Cmc07g0192441.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0192441.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	BTB/POZ domain-containing protein DOT3
Location	CMiso1.1chr07: 13137415 .. 13137838 (-)
Sequence length	325
RNA-Seq Expression	Cmc07g0192441.1
Synteny	Cmc07g0192441.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGACGTCTCTTACTGGAACGCCAAATCCAGAGAGCGATTCAGATGGAGCCAAGCAGGTTCATGACCAGAGGATCGTGATTCCAAACAAACTCATCACTGAAGCTGAGTGCATCAATAGGAAAGATCAAGCATGGTAGAACCTTGAGTTCATTTAAGAATCTTGCGGGGAATATTGGCCTTCTACTACCTGAAGACTTAGTTTAAATACAATCTCTGTTTCTTCCCTTTGCAGGTTTATCACCACTCAGATCCCAACAGATTTGAAAATTAAAGTACAAGAGATCACCTTCCATGTTCACAAGGTAACTACCTCTATGCAAATAAGTTCAAACTTTGGTTCCATAATACATTAAACATTAAATGCGGCAAAAGAGTTCTTGAGGTCAATCAACCAAAATGATCAAGATTGAACAAGCTAACAA

mRNA sequence

CATGACGTCTCTTACTGGAACGCCAAATCCAGAGAGCGATTCAGATGGAGCCAAGCAGGTTCATGACCAGAGGATCGTGATTCCAAACAAACTCATCACTGAAGCTGAGTGCATCAATAGGAAAGATCAAGCATGGTTTATCACCACTCAGATCCCAACAGATTTGAAAATTAAAGTACAAGAGATCACCTTCCATGTTCACAAGGTAACTACCTCTATGCAAATAAGTTCAAACTTTGGTTCCATAATACATTAAACATTAAATGCGGCAAAAGAGTTCTTGAGGTCAATCAACCAAAATGATCAAGATTGAACAAGCTAACAA

Coding sequence (CDS)

ATGACGTCTCTTACTGGAACGCCAAATCCAGAGAGCGATTCAGATGGAGCCAAGCAGGTTCATGACCAGAGGATCGTGATTCCAAACAAACTCATCACTGAAGCTGAGTGCATCAATAGGAAAGATCAAGCATGGTTTATCACCACTCAGATCCCAACAGATTTGAAAATTAAAGTACAAGAGATCACCTTCCATGTTCACAAGGTAACTACCTCTATGCAAATAAGTTCAAACTTTGGTTCCATAATACATTAA

Protein sequence

MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQEITFHVHKVTTSMQISSNFGSIIH

Homology

[Close]

BLAST of Cmc07g0192441.1 vs. NCBI nr
Match: KAA0053398.1 (BTB/POZ domain-containing protein DOT3 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 9.6e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 60
          MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ
Sbjct: 13 MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 72

Query: 61 EITFHVHKVT 71
          EITFHVHK T
Sbjct: 73 EITFHVHKYT 82

[Close]

BLAST of Cmc07g0192441.1 vs. NCBI nr
Match: XP_016901774.1 (PREDICTED: BTB/POZ domain-containing protein DOT3 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 4.8e-30
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 60
          M SLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ
Sbjct: 13 MKSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 72

Query: 61 EITFHVHKVT 71
          EITFHVHK T
Sbjct: 73 EITFHVHKYT 82

[Close]

BLAST of Cmc07g0192441.1 vs. NCBI nr
Match: TYK15877.1 (BTB/POZ domain-containing protein DOT3 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-29
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 60
          M SLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ
Sbjct: 13 MKSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 72

Query: 61 EITFHVHK 69
          EITFHVHK
Sbjct: 73 EITFHVHK 80

[Close]

BLAST of Cmc07g0192441.1 vs. NCBI nr
Match: XP_031740482.1 (BTB/POZ domain-containing protein DOT3 [Cucumis sativus] >KGN53647.1 hypothetical protein Csa_014504 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1  MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 60
          M SLT TPNPESDSDGA+QV DQRIV+PNKLIT+AEC+N KDQAWFITTQIPTDLKIKV+
Sbjct: 1  MKSLTATPNPESDSDGAEQVRDQRIVVPNKLITQAECVNTKDQAWFITTQIPTDLKIKVE 60

Query: 61 EITFHVHKVT 71
          E+TF+VHK T
Sbjct: 61 EVTFNVHKYT 70

[Close]

BLAST of Cmc07g0192441.1 vs. NCBI nr
Match: XP_022929524.1 (BTB/POZ domain-containing protein DOT3-like [Cucurbita moschata])

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22
Identity = 54/68 (79.41%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 3   SLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQEI 62
           SLTG PN ESDS+GA+QVHD+RIVIPNKLITEA+CIN KD+AWFITT+IPTDL+I+VQE+
Sbjct: 79  SLTGMPNTESDSEGAEQVHDKRIVIPNKLITEADCINIKDEAWFITTKIPTDLRIQVQEV 138

Query: 63  TFHVHKVT 71
           TF+VHK T
Sbjct: 139 TFNVHKYT 146

[Close]

BLAST of Cmc07g0192441.1 vs. ExPASy Swiss-Prot
Match: Q9LFU0 (BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana OX=3702 GN=DOT3 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.5e-07
Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 60
          M S++     +S  D A  V ++ I+ P++++T A    +KD++W++ +QIPTDL I+V 
Sbjct: 1  MNSVSAAERLKSFGD-AGPVCNKSIIFPSRVVTLANSFEKKDRSWYVKSQIPTDLSIQVN 60

Query: 61 EITFHVHK 69
          +ITF  HK
Sbjct: 61 DITFKAHK 67

[Close]

BLAST of Cmc07g0192441.1 vs. ExPASy Swiss-Prot
Match: Q9S9Q9 (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 6.1e-04
Identity = 17/39 (43.59%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 30 KLITEAECINRKDQAWFITTQIPTDLKIKVQEITFHVHK 69
          KL ++++   R+ QAWF TT +P+D+ ++V E++FH+HK
Sbjct: 5  KLGSKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHK 43

[Close]

BLAST of Cmc07g0192441.1 vs. ExPASy TrEMBL
Match: A0A5A7UEB1 (BTB/POZ domain-containing protein DOT3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00640 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.7e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 60
          MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ
Sbjct: 13 MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 72

Query: 61 EITFHVHKVT 71
          EITFHVHK T
Sbjct: 73 EITFHVHKYT 82

[Close]

BLAST of Cmc07g0192441.1 vs. ExPASy TrEMBL
Match: A0A1S4E0M8 (BTB/POZ domain-containing protein DOT3 OS=Cucumis melo OX=3656 GN=LOC103495786 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.3e-30
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 60
          M SLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ
Sbjct: 13 MKSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 72

Query: 61 EITFHVHKVT 71
          EITFHVHK T
Sbjct: 73 EITFHVHKYT 82

[Close]

BLAST of Cmc07g0192441.1 vs. ExPASy TrEMBL
Match: A0A5D3CVC9 (BTB/POZ domain-containing protein DOT3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00550 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.7e-30
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 60
          M SLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ
Sbjct: 13 MKSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 72

Query: 61 EITFHVHK 69
          EITFHVHK
Sbjct: 73 EITFHVHK 80

[Close]

BLAST of Cmc07g0192441.1 vs. ExPASy TrEMBL
Match: A0A0A0KZ42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095570 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1  MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 60
          M SLT TPNPESDSDGA+QV DQRIV+PNKLIT+AEC+N KDQAWFITTQIPTDLKIKV+
Sbjct: 1  MKSLTATPNPESDSDGAEQVRDQRIVVPNKLITQAECVNTKDQAWFITTQIPTDLKIKVE 60

Query: 61 EITFHVHKVT 71
          E+TF+VHK T
Sbjct: 61 EVTFNVHKYT 70

[Close]

BLAST of Cmc07g0192441.1 vs. ExPASy TrEMBL
Match: A0A6J1ENZ9 (BTB/POZ domain-containing protein DOT3-like OS=Cucurbita moschata OX=3662 GN=LOC111436065 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.1e-23
Identity = 54/68 (79.41%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 3   SLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQEI 62
           SLTG PN ESDS+GA+QVHD+RIVIPNKLITEA+CIN KD+AWFITT+IPTDL+I+VQE+
Sbjct: 79  SLTGMPNTESDSEGAEQVHDKRIVIPNKLITEADCINIKDEAWFITTKIPTDLRIQVQEV 138

Query: 63  TFHVHKVT 71
           TF+VHK T
Sbjct: 139 TFNVHKYT 146

[Close]

BLAST of Cmc07g0192441.1 vs. TAIR 10
Match: AT5G10250.1 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-08
Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  MTSLTGTPNPESDSDGAKQVHDQRIVIPNKLITEAECINRKDQAWFITTQIPTDLKIKVQ 60
          M S++     +S  D A  V ++ I+ P++++T A    +KD++W++ +QIPTDL I+V 
Sbjct: 1  MNSVSAAERLKSFGD-AGPVCNKSIIFPSRVVTLANSFEKKDRSWYVKSQIPTDLSIQVN 60

Query: 61 EITFHVHK 69
          +ITF  HK
Sbjct: 61 DITFKAHK 67

[Close]

BLAST of Cmc07g0192441.1 vs. TAIR 10
Match: AT1G30440.1 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.3e-05
Identity = 17/39 (43.59%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 30 KLITEAECINRKDQAWFITTQIPTDLKIKVQEITFHVHK 69
          KL ++++   R+ QAWF TT +P+D+ ++V E++FH+HK
Sbjct: 5  KLGSKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHK 43

[Close]

BLAST of Cmc07g0192441.1 vs. TAIR 10
Match: AT5G66560.1 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.7e-04
Identity = 16/28 (57.14%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 41 KDQAWFITTQIPTDLKIKVQEITFHVHK 69
          K QAWF TT +P+D++I+V ++TFH+HK
Sbjct: 9  KGQAWFCTTGLPSDIEIEVDDMTFHLHK 36

[Close]

BLAST of Cmc07g0192441.1 vs. TAIR 10
Match: AT3G50840.1 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.8e-04
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 39 NRKDQAWFI-TTQIPTDLKIKVQEITFHVHK 69
          N K QAWF  TT +P+D++I+V +ITFH+HK
Sbjct: 3  NSKKQAWFFYTTGLPSDIEIEVDDITFHLHK 33

The following BLAST results are available for this feature:

BLAST of Cmc07g0192441.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053398.1	9.6e-31	98.57	BTB/POZ domain-containing protein DOT3 [Cucumis melo var. makuwa]	[more]
XP_016901774.1	4.8e-30	97.14	PREDICTED: BTB/POZ domain-containing protein DOT3 [Cucumis melo]	[more]
TYK15877.1	1.4e-29	98.53	BTB/POZ domain-containing protein DOT3 [Cucumis melo var. makuwa]	[more]
XP_031740482.1	2.1e-25	82.86	BTB/POZ domain-containing protein DOT3 [Cucumis sativus] >KGN53647.1 hypothetica...	[more]
XP_022929524.1	1.3e-22	79.41	BTB/POZ domain-containing protein DOT3-like [Cucurbita moschata]	[more]

BLAST of Cmc07g0192441.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFU0	4.5e-07	38.24	BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana OX=3702 GN=DOT3 P...	[more]
Q9S9Q9	6.1e-04	43.59	BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]

BLAST of Cmc07g0192441.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UEB1	4.7e-31	98.57	BTB/POZ domain-containing protein DOT3 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S4E0M8	2.3e-30	97.14	BTB/POZ domain-containing protein DOT3 OS=Cucumis melo OX=3656 GN=LOC103495786 P...	[more]
A0A5D3CVC9	6.7e-30	98.53	BTB/POZ domain-containing protein DOT3 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KZ42	1.0e-25	82.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095570 PE=3 SV=1	[more]
A0A6J1ENZ9	6.1e-23	79.41	BTB/POZ domain-containing protein DOT3-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Cmc07g0192441.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10250.1	3.2e-08	38.24	Phototropic-responsive NPH3 family protein	[more]
AT1G30440.1	4.3e-05	43.59	Phototropic-responsive NPH3 family protein	[more]
AT5G66560.1	1.7e-04	57.14	Phototropic-responsive NPH3 family protein	[more]
AT3G50840.1	2.8e-04	58.06	Phototropic-responsive NPH3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0192441	Cmc07g0192441	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192441.1-exon	Cmc07g0192441.1-exon-CMiso1.1chr07:13137415..13137604	exon
Cmc07g0192441.1-exon	Cmc07g0192441.1-exon-CMiso1.1chr07:13137704..13137838	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192441.1-three_prime_utr	Cmc07g0192441.1-three_prime_utr-CMiso1.1chr07:13137415..13137483	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192441.1-cds	Cmc07g0192441.1-cds-CMiso1.1chr07:13137484..13137604	CDS
Cmc07g0192441.1-cds	Cmc07g0192441.1-cds-CMiso1.1chr07:13137704..13137837	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192441.1-five_prime_utr	Cmc07g0192441.1-five_prime_utr-CMiso1.1chr07:13137838..13137838	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192441.1	Cmc07g0192441.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination