Cmc07g0192231.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0192231.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 12742306 .. 12743378 (+)
Sequence length	939
RNA-Seq Expression	Cmc07g0192231.1
Synteny	Cmc07g0192231.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTGCAAGAATTGCTGGATAAGGGATTCATTCGACCGAGCATGTCACCTTGGGGTGCGCCAATTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATTGATGATATCTTGATATACTCCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATAGTTTTGCAGACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGAAAGAGGCAGTCACCGATTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAAAACCTTAAACAGAAGCTAGTTACCGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGCTTTGATGCAACAAGGTAAGGTGGTCGCTTATTTTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGTAGTGGTTTTTGCTTTAAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATCTTCACGGATCATAA

mRNA sequence

ATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTGCAAGAATTGCTGGATAAGGGATTCATTCGACCGAGCATGTCACCTTGGGGTGCGCCAATTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATTGATGATATCTTGATATACTCCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATAGTTTTGCAGACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGAAAGAGGCAGTCACCGATTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAAAACCTTAAACAGAAGCTAGTTACCGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGCTTTGATGCAACAAGATCTTCACGGATCATAA

Coding sequence (CDS)

ATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTGCAAGAATTGCTGGATAAGGGATTCATTCGACCGAGCATGTCACCTTGGGGTGCGCCAATTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATTGATGATATCTTGATATACTCCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATAGTTTTGCAGACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGAAAGAGGCAGTCACCGATTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAAAACCTTAAACAGAAGCTAGTTACCGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGCTTTGATGCAACAAGATCTTCACGGATCATAA

Protein sequence

MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCALMQQDLHGS

Homology

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BLAST of Cmc07g0192231.1 vs. NCBI nr
Match: KAA0053357.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 623.2 bits (1606), Expect = 1.2e-174
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 942  MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 1001

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 1002 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 1061

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS
Sbjct: 1062 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 1121

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1122 KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 1181

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Sbjct: 1182 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 1241

Query: 301  GCALMQQ 308
            GCALMQQ
Sbjct: 1242 GCALMQQ 1248

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BLAST of Cmc07g0192231.1 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 614.0 bits (1582), Expect = 7.2e-172
Identity = 302/307 (98.37%), Postives = 304/307 (99.02%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPS+SPWGAP+LFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 1063 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 1122

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 1123 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 1182

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS
Sbjct: 1183 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 1242

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAK EAVT WTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1243 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1302

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Sbjct: 1303 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 1362

Query: 301  GCALMQQ 308
            GC LMQQ
Sbjct: 1363 GCVLMQQ 1369

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BLAST of Cmc07g0192231.1 vs. NCBI nr
Match: KAA0051051.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 612.5 bits (1578), Expect = 2.1e-171
Identity = 301/307 (98.05%), Postives = 304/307 (99.02%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPS+SPWGAP+LFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 707  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 766

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIK+GDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 767  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKEGDVPKTAFRSRYGHYEFIVMSFGLT 826

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS
Sbjct: 827  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 886

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAK EAVT WTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 887  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 946

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Sbjct: 947  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 1006

Query: 301  GCALMQQ 308
            GC LMQQ
Sbjct: 1007 GCVLMQQ 1013

[Close]

BLAST of Cmc07g0192231.1 vs. NCBI nr
Match: KAA0053368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 611.7 bits (1576), Expect = 3.6e-171
Identity = 300/307 (97.72%), Postives = 304/307 (99.02%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPS+SPWGAP+LFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 768  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 827

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 828  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 887

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 180
            NAPAVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS
Sbjct: 888  NAPAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 947

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAK EAVT WTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 948  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1007

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSDASKKGL
Sbjct: 1008 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGL 1067

Query: 301  GCALMQQ 308
            GC LMQQ
Sbjct: 1068 GCVLMQQ 1074

[Close]

BLAST of Cmc07g0192231.1 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 609.8 bits (1571), Expect = 1.4e-170
Identity = 300/307 (97.72%), Postives = 303/307 (98.70%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPS+SPWGAP+LFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 580 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 639

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 640 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 699

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 180
           NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFS
Sbjct: 700 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 759

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEFWLKQVSFLGHVVSKAGVSVDPAK EAVT WTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 760 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 819

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 300
           SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Sbjct: 820 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 879

Query: 301 GCALMQQ 308
           GC LMQQ
Sbjct: 880 GCVLMQQ 886

[Close]

BLAST of Cmc07g0192231.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 5.1e-64
Identity = 118/305 (38.69%), Postives = 186/305 (60.98%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRPSMSPWGAPILFVKKKD-----GSMRLCIDYRELNKVTVKNRYP 67
           E++ Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN++T+ +RYP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNA 127
           +P +D++  +L     F+ IDL  G+HQ+ + +  + KTAF ++ GHYE++ M FGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKC 187
           PA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  L  +  KC
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 EFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENFSR 247
           EF  K+ +FLGH+V+  G+  +P K +A+  +  P+   E+R+FLGL GYYR+F+ N++ 
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYAD 460

Query: 248 IATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLG 307
           IA P+T   +K       K    ++F+ LK  ++  P+L +PD    FV+ +DAS   LG
Sbjct: 461 IAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALG 520

[Close]

BLAST of Cmc07g0192231.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.6e-63
Identity = 123/310 (39.68%), Postives = 195/310 (62.90%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSMSPWGAPILFV-KKKDGS----MRLCIDYRELNKVTVKNRY 66
           +E++ Q+Q++L++G IR S SP+ +PI  V KK+D S     R+ IDYR+LN++TV +R+
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTN 126
           P+P +D++  +L     F+ IDL  G+HQ+ +    V KTAF +++GHYE++ M FGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 APAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSK 186
           APA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  K
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 CEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENFS 246
           CEF  ++ +FLGHV++  G+  +P K EA+  +  P+   E+++FLGL GYYR+F+ NF+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 247 RIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 306
            IA P+T+  +K      +    DS F+ LK  +   P+L VPD +  F + +DAS   L
Sbjct: 461 DIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVAL 520

Query: 307 GCALMQQDLH 311
           G A++ QD H
Sbjct: 521 G-AVLSQDGH 529

[Close]

BLAST of Cmc07g0192231.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 238.8 bits (608), Expect = 8.2e-62
Identity = 121/302 (40.07%), Postives = 184/302 (60.93%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +P++ V KKDG+ RLC+DYR LNK T+ + +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVF 126
           D+L  ++  A +F+ +DL SGYHQ+ ++  D  KTAF +  G YE+ VM FGL NAP+ F
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 127 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWL 186
              M   FR+    FV V++DDILI+S++  EH +HL  VL+ L++  L  K  KC+F  
Sbjct: 756 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 815

Query: 187 KQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 246
           ++  FLG+ +    ++    K  A+ D+  P TV + + FLG+  YYRRF+ N S+IA P
Sbjct: 816 EETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP 875

Query: 247 LTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCALMQ 306
           +       +   W++  + + + LK  L  +PVL   +   ++ + +DASK G+G  L +
Sbjct: 876 IQLFICDKSQ--WTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEE 933

Query: 307 QD 309
            D
Sbjct: 936 VD 933

[Close]

BLAST of Cmc07g0192231.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.1e-61
Identity = 113/307 (36.81%), Postives = 187/307 (60.91%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    P++FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 180
            APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEF   QV F+G+ +S+ G +      + V  W +P    E+R FLG   Y R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 300
           S++  PL  L +K   + W+     + +N+KQ LV+ PVL   D S   ++ +DAS   +
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719

Query: 301 GCALMQQ 308
           G  L Q+
Sbjct: 720 GAVLSQK 726

[Close]

BLAST of Cmc07g0192231.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.1e-61
Identity = 113/307 (36.81%), Postives = 187/307 (60.91%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    P++FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 180
            APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEF   QV F+G+ +S+ G +      + V  W +P    E+R FLG   Y R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 300
           S++  PL  L +K   + W+     + +N+KQ LV+ PVL   D S   ++ +DAS   +
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719

Query: 301 GCALMQQ 308
           G  L Q+
Sbjct: 720 GAVLSQK 726

[Close]

BLAST of Cmc07g0192231.1 vs. ExPASy TrEMBL
Match: A0A5A7UFS9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00110 PE=4 SV=1)

HSP 1 Score: 623.2 bits (1606), Expect = 5.7e-175
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 942  MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 1001

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 1002 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 1061

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS
Sbjct: 1062 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 1121

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1122 KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 1181

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Sbjct: 1182 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 1241

Query: 301  GCALMQQ 308
            GCALMQQ
Sbjct: 1242 GCALMQQ 1248

[Close]

BLAST of Cmc07g0192231.1 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 614.0 bits (1582), Expect = 3.5e-172
Identity = 302/307 (98.37%), Postives = 304/307 (99.02%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPS+SPWGAP+LFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 1063 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 1122

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 1123 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 1182

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS
Sbjct: 1183 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 1242

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAK EAVT WTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1243 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1302

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Sbjct: 1303 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 1362

Query: 301  GCALMQQ 308
            GC LMQQ
Sbjct: 1363 GCVLMQQ 1369

[Close]

BLAST of Cmc07g0192231.1 vs. ExPASy TrEMBL
Match: A0A5A7UC07 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00040 PE=4 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 1.0e-171
Identity = 301/307 (98.05%), Postives = 304/307 (99.02%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPS+SPWGAP+LFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 707  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 766

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIK+GDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 767  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKEGDVPKTAFRSRYGHYEFIVMSFGLT 826

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS
Sbjct: 827  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 886

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAK EAVT WTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 887  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 946

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL
Sbjct: 947  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 1006

Query: 301  GCALMQQ 308
            GC LMQQ
Sbjct: 1007 GCVLMQQ 1013

[Close]

BLAST of Cmc07g0192231.1 vs. ExPASy TrEMBL
Match: A0A5A7UE75 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00240 PE=4 SV=1)

HSP 1 Score: 611.7 bits (1576), Expect = 1.7e-171
Identity = 300/307 (97.72%), Postives = 304/307 (99.02%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPS+SPWGAP+LFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 768  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 827

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 828  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 887

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 180
            NAPAVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS
Sbjct: 888  NAPAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 947

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAK EAVT WTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 948  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1007

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSDASKKGL
Sbjct: 1008 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGL 1067

Query: 301  GCALMQQ 308
            GC LMQQ
Sbjct: 1068 GCVLMQQ 1074

[Close]

BLAST of Cmc07g0192231.1 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 609.8 bits (1571), Expect = 6.5e-171
Identity = 301/307 (98.05%), Postives = 302/307 (98.37%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSMSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSMSPWGAP+LFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 952  MAPAELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 1011

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 1012 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 1071

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS
Sbjct: 1072 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 1131

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKKEAVTDWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAK EAVT WTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1132 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1191

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 300
            SRIA PLTQLTRKGAPFVWSKACEDSFQNLKQKLVTA VLTVPDGSGSFVIYSDASKKGL
Sbjct: 1192 SRIAAPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTALVLTVPDGSGSFVIYSDASKKGL 1251

Query: 301  GCALMQQ 308
            GC LMQQ
Sbjct: 1252 GCVLMQQ 1258

[Close]

BLAST of Cmc07g0192231.1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-26
Identity = 58/131 (44.27%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 162 HLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKKEAVTDWTRPST 221
           HL +VLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK EA+  W  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 222 VSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV 281
            +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +   W++    +F+ LK  + T PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 282 LTVPDGSGSFV 291
           L +PD    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc07g0192231.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053357.1	1.2e-174	100.00	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047433.1	7.2e-172	98.37	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051051.1	2.1e-171	98.05	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0053368.1	3.6e-171	97.72	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	1.4e-170	97.72	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0192231.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	5.1e-64	38.69	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.6e-63	39.68	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q7LHG5	8.2e-62	40.07	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	1.1e-61	36.81	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.1e-61	36.81	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc07g0192231.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFS9	5.7e-175	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold42...	[more]
A0A5A7TV57	3.5e-172	98.37	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UC07	1.0e-171	98.05	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7UE75	1.7e-171	97.72	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold42...	[more]
A0A5A7SQU8	6.5e-171	98.05	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Cmc07g0192231.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.6e-26	44.27	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 206..296 e-value: 4.5E-31 score: 108.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..196 e-value: 2.3E-88 score: 297.0
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 259..309 e-value: 1.6E-13 score: 50.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 2.3E-88 score: 297.0
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..311
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..311
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..196 e-value: 1.47637E-100 score: 291.036
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..195 e-value: 1.5E-29 score: 103.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 17..196 score: 11.274
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..308

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0192231	Cmc07g0192231	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192231.1-exon	Cmc07g0192231.1-exon-CMiso1.1chr07:12742306..12743227	exon
Cmc07g0192231.1-exon	Cmc07g0192231.1-exon-CMiso1.1chr07:12743362..12743378	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192231.1-cds	Cmc07g0192231.1-cds-CMiso1.1chr07:12742306..12743227	CDS
Cmc07g0192231.1-cds	Cmc07g0192231.1-cds-CMiso1.1chr07:12743362..12743378	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192231.1	Cmc07g0192231.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding