTGAGGAAGCTTCATGGCATGCCAAATACAAAGATTCCGCCTACGTTTTCGTCGGAGGCATTCCTTATGATCTCACTGAGGGTGATCTCCTTGCCGTCTTCGCCCAGTACGGAGAGATTGTAGATGTCAATCTTATCAGAGACAAGGGTACGGGAAAATCAAAAGGCTATGCCTTTGTTGCATATGAAGACCAGAGAAGTACAAATCTTGCTGTAGATAATTTGAATGGTGCACAGATTCTAGGTCGAATTGTTAGGGTTGATCATGCGTCTAAATATAAAAAGAAGGAAGAGGAAGATGAAGAAGAACAACAAAAAAAGAGGGAAGCTCGGGGTGTTTGTCGTGCCTTTCAAAGGGGTGAATGTACTCGCGGAGCTGGATGCAAATTCTCCCATGATGAGCAGAGAGCTGCAGACACAGGCTGGGGGGTGGCAGAAGATGCAAGTTCAAAATGGGGGCATGACAAGTTTGACGGTAGAAAAAATGACAACAAAGAATTACGTGCAAAAGGAAGGAAAAATAGTGATAACTTAGGAAGACATCCAAGGGAAACTAGTGGGAGTCTGAGGCAGGAAAATAGACTGAAAGGTTGTGATGATAGTAAAGAATCAGAGCTCAAGTCAAGAGAGGATCATGGCGAGAAAGATGAGAAGAGATCGAGAAGATATGATCTTGATGGCAATCCTGATCCGAAGTCAGGAGATGATCATTATAAAAGGGAAGAGAAGAGATCTAGAAGGAACCACGATGATAACAGGAAAGACGAGAAAAGATCAAGAAAACATGACGATGATGATGAGATGAAATCTGAAGATGATCGCTATAGGAAGGAAGAAAATAGGTATAGAAGGAACCAAGACAATGAACTCCCACAGCATTCGAGAAGAGACTACAATACAAGGGAAGAAGACAGATCATCAAAAAGGCATGGCGACGGAGAGTATCCGCCAAAGCTGAGGGAAGATGATAAAAGAAGGGAAAGAGATATATCAGTAAGACATCGCTCAGAATCACATAGGAGGGAAAATCCAGATGAGAAGAGAGATTATTGGTCCTCTCAGGGTGGTAGAGATTCTTCATCACATTCTCATAGAGAAAGAAATGAGGACTGTCATAGATAAAATGAACGACTACACAACATATCATCATGGTTAGTCCTCTCGTGCTAAGTTCCAACATTATAGTAGAACATAATTTGGTTTTGTGATGGCCTGTTTTGTTTCCTTGTATTGTATTGGCAACCTTTTTTTGGCCACTCACTATTTGTACTATCAAAATAGGTAGTAACTCTTTGATGCGGAAATCTCTGAGTAGAAAAGGTAAAGTACATGCTTAGGAGAATAAAATATAGGAATTAATTTTCTACAAGTTTCCTTGACGCTCAAATGTTGTAGGTCAGGTGGGTTGTCCCAATAGATTAGCTGAGATGCGTGTAAGCTAGCATTTTATGAATATTAGAAAAAAGAAGAAAAAAAGGTTTATGCTTGTGAGTGATGGTGGAGGATTGTATATTGATCATTTGAATATTCTTAATTTCTTCTTATCCAATTGGTATAACCATTCAAGTTGCAATTAAATGTTGGT

Coding sequence (CDS)

ATGAATCCTTTAACCCTCGTCAAACGCATCCAGAAAATCAATTCTCAAGAGGCAGCGCTTGGGATTTCTGAGGAAGCTTCATGGCATGCCAAATACAAAGATTCCGCCTACGTTTTCGTCGGAGGCATTCCTTATGATCTCACTGAGGGTGATCTCCTTGCCGTCTTCGCCCAGTACGGAGAGATTGTAGATGTCAATCTTATCAGAGACAAGGGTACGGGAAAATCAAAAGGCTATGCCTTTGTTGCATATGAAGACCAGAGAAGTACAAATCTTGCTGTAGATAATTTGAATGGTGCACAGATTCTAGGTCGAATTGTTAGGGTTGATCATGCGTCTAAATATAAAAAGAAGGAAGAGGAAGATGAAGAAGAACAACAAAAAAAGAGGGAAGCTCGGGGTGTTTGTCGTGCCTTTCAAAGGGGTGAATGTACTCGCGGAGCTGGATGCAAATTCTCCCATGATGAGCAGAGAGCTGCAGACACAGGCTGGGGGGTGGCAGAAGATGCAAGTTCAAAATGGGGGCATGACAAGTTTGACGGTAGAAAAAATGACAACAAAGAATTACGTGCAAAAGGAAGGAAAAATAGTGATAACTTAGGAAGACATCCAAGGGAAACTAGTGGGAGTCTGAGGCAGGAAAATAGACTGAAAGGTTGTGATGATAGTAAAGAATCAGAGCTCAAGTCAAGAGAGGATCATGGCGAGAAAGATGAGAAGAGATCGAGAAGATATGATCTTGATGGCAATCCTGATCCGAAGTCAGGAGATGATCATTATAAAAGGGAAGAGAAGAGATCTAGAAGGAACCACGATGATAACAGGAAAGACGAGAAAAGATCAAGAAAACATGACGATGATGATGAGATGAAATCTGAAGATGATCGCTATAGGAAGGAAGAAAATAGGTATAGAAGGAACCAAGACAATGAACTCCCACAGCATTCGAGAAGAGACTACAATACAAGGGAAGAAGACAGATCATCAAAAAGGCATGGCGACGGAGAGTATCCGCCAAAGCTGAGGGAAGATGATAAAAGAAGGGAAAGAGATATATCAGTAAGACATCGCTCAGAATCACATAGGAGGGAAAATCCAGATGAGAAGAGAGATTATTGGTCCTCTCAGGGTGGTAGAGATTCTTCATCACATTCTCATAGAGAAAGAAATGAGGACTGTCATAGATAA

Protein sequence

MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEEEDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFDGRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEKRSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKEENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSESHRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR

Homology

[Close]

BLAST of Cmc08g0236101.1 vs. NCBI nr
Match: XP_008449221.1 (PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo] >KAA0045039.1 zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 752.3 bits (1941), Expect = 2.1e-213
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180
           EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD
Sbjct: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240
           GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240

Query: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300
           RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE
Sbjct: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360
           ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360

Query: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR 396
           HRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR
Sbjct: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR 395

[Close]

BLAST of Cmc08g0236101.1 vs. NCBI nr
Match: XP_008449231.1 (PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X2 [Cucumis melo])

HSP 1 Score: 740.7 bits (1911), Expect = 6.4e-210
Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180
           EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD
Sbjct: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240
           GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240

Query: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300
           RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE
Sbjct: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360
           ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360

Query: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERN 391
           HRRENPDEKRDYWSSQGGRDSSSHSHRERN
Sbjct: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERN 390

[Close]

BLAST of Cmc08g0236101.1 vs. NCBI nr
Match: TYJ96288.1 (zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 721.5 bits (1861), Expect = 4.0e-204
Identity = 395/464 (85.13%), Postives = 395/464 (85.13%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ-- 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQGN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  HMRRVGMFEDTSLGPRFISQVENSAPIDVIKNSILSLKKYANHGTQNLCFLAGASLGVGK 120

Query: 121 -------YGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH 180
                  YGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH
Sbjct: 121 ASWQLAGYGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH 180

Query: 181 ASKYKKKEEEDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDAS 240
           ASKYKKKEEEDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDAS
Sbjct: 181 ASKYKKKEEEDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDAS 240

Query: 241 SKWGHDKFDGRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSR 300
           SKWGHDKFDGRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSR
Sbjct: 241 SKWGHDKFDGRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSR 300

Query: 301 EDHGEKDEKRSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMK 360
           EDHGEKDEKRSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMK
Sbjct: 301 EDHGEKDEKRSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMK 360

Query: 361 SEDDRYRKEENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERD 396
           SEDDRYRKEENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERD
Sbjct: 361 SEDDRYRKEENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERD 420

[Close]

BLAST of Cmc08g0236101.1 vs. NCBI nr
Match: XP_004147921.1 (zinc finger CCCH domain-containing protein 25 [Cucumis sativus] >KGN54364.1 hypothetical protein Csa_018037 [Cucumis sativus])

HSP 1 Score: 687.6 bits (1773), Expect = 6.5e-194
Identity = 369/395 (93.42%), Postives = 375/395 (94.94%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH SKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180
           EDEEE+QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWG AEDASSKWGHDKFD
Sbjct: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDASSKWGHDKFD 180

Query: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240
            RKN +KEL AKGRK SDNLGRHPRETSGSLRQENR +G DDSKESELKSREDHG KDEK
Sbjct: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240

Query: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300
           RSRRYDLDGN DPKSGDD YK EEKRS RNHDDNRKDEKRSRKHD+DDEMK EDDRYRKE
Sbjct: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360
           ENRYRRNQDNELPQHSRRDY TREEDRSSKRHGD EYPPKLREDDKRRERD+SVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES 360

Query: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR 396
           +RRENPDEKRDY SS GGRDSSSHSHRERNED  R
Sbjct: 361 YRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR 395

[Close]

BLAST of Cmc08g0236101.1 vs. NCBI nr
Match: TYK15418.1 (zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 666.8 bits (1719), Expect = 1.2e-187
Identity = 361/397 (90.93%), Postives = 372/397 (93.70%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRI+RVDH SKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180
           EDEEE+QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWG AEDASSKWGHDKFD
Sbjct: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180

Query: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240
            R N +KELRAKGRKNSD+LGRHPRETSGSLRQENR KG DDSK SELK REDH  +DEK
Sbjct: 181 SRTNHDKELRAKGRKNSDDLGRHPRETSGSLRQENRPKGWDDSKGSELKPREDHWRRDEK 240

Query: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNH--DDNRKDEKRSRKHDDDDEMKSEDDRYR 300
           RSRRYDLDGNPDPK GDD YKREEKRS RNH  DDNRKDEKRSRKHD+D+EMK EDDRYR
Sbjct: 241 RSRRYDLDGNPDPKLGDDRYKREEKRSTRNHEYDDNRKDEKRSRKHDNDEEMKLEDDRYR 300

Query: 301 KEENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRS 360
           KEENRYRRNQDNELPQHSRR+YNTREEDRSSKRHGD EY PKL EDDKRRERDISVRHRS
Sbjct: 301 KEENRYRRNQDNELPQHSRRNYNTREEDRSSKRHGDEEYQPKLGEDDKRRERDISVRHRS 360

Query: 361 ESHRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR 396
           ESHRRENP+EKRD+ SS GGRDSSSHSH ERNED  R
Sbjct: 361 ESHRRENPNEKRDFRSSHGGRDSSSHSHTERNEDRRR 397

[Close]

BLAST of Cmc08g0236101.1 vs. ExPASy Swiss-Prot
Match: Q10B98 (Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0826400 PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.5e-76
Identity = 176/319 (55.17%), Postives = 221/319 (69.28%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VKR Q IN +EA LGI E+ SWHAK+KDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTQVKRTQVINQKEALLGIGEDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           E+VDVNL+RDKGTGKSKG+AF+AYEDQRST LAVDNLNGA++LGRIVRVDH SKYKKKEE
Sbjct: 61  EVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSKYKKKEE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180
           EDEEE QKKREARGVC AFQ+GEC RGA C++SHDEQR A+TGWG  E++ ++W HD+  
Sbjct: 121 EDEEELQKKREARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHH 180

Query: 181 GRKNDNKEL-RAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDE 240
                +K+   + G +   +  +   +++G   Q +R +   D ++S L+   D G KD 
Sbjct: 181 EPPMSHKKFPSSAGEQRFPDRAKEENKSTGREGQSSRSEAYKD-RDSRLR-HSDRGSKDH 240

Query: 241 KRSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRK 300
            R R    D +P+   GD   +R   R  +  D+  +  +   KHD+ D+ +S  D    
Sbjct: 241 DRYRH---DRSPERSRGD--RQRNNDRYAQGRDEKSERYRSEVKHDEGDQKRSRRDTDSS 300

Query: 301 EENRYRRNQDNELPQHSRR 319
                R N+D+E  + SRR
Sbjct: 301 GHYERRGNEDSERYRKSRR 312

[Close]

BLAST of Cmc08g0236101.1 vs. ExPASy Swiss-Prot
Match: Q9SD61 (Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=At3g47120 PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.4e-71
Identity = 190/356 (53.37%), Postives = 235/356 (66.01%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK +QKIN++E+ LGIS+EASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+QYG
Sbjct: 1   MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIVDVNLIRDKGTGKSKG+AF+AYEDQRST LAVDNLNGA +LGR ++VDH   YKK EE
Sbjct: 61  EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDK-F 180
           EDEE +++ REARGVCRAFQRGECTRG  CKFSHDE+RAA+TGWG  ED SSKW HDK  
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNR 180

Query: 181 DGRKNDNKELRAKGRKNSDNLGRHPRE---TSGSLRQENRLKGCDDSKESELK------- 240
           +GR       R +  +       H  +   T+G   +E+R    D  K +  K       
Sbjct: 181 EGRGVCRAFQRGECTRGDSCKFSHDEKRAATTGWGHEEDRSSKWDQDKLNGAKKGGTSFG 240

Query: 241 SREDHGEKDEKRSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDD---------NRKDEKR 300
           +R D     E++S R    G  D   GD  Y R ++R R + +D         + K++KR
Sbjct: 241 NRGDFKPDVEEKSYR----GRGD---GDASYGRPKERERVDREDMGPRSRDAYDMKEQKR 300

Query: 301 SRKHDDDDEMKSEDDRYRKEENRYRRNQDNELPQ-HSRRDYNTREE-DRSSKRHGD 335
           S ++D+    +  D+     E++  R QD E  +  SRRD N REE DR S R  D
Sbjct: 301 SGRYDNAYSRRHNDEIDYVREDKGSRAQDWEKRKAESRRDRNDREEKDRDSLRRED 349

[Close]

BLAST of Cmc08g0236101.1 vs. ExPASy Swiss-Prot
Match: Q8R0F5 (RNA-binding motif protein, X-linked 2 OS=Mus musculus OX=10090 GN=Rbmx2 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-33
Identity = 125/364 (34.34%), Postives = 184/364 (50.55%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK I ++N +E  LG++E+ SWH++YK SA++FVGG+PY+LTEGD++ VF+QYG
Sbjct: 1   MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIV++NL+RDK TGKSKG+ F+ YEDQRST LAVDN NG +I GR +RVDH S Y+  +E
Sbjct: 61  EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRAPQE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180
            ++ +         V R  Q     +G G K              V+ED  +K       
Sbjct: 121 SEDVDD--------VTRELQE----KGCGVKTPPSSPPE------VSEDEDAKLTKK--- 180

Query: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240
             K D KE +           R   +T G  + E     C  S+ + +K +     KDE+
Sbjct: 181 -HKKDKKEKKK----------RKKEKTEGQAQAEQ--PSC--SRSATVKEK-----KDER 240

Query: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300
            SR++        K+ +   K E + S+++H  +           +D E K+  ++ + E
Sbjct: 241 ASRKH------SSKTSERAQKSEHRESKKSHSGSPDGRSSYHARAEDPECKARKEKPKHE 300

Query: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360
                R +  E  +   R  ++       + H DG      R   + R  D S RH+   
Sbjct: 301 HKSASRREAEEKSRERERGRSSGTHSGRHRGHSDGR---SHRSRSRSRSPDKSHRHKKYR 314

Query: 361 HRRE 365
           H RE
Sbjct: 361 HSRE 314

[Close]

BLAST of Cmc08g0236101.1 vs. ExPASy Swiss-Prot
Match: B0BN49 (RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus OX=10116 GN=Rbmx2 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.9e-33
Identity = 131/377 (34.75%), Postives = 192/377 (50.93%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK I ++N +E  LG++E+ SWH++YKDSA++F+GG+PY+LTEGD++ VF+QYG
Sbjct: 1   MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIV++NL+RDK TGKSKG+ F+ YEDQRST LAVDN NG +I GR +RVDH + Y+  +E
Sbjct: 61  EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRAPQE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180
            ++ +         V R  Q     +G G K              V+ED  +K       
Sbjct: 121 SEDVDD--------VTRELQE----KGCGAKTPPSSPPE------VSEDEDAKVTKKP-- 180

Query: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240
             K D KE + K  K      +  R     L   +R K     KE++ +S + H  K  +
Sbjct: 181 --KKDKKEKKKKKEKE-----KTERPVQAELPSCSRSK---TVKETDEQSAKKHSSKPSE 240

Query: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300
           R+++ +               RE K+S     D R    R R  + + E K E  ++  +
Sbjct: 241 RAQKSEC--------------RERKKSHSGSPDGR-TSCRGRAEEPEWEAKKEKHKHEHK 300

Query: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGE-YPPKLREDDKRRERDISVRHRSE 360
            +  R  ++    +   R   T     SS+ HG  E    + R   + R  D S RH+  
Sbjct: 301 PSSRREGEEKSRDKDRGRSSGT----HSSRHHGHSEGRSHRSRSRSRSRSPDRSHRHKKH 328

Query: 361 --SHRRE--NPDEKRDY 373
             SH RE  +  ++R Y
Sbjct: 361 RYSHERESFHASDRRHY 328

[Close]

BLAST of Cmc08g0236101.1 vs. ExPASy Swiss-Prot
Match: Q9Y388 (RNA-binding motif protein, X-linked 2 OS=Homo sapiens OX=9606 GN=RBMX2 PE=1 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-32
Identity = 130/373 (34.85%), Postives = 191/373 (51.21%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK I ++N +E  LG++++ SWH++YKDSA++F+GG+PY+LTEGD++ VF+QYG
Sbjct: 1   MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIV++NL+RDK TGKSKG+ F+ YEDQRST LAVDN NG +I GR +RVDH S Y+  ++
Sbjct: 61  EIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKD 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180
            +E +         V R  Q   C  GA        + + D      E  + K   DK +
Sbjct: 121 SEEIDD--------VTRQLQEKGC--GARTPSPSLSESSED------EKPTKKHKKDKKE 180

Query: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240
            +K      + K ++ +D   +  + +S S R++         KE +    + H  K+ +
Sbjct: 181 KKK------KKKEKEKADREVQAEQPSSSSPRRKT-------VKEKDDTGPKKHSSKNSE 240

Query: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300
           R+++       +P+ G    K     S    D  R+ +K   KH    E KS   R  +E
Sbjct: 241 RAQK------SEPREGQKLPKSRTAYSGGAEDLERELKKEKPKH----EHKSSSRREARE 300

Query: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRH---- 360
           E    R++      HS   YN R E RS +               + R RD S RH    
Sbjct: 301 EKTRIRDRGRSSDAHSSW-YNGRSEGRSYR--------------SRSRSRDKSHRHKRAR 319

Query: 361 RSESHRRENPDEK 370
           RS      NP ++
Sbjct: 361 RSRERESSNPSDR 319

[Close]

BLAST of Cmc08g0236101.1 vs. ExPASy TrEMBL
Match: A0A5A7TUW9 (Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G00260 PE=4 SV=1)

HSP 1 Score: 752.3 bits (1941), Expect = 1.0e-213
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180
           EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD
Sbjct: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240
           GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240

Query: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300
           RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE
Sbjct: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360
           ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360

Query: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR 396
           HRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR
Sbjct: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR 395

[Close]

BLAST of Cmc08g0236101.1 vs. ExPASy TrEMBL
Match: A0A1S3BLJ3 (zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491164 PE=4 SV=1)

HSP 1 Score: 752.3 bits (1941), Expect = 1.0e-213
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180
           EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD
Sbjct: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240
           GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240

Query: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300
           RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE
Sbjct: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360
           ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360

Query: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR 396
           HRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR
Sbjct: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR 395

[Close]

BLAST of Cmc08g0236101.1 vs. ExPASy TrEMBL
Match: A0A1S3BLK5 (zinc finger CCCH domain-containing protein 25-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491164 PE=4 SV=1)

HSP 1 Score: 740.7 bits (1911), Expect = 3.1e-210
Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180
           EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD
Sbjct: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240
           GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240

Query: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300
           RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE
Sbjct: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360
           ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360

Query: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERN 391
           HRRENPDEKRDYWSSQGGRDSSSHSHRERN
Sbjct: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERN 390

[Close]

BLAST of Cmc08g0236101.1 vs. ExPASy TrEMBL
Match: A0A5D3BDJ8 (Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00830 PE=4 SV=1)

HSP 1 Score: 721.5 bits (1861), Expect = 2.0e-204
Identity = 395/464 (85.13%), Postives = 395/464 (85.13%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ-- 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQGN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  HMRRVGMFEDTSLGPRFISQVENSAPIDVIKNSILSLKKYANHGTQNLCFLAGASLGVGK 120

Query: 121 -------YGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH 180
                  YGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH
Sbjct: 121 ASWQLAGYGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH 180

Query: 181 ASKYKKKEEEDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDAS 240
           ASKYKKKEEEDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDAS
Sbjct: 181 ASKYKKKEEEDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDAS 240

Query: 241 SKWGHDKFDGRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSR 300
           SKWGHDKFDGRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSR
Sbjct: 241 SKWGHDKFDGRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSR 300

Query: 301 EDHGEKDEKRSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMK 360
           EDHGEKDEKRSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMK
Sbjct: 301 EDHGEKDEKRSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMK 360

Query: 361 SEDDRYRKEENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERD 396
           SEDDRYRKEENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERD
Sbjct: 361 SEDDRYRKEENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERD 420

[Close]

BLAST of Cmc08g0236101.1 vs. ExPASy TrEMBL
Match: A0A0A0KZW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308540 PE=4 SV=1)

HSP 1 Score: 687.6 bits (1773), Expect = 3.1e-194
Identity = 369/395 (93.42%), Postives = 375/395 (94.94%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH SKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180
           EDEEE+QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWG AEDASSKWGHDKFD
Sbjct: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDASSKWGHDKFD 180

Query: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240
            RKN +KEL AKGRK SDNLGRHPRETSGSLRQENR +G DDSKESELKSREDHG KDEK
Sbjct: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240

Query: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300
           RSRRYDLDGN DPKSGDD YK EEKRS RNHDDNRKDEKRSRKHD+DDEMK EDDRYRKE
Sbjct: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360
           ENRYRRNQDNELPQHSRRDY TREEDRSSKRHGD EYPPKLREDDKRRERD+SVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES 360

Query: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR 396
           +RRENPDEKRDY SS GGRDSSSHSHRERNED  R
Sbjct: 361 YRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR 395

[Close]

BLAST of Cmc08g0236101.1 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 271.6 bits (693), Expect = 1.0e-72
Identity = 190/356 (53.37%), Postives = 235/356 (66.01%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK +QKIN++E+ LGIS+EASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+QYG
Sbjct: 1   MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120
           EIVDVNLIRDKGTGKSKG+AF+AYEDQRST LAVDNLNGA +LGR ++VDH   YKK EE
Sbjct: 61  EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120

Query: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDK-F 180
           EDEE +++ REARGVCRAFQRGECTRG  CKFSHDE+RAA+TGWG  ED SSKW HDK  
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNR 180

Query: 181 DGRKNDNKELRAKGRKNSDNLGRHPRE---TSGSLRQENRLKGCDDSKESELK------- 240
           +GR       R +  +       H  +   T+G   +E+R    D  K +  K       
Sbjct: 181 EGRGVCRAFQRGECTRGDSCKFSHDEKRAATTGWGHEEDRSSKWDQDKLNGAKKGGTSFG 240

Query: 241 SREDHGEKDEKRSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDD---------NRKDEKR 300
           +R D     E++S R    G  D   GD  Y R ++R R + +D         + K++KR
Sbjct: 241 NRGDFKPDVEEKSYR----GRGD---GDASYGRPKERERVDREDMGPRSRDAYDMKEQKR 300

Query: 301 SRKHDDDDEMKSEDDRYRKEENRYRRNQDNELPQ-HSRRDYNTREE-DRSSKRHGD 335
           S ++D+    +  D+     E++  R QD E  +  SRRD N REE DR S R  D
Sbjct: 301 SGRYDNAYSRRHNDEIDYVREDKGSRAQDWEKRKAESRRDRNDREEKDRDSLRRED 349

The following BLAST results are available for this feature:

BLAST of Cmc08g0236101.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449221.1	2.1e-213	100.00	PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumi...	[more]
XP_008449231.1	6.4e-210	100.00	PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X2 [Cucumi...	[more]
TYJ96288.1	4.0e-204	85.13	zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var....	[more]
XP_004147921.1	6.5e-194	93.42	zinc finger CCCH domain-containing protein 25 [Cucumis sativus] >KGN54364.1 hypo...	[more]
TYK15418.1	1.2e-187	90.93	zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var....	[more]

BLAST of Cmc08g0236101.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10B98	2.5e-76	55.17	Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SD61	1.4e-71	53.37	Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8R0F5	1.6e-33	34.34	RNA-binding motif protein, X-linked 2 OS=Mus musculus OX=10090 GN=Rbmx2 PE=1 SV=...	[more]
B0BN49	5.9e-33	34.75	RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus OX=10116 GN=Rbmx2 PE=...	[more]
Q9Y388	3.0e-32	34.85	RNA-binding motif protein, X-linked 2 OS=Homo sapiens OX=9606 GN=RBMX2 PE=1 SV=2	[more]

BLAST of Cmc08g0236101.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUW9	1.0e-213	100.00	Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo va...	[more]
A0A1S3BLJ3	1.0e-213	100.00	zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo OX...	[more]
A0A1S3BLK5	3.1e-210	100.00	zinc finger CCCH domain-containing protein 25-like isoform X2 OS=Cucumis melo OX...	[more]
A0A5D3BDJ8	2.0e-204	85.13	Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo va...	[more]
A0A0A0KZW7	3.1e-194	93.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308540 PE=4 SV=1	[more]

BLAST of Cmc08g0236101.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47120.1	1.0e-72	53.37	RNA recognition motif (RRM)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 37..110 e-value: 3.3E-26 score: 103.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 38..106 e-value: 3.4E-21 score: 74.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 36..114 score: 20.303486
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 132..156 e-value: 0.001 score: 28.3
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 135..155 e-value: 7.8E-5 score: 22.5
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 130..157 score: 14.802481
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 26..132 e-value: 9.3E-32 score: 111.7
None	No IPR available	GENE3D	3.30.1370.210		coord: 133..227 e-value: 5.8E-6 score: 28.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..395
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..395
None	No IPR available	PANTHER	PTHR45880	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..310
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..310
None	No IPR available	CDD	cd12411	RRM_ist3_like	coord: 27..113 e-value: 2.18942E-56 score: 177.831
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 27..116
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 133..155

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc08g0236101	Cmc08g0236101	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0236101.1-exon	Cmc08g0236101.1-exon-CMiso1.1chr08:32433635..32433976	exon
Cmc08g0236101.1-exon	Cmc08g0236101.1-exon-CMiso1.1chr08:32435021..32435236	exon
Cmc08g0236101.1-exon	Cmc08g0236101.1-exon-CMiso1.1chr08:32436262..32436371	exon
Cmc08g0236101.1-exon	Cmc08g0236101.1-exon-CMiso1.1chr08:32436462..32436649	exon
Cmc08g0236101.1-exon	Cmc08g0236101.1-exon-CMiso1.1chr08:32436947..32438126	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0236101.1-five_prime_utr	Cmc08g0236101.1-five_prime_utr-CMiso1.1chr08:32433635..32433976	five_prime_UTR
Cmc08g0236101.1-five_prime_utr	Cmc08g0236101.1-five_prime_utr-CMiso1.1chr08:32435021..32435063	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0236101.1-cds	Cmc08g0236101.1-cds-CMiso1.1chr08:32435064..32435236	CDS
Cmc08g0236101.1-cds	Cmc08g0236101.1-cds-CMiso1.1chr08:32436262..32436371	CDS
Cmc08g0236101.1-cds	Cmc08g0236101.1-cds-CMiso1.1chr08:32436462..32436649	CDS
Cmc08g0236101.1-cds	Cmc08g0236101.1-cds-CMiso1.1chr08:32436947..32437663	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0236101.1-three_prime_utr	Cmc08g0236101.1-three_prime_utr-CMiso1.1chr08:32437664..32438126	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc08g0236101.1	Cmc08g0236101.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005686	U2 snRNP
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding