Cmc07g0186681.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0186681.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribulose bisphosphate carboxylase large chain
Location	CMiso1.1chr07: 4631528 .. 4631764 (-)
Sequence length	237
RNA-Seq Expression	Cmc07g0186681.1
Synteny	Cmc07g0186681.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGATCGGATGATTTGTCACTTTCTAAATCTTATTCTTTCTCAACAATATCTCTGTCTTATGGAGCTTTATAATGAAACCAAAGATACTGATATCTTGGTAGCATTCCAAGTAACTCCTCAATCAGAAGTTCCACCGCTTCGTGGGGAAGCAGGGATCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGAGATTACCAGTCTTGATCGTTGA

mRNA sequence

ATGCAAGATCGGATGATTTGTCACTTTCTAAATCTTATTCTTTCTCAACAATATCTCTGTCTTATGGAGCTTTATAATGAAACCAAAGATACTGATATCTTGGTAGCATTCCAAGTAACTCCTCAATCAGAAGTTCCACCGCTTCGTGGGGAAGCAGGGATCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGAGATTACCAGTCTTGATCGTTGA

Coding sequence (CDS)

ATGCAAGATCGGATGATTTGTCACTTTCTAAATCTTATTCTTTCTCAACAATATCTCTGTCTTATGGAGCTTTATAATGAAACCAAAGATACTGATATCTTGGTAGCATTCCAAGTAACTCCTCAATCAGAAGTTCCACCGCTTCGTGGGGAAGCAGGGATCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGAGATTACCAGTCTTGATCGTTGA

Protein sequence

MQDRMICHFLNLILSQQYLCLMELYNETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR

Homology

[Close]

BLAST of Cmc07g0186681.1 vs. NCBI nr
Match: AIG54729.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Dillenia grandifolia])

HSP 1 Score: 84.0 bits (206), Expect = 6.4e-13
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ+E+PP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 3  ETKDTDILAAFRVTPQTEIPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 52

[Close]

BLAST of Cmc07g0186681.1 vs. NCBI nr
Match: AUR28390.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Goodyera oblongifolia])

HSP 1 Score: 84.0 bits (206), Expect = 6.4e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP  GEAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 21 ETKDTDILAAFRVTPQPGVPP--GEAGAAVAAESSTGTWTTVWTDGLTSLDR 70

[Close]

BLAST of Cmc07g0186681.1 vs. NCBI nr
Match: QCX35970.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Aerides rosea])

HSP 1 Score: 84.0 bits (206), Expect = 6.4e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP  GEAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 26 ETKDTDILAAFRVTPQPGVPP--GEAGAAVAAESSTGTWTTVWTDGLTSLDR 75

[Close]

BLAST of Cmc07g0186681.1 vs. NCBI nr
Match: QCX35971.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Aerides rosea])

HSP 1 Score: 84.0 bits (206), Expect = 6.4e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP  GEAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 26 ETKDTDILAAFRVTPQPGVPP--GEAGAAVAAESSTGTWTTVWTDGLTSLDR 75

[Close]

BLAST of Cmc07g0186681.1 vs. NCBI nr
Match: AYE20222.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Orobanche sp. ARIZ 344844])

HSP 1 Score: 83.6 bits (205), Expect = 8.4e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTDE+TSLDR
Sbjct: 9  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDELTSLDR 58

[Close]

BLAST of Cmc07g0186681.1 vs. ExPASy Swiss-Prot
Match: P92401 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Lupinus microcarpus var. densiflorus OX=61113 GN=rbcL PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-15
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 26 NETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          N+TKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 20 NQTKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 70

[Close]

BLAST of Cmc07g0186681.1 vs. ExPASy Swiss-Prot
Match: P92406 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Lupinus microcarpus OX=53231 GN=rbcL PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-15
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 26 NETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          N+TKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 20 NQTKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 70

[Close]

BLAST of Cmc07g0186681.1 vs. ExPASy Swiss-Prot
Match: P28389 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Casuarina equisetifolia OX=3523 GN=rbcL PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.5e-15
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 20 ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGVTSLDR 69

[Close]

BLAST of Cmc07g0186681.1 vs. ExPASy Swiss-Prot
Match: A9LYA9 (Ribulose bisphosphate carboxylase large chain OS=Acorus americanus OX=263995 GN=rbcL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 7.2e-15
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 30 ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 79

[Close]

BLAST of Cmc07g0186681.1 vs. ExPASy Swiss-Prot
Match: Q3V526 (Ribulose bisphosphate carboxylase large chain OS=Acorus calamus OX=4465 GN=rbcL PE=3 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 7.2e-15
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 30 ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 79

[Close]

BLAST of Cmc07g0186681.1 vs. ExPASy TrEMBL
Match: A0A0D3MEQ6 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Dillenia grandifolia OX=1504417 GN=rbcL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.1e-13
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ+E+PP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 3  ETKDTDILAAFRVTPQTEIPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 52

[Close]

BLAST of Cmc07g0186681.1 vs. ExPASy TrEMBL
Match: A0A4Y5QMG0 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Aerides rosea OX=339046 GN=rbcL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.1e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP  GEAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 26 ETKDTDILAAFRVTPQPGVPP--GEAGAAVAAESSTGTWTTVWTDGLTSLDR 75

[Close]

BLAST of Cmc07g0186681.1 vs. ExPASy TrEMBL
Match: A0A4Y5QME9 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Aerides rosea OX=339046 GN=rbcL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.1e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP  GEAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 26 ETKDTDILAAFRVTPQPGVPP--GEAGAAVAAESSTGTWTTVWTDGLTSLDR 75

[Close]

BLAST of Cmc07g0186681.1 vs. ExPASy TrEMBL
Match: A0A3G1MV98 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Goodyera oblongifolia OX=798534 GN=rbcL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.1e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP  GEAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 21 ETKDTDILAAFRVTPQPGVPP--GEAGAAVAAESSTGTWTTVWTDGLTSLDR 70

[Close]

BLAST of Cmc07g0186681.1 vs. ExPASy TrEMBL
Match: A0A386NCH1 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Orobanche sp. ARIZ 344844 OX=1873173 GN=rbcL PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.1e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTDE+TSLDR
Sbjct: 9  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDELTSLDR 58

[Close]

BLAST of Cmc07g0186681.1 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 80.9 bits (198), Expect = 5.1e-16
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 30 ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 79

The following BLAST results are available for this feature:

BLAST of Cmc07g0186681.1 vs. NCBI nr


Match Name	E-value	Identity	Description
AIG54729.1	6.4e-13	80.77	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Dillenia...	[more]
AUR28390.1	6.4e-13	82.69	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Goodyera...	[more]
QCX35970.1	6.4e-13	82.69	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Aerides ...	[more]
QCX35971.1	6.4e-13	82.69	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Aerides ...	[more]
AYE20222.1	8.4e-13	82.69	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Orobanch...	[more]

BLAST of Cmc07g0186681.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92401	3.2e-15	79.25	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Lupinus microcarpus ...	[more]
P92406	3.2e-15	79.25	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Lupinus microcarpus ...	[more]
P28389	5.5e-15	80.77	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Casuarina equisetifo...	[more]
A9LYA9	7.2e-15	80.77	Ribulose bisphosphate carboxylase large chain OS=Acorus americanus OX=263995 GN=...	[more]
Q3V526	7.2e-15	80.77	Ribulose bisphosphate carboxylase large chain OS=Acorus calamus OX=4465 GN=rbcL ...	[more]

BLAST of Cmc07g0186681.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0D3MEQ6	3.1e-13	80.77	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Dillenia grandifolia...	[more]
A0A4Y5QMG0	3.1e-13	82.69	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Aerides rosea OX=339...	[more]
A0A4Y5QME9	3.1e-13	82.69	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Aerides rosea OX=339...	[more]
A0A3G1MV98	3.1e-13	82.69	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Goodyera oblongifoli...	[more]
A0A386NCH1	4.1e-13	82.69	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Orobanche sp. ARIZ 3...	[more]

BLAST of Cmc07g0186681.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	5.1e-16	80.77	ribulose-bisphosphate carboxylases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	GENE3D	3.30.70.150		coord: 9..78 e-value: 7.1E-15 score: 57.0
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	SUPERFAMILY	54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 19..77
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 26..74 e-value: 8.9E-12 score: 45.3
IPR033966	RuBisCO	PANTHER	PTHR42704	RIBULOSE BISPHOSPHATE CARBOXYLASE	coord: 27..78
None	No IPR available	PANTHER	PTHR42704:SF7	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	coord: 27..78

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0186681	Cmc07g0186681	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0186681.1-exon	Cmc07g0186681.1-exon-CMiso1.1chr07:4631528..4631764	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0186681.1-cds	Cmc07g0186681.1-cds-CMiso1.1chr07:4631528..4631764	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0186681.1	Cmc07g0186681.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity