Cmc07g0186681.1 (mRNA) Melon (Charmono) v1.1

Overview
NameCmc07g0186681.1
TypemRNA
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibulose bisphosphate carboxylase large chain
LocationCMiso1.1chr07: 4631528 .. 4631764 (-)
Sequence length237
RNA-Seq ExpressionCmc07g0186681.1
SyntenyCmc07g0186681.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGATCGGATGATTTGTCACTTTCTAAATCTTATTCTTTCTCAACAATATCTCTGTCTTATGGAGCTTTATAATGAAACCAAAGATACTGATATCTTGGTAGCATTCCAAGTAACTCCTCAATCAGAAGTTCCACCGCTTCGTGGGGAAGCAGGGATCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGAGATTACCAGTCTTGATCGTTGA

mRNA sequence

ATGCAAGATCGGATGATTTGTCACTTTCTAAATCTTATTCTTTCTCAACAATATCTCTGTCTTATGGAGCTTTATAATGAAACCAAAGATACTGATATCTTGGTAGCATTCCAAGTAACTCCTCAATCAGAAGTTCCACCGCTTCGTGGGGAAGCAGGGATCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGAGATTACCAGTCTTGATCGTTGA

Coding sequence (CDS)

ATGCAAGATCGGATGATTTGTCACTTTCTAAATCTTATTCTTTCTCAACAATATCTCTGTCTTATGGAGCTTTATAATGAAACCAAAGATACTGATATCTTGGTAGCATTCCAAGTAACTCCTCAATCAGAAGTTCCACCGCTTCGTGGGGAAGCAGGGATCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGAGATTACCAGTCTTGATCGTTGA

Protein sequence

MQDRMICHFLNLILSQQYLCLMELYNETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR
Homology
BLAST of Cmc07g0186681.1 vs. NCBI nr
Match: AIG54729.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Dillenia grandifolia])

HSP 1 Score: 84.0 bits (206), Expect = 6.4e-13
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ+E+PP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 3  ETKDTDILAAFRVTPQTEIPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 52

BLAST of Cmc07g0186681.1 vs. NCBI nr
Match: AUR28390.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Goodyera oblongifolia])

HSP 1 Score: 84.0 bits (206), Expect = 6.4e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP  GEAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 21 ETKDTDILAAFRVTPQPGVPP--GEAGAAVAAESSTGTWTTVWTDGLTSLDR 70

BLAST of Cmc07g0186681.1 vs. NCBI nr
Match: QCX35970.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Aerides rosea])

HSP 1 Score: 84.0 bits (206), Expect = 6.4e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP  GEAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 26 ETKDTDILAAFRVTPQPGVPP--GEAGAAVAAESSTGTWTTVWTDGLTSLDR 75

BLAST of Cmc07g0186681.1 vs. NCBI nr
Match: QCX35971.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Aerides rosea])

HSP 1 Score: 84.0 bits (206), Expect = 6.4e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP  GEAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 26 ETKDTDILAAFRVTPQPGVPP--GEAGAAVAAESSTGTWTTVWTDGLTSLDR 75

BLAST of Cmc07g0186681.1 vs. NCBI nr
Match: AYE20222.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Orobanche sp. ARIZ 344844])

HSP 1 Score: 83.6 bits (205), Expect = 8.4e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTDE+TSLDR
Sbjct: 9  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDELTSLDR 58

BLAST of Cmc07g0186681.1 vs. ExPASy Swiss-Prot
Match: P92401 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Lupinus microcarpus var. densiflorus OX=61113 GN=rbcL PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-15
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 26 NETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          N+TKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 20 NQTKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 70

BLAST of Cmc07g0186681.1 vs. ExPASy Swiss-Prot
Match: P92406 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Lupinus microcarpus OX=53231 GN=rbcL PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-15
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 26 NETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          N+TKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 20 NQTKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 70

BLAST of Cmc07g0186681.1 vs. ExPASy Swiss-Prot
Match: P28389 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Casuarina equisetifolia OX=3523 GN=rbcL PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.5e-15
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 20 ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGVTSLDR 69

BLAST of Cmc07g0186681.1 vs. ExPASy Swiss-Prot
Match: A9LYA9 (Ribulose bisphosphate carboxylase large chain OS=Acorus americanus OX=263995 GN=rbcL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 7.2e-15
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 30 ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 79

BLAST of Cmc07g0186681.1 vs. ExPASy Swiss-Prot
Match: Q3V526 (Ribulose bisphosphate carboxylase large chain OS=Acorus calamus OX=4465 GN=rbcL PE=3 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 7.2e-15
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 30 ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 79

BLAST of Cmc07g0186681.1 vs. ExPASy TrEMBL
Match: A0A0D3MEQ6 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Dillenia grandifolia OX=1504417 GN=rbcL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.1e-13
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ+E+PP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 3  ETKDTDILAAFRVTPQTEIPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 52

BLAST of Cmc07g0186681.1 vs. ExPASy TrEMBL
Match: A0A4Y5QMG0 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Aerides rosea OX=339046 GN=rbcL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.1e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP  GEAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 26 ETKDTDILAAFRVTPQPGVPP--GEAGAAVAAESSTGTWTTVWTDGLTSLDR 75

BLAST of Cmc07g0186681.1 vs. ExPASy TrEMBL
Match: A0A4Y5QME9 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Aerides rosea OX=339046 GN=rbcL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.1e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP  GEAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 26 ETKDTDILAAFRVTPQPGVPP--GEAGAAVAAESSTGTWTTVWTDGLTSLDR 75

BLAST of Cmc07g0186681.1 vs. ExPASy TrEMBL
Match: A0A3G1MV98 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Goodyera oblongifolia OX=798534 GN=rbcL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.1e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP  GEAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 21 ETKDTDILAAFRVTPQPGVPP--GEAGAAVAAESSTGTWTTVWTDGLTSLDR 70

BLAST of Cmc07g0186681.1 vs. ExPASy TrEMBL
Match: A0A386NCH1 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Orobanche sp. ARIZ 344844 OX=1873173 GN=rbcL PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.1e-13
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTDE+TSLDR
Sbjct: 9  ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDELTSLDR 58

BLAST of Cmc07g0186681.1 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 80.9 bits (198), Expect = 5.1e-16
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 27 ETKDTDILVAFQVTPQSEVPPLRGEAGIAVAAESSTGTWTTVWTDEITSLDR 79
          ETKDTDIL AF+VTPQ  VPP   EAG AVAAESSTGTWTTVWTD +TSLDR
Sbjct: 30 ETKDTDILAAFRVTPQPGVPP--EEAGAAVAAESSTGTWTTVWTDGLTSLDR 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AIG54729.16.4e-1380.77ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Dillenia... [more]
AUR28390.16.4e-1382.69ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Goodyera... [more]
QCX35970.16.4e-1382.69ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Aerides ... [more]
QCX35971.16.4e-1382.69ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Aerides ... [more]
AYE20222.18.4e-1382.69ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Orobanch... [more]
Match NameE-valueIdentityDescription
P924013.2e-1579.25Ribulose bisphosphate carboxylase large chain (Fragment) OS=Lupinus microcarpus ... [more]
P924063.2e-1579.25Ribulose bisphosphate carboxylase large chain (Fragment) OS=Lupinus microcarpus ... [more]
P283895.5e-1580.77Ribulose bisphosphate carboxylase large chain (Fragment) OS=Casuarina equisetifo... [more]
A9LYA97.2e-1580.77Ribulose bisphosphate carboxylase large chain OS=Acorus americanus OX=263995 GN=... [more]
Q3V5267.2e-1580.77Ribulose bisphosphate carboxylase large chain OS=Acorus calamus OX=4465 GN=rbcL ... [more]
Match NameE-valueIdentityDescription
A0A0D3MEQ63.1e-1380.77Ribulose bisphosphate carboxylase large chain (Fragment) OS=Dillenia grandifolia... [more]
A0A4Y5QMG03.1e-1382.69Ribulose bisphosphate carboxylase large chain (Fragment) OS=Aerides rosea OX=339... [more]
A0A4Y5QME93.1e-1382.69Ribulose bisphosphate carboxylase large chain (Fragment) OS=Aerides rosea OX=339... [more]
A0A3G1MV983.1e-1382.69Ribulose bisphosphate carboxylase large chain (Fragment) OS=Goodyera oblongifoli... [more]
A0A386NCH14.1e-1382.69Ribulose bisphosphate carboxylase large chain (Fragment) OS=Orobanche sp. ARIZ 3... [more]
Match NameE-valueIdentityDescription
ATCG00490.15.1e-1680.77ribulose-bisphosphate carboxylases [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036422RuBisCO large subunit, N-terminal domain superfamilyGENE3D3.30.70.150coord: 9..78
e-value: 7.1E-15
score: 57.0
IPR036422RuBisCO large subunit, N-terminal domain superfamilySUPERFAMILY54966RuBisCO, large subunit, small (N-terminal) domaincoord: 19..77
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalPFAMPF02788RuBisCO_large_Ncoord: 26..74
e-value: 8.9E-12
score: 45.3
IPR033966RuBisCOPANTHERPTHR42704RIBULOSE BISPHOSPHATE CARBOXYLASEcoord: 27..78
NoneNo IPR availablePANTHERPTHR42704:SF7RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAINcoord: 27..78

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cmc07g0186681Cmc07g0186681gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc07g0186681.1-exonCmc07g0186681.1-exon-CMiso1.1chr07:4631528..4631764exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc07g0186681.1-cdsCmc07g0186681.1-cds-CMiso1.1chr07:4631528..4631764CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cmc07g0186681.1Cmc07g0186681.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015977 carbon fixation
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
cellular_component GO:0009507 chloroplast
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004497 monooxygenase activity