Cmc08g0232691.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc08g0232691.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 29678864 .. 29679889 (+)
Sequence length	1026
RNA-Seq Expression	Cmc08g0232691.1
Synteny	Cmc08g0232691.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCTAGCAGAGTTGAAAGAGTTGAAAGTGCAGTTGCAGGAGTTGCTTGACAAAGGCTTCATTCGACTGAATGCGTCACCTTGGGGTGCACCAGTCTTTTTTGTTAAAAAGAAGGATGGGTCGATGCGCCTGTGTATTGACTATAGGGAGTTGAATAAGGTAACTGTTAAGAACAAGTATCCTTTTCCCAGGATTGATGATCTATTTGACCAGTTGCAGGGAGCTACAGTGTTCTCTAAGATCGAACTTCGATCAAGATATCATCAGTTGAGGATCAAGGATAGTTATATACCGAAGATAGCCTTTCATTCGAGATGTGGGCATTATGAGTTCATTGTGATGTCCTTCGGATTGAAGAATGCTTTAGCAGTGTTTATGAATTTGATGAACAGAGTGTTTAAAGATTTCTTAGACACTTTCGTGATTGTATTCATTGATGATATCTTGGTGTTTTCCAGAATAGAGGCAGAGCATGAGGAGCATTTACGCATGGTTCTAGAGACCCTTCGAGCCAATAAACTATATGAAAAGTTTTCAATATGTGAGTTTTGGTTGAAGCAGGTATCTTTTCTGGGTCATGTGGTTTCTAAAGATGGTGTTTCTATTGATCCAACTAAGATAGAAGTTGTTACCAGTTGGCCCCGACCTTCCACAGTTAATGAAGTTTGTAGCTTTCTGGGTTTAGCGGGCTATTACCAACGGTTTGTGGAGGATTTTTCTCGTATAGCTACTCCTCTCACTCAGTTGACCAGGAAAAGAGCTCCATTTGTTTGGATCAAAGCATGTGAGGATAGTTTTCATAACCTTAAACAGAGGCTCGTTACTGCATCAATTCATACCGTAGCTGATGGTTCAGGGAGTTTTGTGATCTACAGTGATGCTTCTAAGAAAGGTTTGGGTTGTGTTCTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCTTCAGTTGAAGAGTCATGAGCAGAATTACCCTACCCATGATTTAGAGTTGGTAGCAATAGTTTTTACAGTGAAGATATAG

mRNA sequence

ATGGCCCTAGCAGAGTTGAAAGAGTTGAAAGTGCAGTTGCAGGAGTTGCTTGACAAAGGCTTCATTCGACTGAATGCGTCACCTTGGGGTGCACCAGTCTTTTTTGTTAAAAAGAAGGATGGGTCGATGCGCCTGTGTATTGACTATAGGGAGTTGAATAAGGTAACTGTTAAGAACAAGTATCCTTTTCCCAGGATTGATGATCTATTTGACCAGTTGCAGGGAGCTACAGTGTTCTCTAAGATCGAACTTCGATCAAGATATCATCAGTTGAGGATCAAGGATAGTTATATACCGAAGATAGCCTTTCATTCGAGATGTGGGCATTATGAGTTCATTGTGATGTCCTTCGGATTGAAGAATGCTTTAGCAGTGTTTATGAATTTGATGAACAGAGTGTTTAAAGATTTCTTAGACACTTTCGTGATTGTATTCATTGATGATATCTTGGTGTTTTCCAGAATAGAGGCAGAGCATGAGGAGCATTTACGCATGGTTCTAGAGACCCTTCGAGCCAATAAACTATATGAAAAGTTTTCAATATGTGAGTTTTGGTTGAAGCAGGTATCTTTTCTGGGTCATGTGGTTTCTAAAGATGGTGTTTCTATTGATCCAACTAAGATAGAAGTTGTTACCAGTTGGCCCCGACCTTCCACAGTTAATGAAGTTTGTAGCTTTCTGGGTTTAGCGGGCTATTACCAACGGTTTGTGGAGGATTTTTCTCGTATAGCTACTCCTCTCACTCAGTTGACCAGGAAAAGAGCTCCATTTGTTTGGATCAAAGCATGTGAGGATAGTTTTCATAACCTTAAACAGAGGCTCGTTACTGCATCAATTCATACCGTAGCTGATGGTTCAGGGAGTTTTGTGATCTACAGTGATGCTTCTAAGAAAGGTTTGGGTTGTGTTCTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCTTCAGTTGAAGAGTCATGAGCAGAATTACCCTACCCATGATTTAGAGTTGGTAGCAATAGTTTTTACAGTGAAGATATAG

Coding sequence (CDS)

ATGGCCCTAGCAGAGTTGAAAGAGTTGAAAGTGCAGTTGCAGGAGTTGCTTGACAAAGGCTTCATTCGACTGAATGCGTCACCTTGGGGTGCACCAGTCTTTTTTGTTAAAAAGAAGGATGGGTCGATGCGCCTGTGTATTGACTATAGGGAGTTGAATAAGGTAACTGTTAAGAACAAGTATCCTTTTCCCAGGATTGATGATCTATTTGACCAGTTGCAGGGAGCTACAGTGTTCTCTAAGATCGAACTTCGATCAAGATATCATCAGTTGAGGATCAAGGATAGTTATATACCGAAGATAGCCTTTCATTCGAGATGTGGGCATTATGAGTTCATTGTGATGTCCTTCGGATTGAAGAATGCTTTAGCAGTGTTTATGAATTTGATGAACAGAGTGTTTAAAGATTTCTTAGACACTTTCGTGATTGTATTCATTGATGATATCTTGGTGTTTTCCAGAATAGAGGCAGAGCATGAGGAGCATTTACGCATGGTTCTAGAGACCCTTCGAGCCAATAAACTATATGAAAAGTTTTCAATATGTGAGTTTTGGTTGAAGCAGGTATCTTTTCTGGGTCATGTGGTTTCTAAAGATGGTGTTTCTATTGATCCAACTAAGATAGAAGTTGTTACCAGTTGGCCCCGACCTTCCACAGTTAATGAAGTTTGTAGCTTTCTGGGTTTAGCGGGCTATTACCAACGGTTTGTGGAGGATTTTTCTCGTATAGCTACTCCTCTCACTCAGTTGACCAGGAAAAGAGCTCCATTTGTTTGGATCAAAGCATGTGAGGATAGTTTTCATAACCTTAAACAGAGGCTCGTTACTGCATCAATTCATACCGTAGCTGATGGTTCAGGGAGTTTTGTGATCTACAGTGATGCTTCTAAGAAAGGTTTGGGTTGTGTTCTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCTTCAGTTGAAGAGTCATGAGCAGAATTACCCTACCCATGATTTAGAGTTGGTAGCAATAGTTTTTACAGTGAAGATATAG

Protein sequence

MALAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNKYPFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLKNALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFSICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDFSRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGLGCVLMQQGKVVAYASLQLKSHEQNYPTHDLELVAIVFTVKI

Homology

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BLAST of Cmc08g0232691.1 vs. NCBI nr
Match: TYK04304.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 661.4 bits (1705), Expect = 4.3e-186
Identity = 328/332 (98.80%), Postives = 328/332 (98.80%), Query Frame = 0


Query: 1   MALAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK 60
           M LAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK
Sbjct: 366 MVLAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK 425

Query: 61  YPFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLK 120
           YP PRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSR GHYEFIVMSFGLK
Sbjct: 426 YPLPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRYGHYEFIVMSFGLK 485

Query: 121 NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFS 180
           NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSR EAEHEEHLRMVLETLRANKLYEKFS
Sbjct: 486 NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRTEAEHEEHLRMVLETLRANKLYEKFS 545

Query: 181 ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF 240
           ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF
Sbjct: 546 ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF 605

Query: 241 SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 300
           SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL
Sbjct: 606 SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 665

Query: 301 GCVLMQQGKVVAYASLQLKSHEQNYPTHDLEL 333
           GCVLMQQGKVVAYASLQLKSHEQNYPTHDLEL
Sbjct: 666 GCVLMQQGKVVAYASLQLKSHEQNYPTHDLEL 697

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BLAST of Cmc08g0232691.1 vs. NCBI nr
Match: KAA0062719.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 586.3 bits (1510), Expect = 1.7e-163
Identity = 291/341 (85.34%), Postives = 311/341 (91.20%), Query Frame = 0


Query: 1   MALAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MA AELKELKVQLQELLDKGFIR + SPWGAPV FVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 127 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 186

Query: 61  YPFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLK 120
           YP PRIDDLFDQLQGATVFSKI+LRS YHQLRIKD  +PK AF SR GHYEFIVMSFGL 
Sbjct: 187 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 246

Query: 121 NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFS 180
           NALAVFM+LMNRVF++FLDTFVIVFIDDIL++S+ EAEHEEHLRMVL+TLR NKLY KFS
Sbjct: 247 NALAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 306

Query: 181 ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF 240
            CEFWLKQVSFLGHVVSK GVS+DP KIE VTSW RPSTV+EV SFLGLAGYY+RFVE+F
Sbjct: 307 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYRRFVENF 366

Query: 241 SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 300
           SRIATPLTQLTRK APFVW KACEDSF NLKQ+LVTA + TV DGSGSFVIYSDASKKGL
Sbjct: 367 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 426

Query: 301 GCVLMQQGKVVAYASLQLKSHEQNYPTHDLELVAIVFTVKI 342
           GCVL+QQGKVVAYAS QLKSHEQNYPTHDLEL A+VF +KI
Sbjct: 427 GCVLIQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKI 467

[Close]

BLAST of Cmc08g0232691.1 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 583.6 bits (1503), Expect = 1.1e-162
Identity = 290/341 (85.04%), Postives = 309/341 (90.62%), Query Frame = 0


Query: 1   MALAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MA AELKELKVQLQELLDKGFIR + SPWGAPV FVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 580 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 639

Query: 61  YPFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLK 120
           YP PRIDDLFDQLQGATVFSKI+LRS YHQLRIKD  +PK AF SR GHYEFIVMSFGL 
Sbjct: 640 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 699

Query: 121 NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFS 180
           NA AVFM+LMNRVF++FLDTFVIVFIDDIL++S+ EAEHEEHLRMVL+TLR NKLY KFS
Sbjct: 700 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 759

Query: 181 ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF 240
            CEFWLKQVSFLGHVVSK GVS+DP KIE VT W RPSTV+EV SFLGLAGYY+RFVE+F
Sbjct: 760 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 819

Query: 241 SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 300
           SRIATPLTQLTRK APFVW KACEDSF NLKQ+LVTA + TV DGSGSFVIYSDASKKGL
Sbjct: 820 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 879

Query: 301 GCVLMQQGKVVAYASLQLKSHEQNYPTHDLELVAIVFTVKI 342
           GCVLMQQGKVVAYAS QLKSHEQNYPTHDLEL A+VF +KI
Sbjct: 880 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKI 920

[Close]

BLAST of Cmc08g0232691.1 vs. NCBI nr
Match: KAA0048696.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 582.4 bits (1500), Expect = 2.5e-162
Identity = 287/341 (84.16%), Postives = 312/341 (91.50%), Query Frame = 0


Query: 1   MALAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MA  ELKELKVQLQELLDKGFI+ + SPWGAPV FVKKKDGSMRLCIDY+ELNKVTVKNK
Sbjct: 401 MAPVELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGSMRLCIDYKELNKVTVKNK 460

Query: 61  YPFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLK 120
           YP PRIDDLFDQLQGATVFSKI+LRS Y+QLRIKDS +PK AF SR G+YEFIVMSFGL 
Sbjct: 461 YPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRIKDSDVPKTAFRSRYGYYEFIVMSFGLT 520

Query: 121 NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFS 180
           N LAVFM+LMNRVF++FLDTFVIVFIDDIL++S+ EAEHE+HLRMVL+TLRANKLY KFS
Sbjct: 521 NTLAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEKHLRMVLQTLRANKLYAKFS 580

Query: 181 ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF 240
            CEFWLKQVSF+GHVVSK GVS+DPTKIE VTSWPRPSTV+EV SFLGLAGYY+RFVE+F
Sbjct: 581 KCEFWLKQVSFIGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENF 640

Query: 241 SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 300
           SRIATPLTQLTRK  PFVW KACEDSF NLKQ+LVTA + TV DGSGSFVIYSDASKKGL
Sbjct: 641 SRIATPLTQLTRKGTPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 700

Query: 301 GCVLMQQGKVVAYASLQLKSHEQNYPTHDLELVAIVFTVKI 342
           GCVLMQQGKVVAYAS QLKSHEQNYPTHDLEL A+VF +K+
Sbjct: 701 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKM 741

[Close]

BLAST of Cmc08g0232691.1 vs. NCBI nr
Match: KAA0046094.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 582.0 bits (1499), Expect = 3.3e-162
Identity = 290/341 (85.04%), Postives = 308/341 (90.32%), Query Frame = 0


Query: 1    MALAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK 60
            MA AELKELKVQLQELLDKGFIR + SPWGAPV FVKKKDGSMRLCIDYRELNK TVKN+
Sbjct: 2285 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKETVKNR 2344

Query: 61   YPFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLK 120
            YP PRIDDLFDQLQGATVFSKI+LRS YHQLRIKD  +PK AF SR GHYEFIVMSFGL 
Sbjct: 2345 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFLSRYGHYEFIVMSFGLT 2404

Query: 121  NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFS 180
            NA AVFMNLMNRVF++FLDTFVIVFIDDIL++S+ EAEHEEHLRMVL+TLR NKLY KFS
Sbjct: 2405 NAPAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 2464

Query: 181  ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF 240
             CEFWLKQVSFLGHVVSK GVS+DP KIE VT W RPSTV+EV SFLGLAGYY+RFVE+F
Sbjct: 2465 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 2524

Query: 241  SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRK APFVW KACEDSF NLKQ+LVTA + TV DGSGSFVIYSDASKKGL
Sbjct: 2525 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 2584

Query: 301  GCVLMQQGKVVAYASLQLKSHEQNYPTHDLELVAIVFTVKI 342
            GCVLMQQGKVVAYAS QLKSHEQNYPTHDLEL A+VF +KI
Sbjct: 2585 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKI 2625

[Close]

BLAST of Cmc08g0232691.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.1e-63
Identity = 125/346 (36.13%), Postives = 204/346 (58.96%), Query Frame = 0


Query: 3   LAELKELKV--QLQELLDKGFIRLNASPWGAPVFFVKKKD-----GSMRLCIDYRELNKV 62
           LA+  E++V  Q+QE+L++G IR + SP+ +P + V KK         R+ IDYR+LN++
Sbjct: 214 LAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEI 273

Query: 63  TVKNKYPFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVM 122
           T+ ++YP P +D++  +L     F+ I+L   +HQ+ + +  I K AF ++ GHYE++ M
Sbjct: 274 TIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRM 333

Query: 123 SFGLKNALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKL 182
            FGL+NA A F   MN + +  L+   +V++DDI++FS    EH   +++V   L    L
Sbjct: 334 PFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANL 393

Query: 183 YEKFSICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQR 242
             +   CEF  K+ +FLGH+V+ DG+  +P K++ + S+P P+   E+ +FLGL GYY++
Sbjct: 394 KLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRK 453

Query: 243 FVEDFSRIATPLTQLTRKRAPFVWIK-ACEDSFHNLKQRLVTASIHTVADGSGSFVIYSD 302
           F+ +++ IA P+T   +KR      K    ++F  LK  ++   I  + D    FV+ +D
Sbjct: 454 FIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTD 513

Query: 303 ASKKGLGCVLMQQGKVVAYASLQLKSHEQNYPTHDLELVAIVFTVK 341
           AS   LG VL Q G  +++ S  L  HE NY   + EL+AIV+  K
Sbjct: 514 ASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATK 559

[Close]

BLAST of Cmc08g0232691.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.1e-63
Identity = 129/340 (37.94%), Postives = 203/340 (59.71%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRLNASPWGAPVFFV-KKKDGS----MRLCIDYRELNKVTVKNKY 66
           +E++ Q+Q++L++G IR + SP+ +P++ V KK+D S     R+ IDYR+LN++TV +++
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLKN 126
           P P +D++  +L     F+ I+L   +HQ+ +    + K AF ++ GHYE++ M FGLKN
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 ALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFSI 186
           A A F   MN + +  L+   +V++DDI+VFS    EH + L +V E L    L  +   
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 CEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDFS 246
           CEF  ++ +FLGHV++ DG+  +P KIE +  +P P+   E+ +FLGL GYY++F+ +F+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 247 RIATPLTQLTRKRAPFVWIKACEDS-FHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 306
            IA P+T+  +K           DS F  LK  +    I  V D +  F + +DAS   L
Sbjct: 461 DIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVAL 520

Query: 307 GCVLMQQGKVVAYASLQLKSHEQNYPTHDLELVAIVFTVK 341
           G VL Q G  ++Y S  L  HE NY T + EL+AIV+  K
Sbjct: 521 GAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATK 560

[Close]

BLAST of Cmc08g0232691.1 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 6.0e-58
Identity = 121/352 (34.38%), Postives = 201/352 (57.10%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRLNASPWGAPVFFVKKK-----DGSMRLCIDYRELNKVTVKNKYP 67
           E++ Q+ ELL  G IR + SP+ +P++ V KK     +   R+ +D++ LN VT+ + YP
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197

Query: 68  FPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLKNA 127
            P I+     L  A  F+ ++L S +HQ+ +K+S IPK AF +  G YEF+ + FGLKNA
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNA 257

Query: 128 LAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFSIC 187
            A+F  +++ + ++ +     V+IDDI+VFS     H ++LR+VL +L    L       
Sbjct: 258 PAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKS 317

Query: 188 EFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDFSR 247
            F   QV FLG++V+ DG+  DP K+  ++  P P++V E+  FLG+  YY++F++D+++
Sbjct: 318 HFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAK 377

Query: 248 IATPLTQLTR-----------KRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVI 307
           +A PLT LTR            + P    +    SF++LK  L ++ I      +  F +
Sbjct: 378 VAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHL 437

Query: 308 YSDASKKGLGCVLMQ----QGKVVAYASLQLKSHEQNYPTHDLELVAIVFTV 340
            +DAS   +G VL Q    + + +AY S  L   E+NY T + E++AI++++
Sbjct: 438 TTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSL 489

[Close]

BLAST of Cmc08g0232691.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 219.5 bits (558), Expect = 5.6e-56
Identity = 121/336 (36.01%), Postives = 187/336 (55.65%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNKYPFPRI 66
           +E+   +Q+LLD  FI  + SP  +PV  V KKDG+ RLC+DYR LNK T+ + +P PRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLKNALAVF 126
           D+L  ++  A +F+ ++L S YHQ+ ++     K AF +  G YE+ VM FGL NA + F
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 729

Query: 127 MNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFSICEFWL 186
              M   F+D    FV V++DDIL+FS    EH +HL  VLE L+   L  K   C+F  
Sbjct: 730 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 789

Query: 187 KQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDFSRIATP 246
           ++  FLG+ +    ++    K   +  +P P TV +   FLG+  YY+RF+ + S+IA P
Sbjct: 790 EETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP 849

Query: 247 LTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGLGCVLMQ 306
           +      ++   W +  + +   LK  L  + +    +   ++ + +DASK G+G VL +
Sbjct: 850 IQLFICDKSQ--WTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEE 909

Query: 307 QGK------VVAYASLQLKSHEQNYPTHDLELVAIV 337
                    VV Y S  L+S ++NYP  +LEL+ I+
Sbjct: 910 VDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGII 941

[Close]

BLAST of Cmc08g0232691.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 219.5 bits (558), Expect = 5.6e-56
Identity = 121/336 (36.01%), Postives = 187/336 (55.65%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNKYPFPRI 66
           +E+   +Q+LLD  FI  + SP  +PV  V KKDG+ RLC+DYR LNK T+ + +P PRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLKNALAVF 126
           D+L  ++  A +F+ ++L S YHQ+ ++     K AF +  G YE+ VM FGL NA + F
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 127 MNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFSICEFWL 186
              M   F+D    FV V++DDIL+FS    EH +HL  VLE L+   L  K   C+F  
Sbjct: 756 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 815

Query: 187 KQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDFSRIATP 246
           ++  FLG+ +    ++    K   +  +P P TV +   FLG+  YY+RF+ + S+IA P
Sbjct: 816 EETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP 875

Query: 247 LTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGLGCVLMQ 306
           +      ++   W +  + +   LK  L  + +    +   ++ + +DASK G+G VL +
Sbjct: 876 IQLFICDKSQ--WTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEE 935

Query: 307 QGK------VVAYASLQLKSHEQNYPTHDLELVAIV 337
                    VV Y S  L+S ++NYP  +LEL+ I+
Sbjct: 936 VDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGII 967

[Close]

BLAST of Cmc08g0232691.1 vs. ExPASy TrEMBL
Match: A0A5D3BZ98 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00330 PE=4 SV=1)

HSP 1 Score: 661.4 bits (1705), Expect = 2.1e-186
Identity = 328/332 (98.80%), Postives = 328/332 (98.80%), Query Frame = 0


Query: 1   MALAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK 60
           M LAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK
Sbjct: 366 MVLAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK 425

Query: 61  YPFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLK 120
           YP PRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSR GHYEFIVMSFGLK
Sbjct: 426 YPLPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRYGHYEFIVMSFGLK 485

Query: 121 NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFS 180
           NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSR EAEHEEHLRMVLETLRANKLYEKFS
Sbjct: 486 NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRTEAEHEEHLRMVLETLRANKLYEKFS 545

Query: 181 ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF 240
           ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF
Sbjct: 546 ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF 605

Query: 241 SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 300
           SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL
Sbjct: 606 SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 665

Query: 301 GCVLMQQGKVVAYASLQLKSHEQNYPTHDLEL 333
           GCVLMQQGKVVAYASLQLKSHEQNYPTHDLEL
Sbjct: 666 GCVLMQQGKVVAYASLQLKSHEQNYPTHDLEL 697

[Close]

BLAST of Cmc08g0232691.1 vs. ExPASy TrEMBL
Match: A0A5A7VAL8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold382G00460 PE=4 SV=1)

HSP 1 Score: 586.3 bits (1510), Expect = 8.5e-164
Identity = 291/341 (85.34%), Postives = 311/341 (91.20%), Query Frame = 0


Query: 1   MALAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MA AELKELKVQLQELLDKGFIR + SPWGAPV FVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 127 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 186

Query: 61  YPFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLK 120
           YP PRIDDLFDQLQGATVFSKI+LRS YHQLRIKD  +PK AF SR GHYEFIVMSFGL 
Sbjct: 187 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 246

Query: 121 NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFS 180
           NALAVFM+LMNRVF++FLDTFVIVFIDDIL++S+ EAEHEEHLRMVL+TLR NKLY KFS
Sbjct: 247 NALAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 306

Query: 181 ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF 240
            CEFWLKQVSFLGHVVSK GVS+DP KIE VTSW RPSTV+EV SFLGLAGYY+RFVE+F
Sbjct: 307 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYRRFVENF 366

Query: 241 SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 300
           SRIATPLTQLTRK APFVW KACEDSF NLKQ+LVTA + TV DGSGSFVIYSDASKKGL
Sbjct: 367 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 426

Query: 301 GCVLMQQGKVVAYASLQLKSHEQNYPTHDLELVAIVFTVKI 342
           GCVL+QQGKVVAYAS QLKSHEQNYPTHDLEL A+VF +KI
Sbjct: 427 GCVLIQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKI 467

[Close]

BLAST of Cmc08g0232691.1 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 583.6 bits (1503), Expect = 5.5e-163
Identity = 290/341 (85.04%), Postives = 309/341 (90.62%), Query Frame = 0


Query: 1   MALAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MA AELKELKVQLQELLDKGFIR + SPWGAPV FVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 580 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 639

Query: 61  YPFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLK 120
           YP PRIDDLFDQLQGATVFSKI+LRS YHQLRIKD  +PK AF SR GHYEFIVMSFGL 
Sbjct: 640 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 699

Query: 121 NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFS 180
           NA AVFM+LMNRVF++FLDTFVIVFIDDIL++S+ EAEHEEHLRMVL+TLR NKLY KFS
Sbjct: 700 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 759

Query: 181 ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF 240
            CEFWLKQVSFLGHVVSK GVS+DP KIE VT W RPSTV+EV SFLGLAGYY+RFVE+F
Sbjct: 760 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 819

Query: 241 SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 300
           SRIATPLTQLTRK APFVW KACEDSF NLKQ+LVTA + TV DGSGSFVIYSDASKKGL
Sbjct: 820 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 879

Query: 301 GCVLMQQGKVVAYASLQLKSHEQNYPTHDLELVAIVFTVKI 342
           GCVLMQQGKVVAYAS QLKSHEQNYPTHDLEL A+VF +KI
Sbjct: 880 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKI 920

[Close]

BLAST of Cmc08g0232691.1 vs. ExPASy TrEMBL
Match: A0A5A7U386 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00150 PE=4 SV=1)

HSP 1 Score: 582.4 bits (1500), Expect = 1.2e-162
Identity = 287/341 (84.16%), Postives = 312/341 (91.50%), Query Frame = 0


Query: 1   MALAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MA  ELKELKVQLQELLDKGFI+ + SPWGAPV FVKKKDGSMRLCIDY+ELNKVTVKNK
Sbjct: 401 MAPVELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGSMRLCIDYKELNKVTVKNK 460

Query: 61  YPFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLK 120
           YP PRIDDLFDQLQGATVFSKI+LRS Y+QLRIKDS +PK AF SR G+YEFIVMSFGL 
Sbjct: 461 YPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRIKDSDVPKTAFRSRYGYYEFIVMSFGLT 520

Query: 121 NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFS 180
           N LAVFM+LMNRVF++FLDTFVIVFIDDIL++S+ EAEHE+HLRMVL+TLRANKLY KFS
Sbjct: 521 NTLAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEKHLRMVLQTLRANKLYAKFS 580

Query: 181 ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF 240
            CEFWLKQVSF+GHVVSK GVS+DPTKIE VTSWPRPSTV+EV SFLGLAGYY+RFVE+F
Sbjct: 581 KCEFWLKQVSFIGHVVSKAGVSVDPTKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENF 640

Query: 241 SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 300
           SRIATPLTQLTRK  PFVW KACEDSF NLKQ+LVTA + TV DGSGSFVIYSDASKKGL
Sbjct: 641 SRIATPLTQLTRKGTPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 700

Query: 301 GCVLMQQGKVVAYASLQLKSHEQNYPTHDLELVAIVFTVKI 342
           GCVLMQQGKVVAYAS QLKSHEQNYPTHDLEL A+VF +K+
Sbjct: 701 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKM 741

[Close]

BLAST of Cmc08g0232691.1 vs. ExPASy TrEMBL
Match: A0A5A7TSQ8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00170 PE=4 SV=1)

HSP 1 Score: 582.0 bits (1499), Expect = 1.6e-162
Identity = 290/341 (85.04%), Postives = 308/341 (90.32%), Query Frame = 0


Query: 1    MALAELKELKVQLQELLDKGFIRLNASPWGAPVFFVKKKDGSMRLCIDYRELNKVTVKNK 60
            MA AELKELKVQLQELLDKGFIR + SPWGAPV FVKKKDGSMRLCIDYRELNK TVKN+
Sbjct: 2285 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKETVKNR 2344

Query: 61   YPFPRIDDLFDQLQGATVFSKIELRSRYHQLRIKDSYIPKIAFHSRCGHYEFIVMSFGLK 120
            YP PRIDDLFDQLQGATVFSKI+LRS YHQLRIKD  +PK AF SR GHYEFIVMSFGL 
Sbjct: 2345 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFLSRYGHYEFIVMSFGLT 2404

Query: 121  NALAVFMNLMNRVFKDFLDTFVIVFIDDILVFSRIEAEHEEHLRMVLETLRANKLYEKFS 180
            NA AVFMNLMNRVF++FLDTFVIVFIDDIL++S+ EAEHEEHLRMVL+TLR NKLY KFS
Sbjct: 2405 NAPAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 2464

Query: 181  ICEFWLKQVSFLGHVVSKDGVSIDPTKIEVVTSWPRPSTVNEVCSFLGLAGYYQRFVEDF 240
             CEFWLKQVSFLGHVVSK GVS+DP KIE VT W RPSTV+EV SFLGLAGYY+RFVE+F
Sbjct: 2465 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 2524

Query: 241  SRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASIHTVADGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRK APFVW KACEDSF NLKQ+LVTA + TV DGSGSFVIYSDASKKGL
Sbjct: 2525 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 2584

Query: 301  GCVLMQQGKVVAYASLQLKSHEQNYPTHDLELVAIVFTVKI 342
            GCVLMQQGKVVAYAS QLKSHEQNYPTHDLEL A+VF +KI
Sbjct: 2585 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKI 2625

[Close]

BLAST of Cmc08g0232691.1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 97.4 bits (241), Expect = 2.3e-20
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 162 HLRMVLETLRANKLYEKFSICEFWLKQVSFLG--HVVSKDGVSIDPTKIEVVTSWPRPST 221
           HL MVL+    ++ Y     C F   Q+++LG  H++S +GVS DP K+E +  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 222 VNEVCSFLGLAGYYQRFVEDFSRIATPLTQLTRKRAPFVWIKACEDSFHNLKQRLVTASI 281
             E+  FLGL GYY+RFV+++ +I  PLT+L +K +   W +    +F  LK  + T  +
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 282 HTVADGSGSFV 291
             + D    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc08g0232691.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04304.1	4.3e-186	98.80	pol protein [Cucumis melo var. makuwa]	[more]
KAA0062719.1	1.7e-163	85.34	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	1.1e-162	85.04	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048696.1	2.5e-162	84.16	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0046094.1	3.3e-162	85.04	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0232691.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.1e-63	36.13	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.1e-63	37.94	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	6.0e-58	34.38	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q99315	5.6e-56	36.01	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	5.6e-56	36.01	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc08g0232691.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZ98	2.1e-186	98.80	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00330 PE...	[more]
A0A5A7VAL8	8.5e-164	85.34	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold382G00460 PE...	[more]
A0A5A7U330	5.5e-163	85.04	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7U386	1.2e-162	84.16	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7TSQ8	1.6e-162	85.04	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]

BLAST of Cmc08g0232691.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.3e-20	36.64	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 259..340 e-value: 3.5E-21 score: 75.1
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..195 e-value: 1.2E-18 score: 67.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 3..121 e-value: 4.0E-75 score: 253.7
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 13..340
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 13..340
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..196 e-value: 3.77972E-82 score: 245.197
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..196 e-value: 4.0E-75 score: 253.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 206..291 e-value: 3.8E-26 score: 92.9
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..340

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc08g0232691	Cmc08g0232691	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0232691.1-exon	Cmc08g0232691.1-exon-CMiso1.1chr08:29678864..29679889	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0232691.1-cds	Cmc08g0232691.1-cds-CMiso1.1chr08:29678864..29679889	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc08g0232691.1	Cmc08g0232691.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding