Cmc03g0062581.1 (mRNA) Melon (Charmono) v1.1

Overview
NameCmc03g0062581.1
TypemRNA
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr03: 2837945 .. 2839378 (+)
Sequence length926
RNA-Seq ExpressionCmc03g0062581.1
SyntenyCmc03g0062581.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTCCTCCAAGGTTCTCTAACACTAATATATATTAACAGAATATTTGTAATCACAATCCCAAGCCTGTAACCGTGCAATATAGTTGATCTTTCGAGTTTGTTTCAGTGGCTGCATTGCAGAATGAAGAGAGCCCGATGAAGATTTTCGACAATCTTTTGATGCTACTTTTCAAATATAGTTTTCTTTTTCATAATTATGAGGGTATTTTGAAGTGAAATAACCATGATATGACAAAGGCGAAAACCATGCAGGCGAGTAAGAAATTCAGGAACCTGTGGCCTTGCCAGAAGTTCCGAGCCTCTGTAGAGTGTGGTGGCATCACTATGGCAGCTGTAGCAGTTGCTGTTGTTGCTTCGTTTGGTTCATTGCGTTGCTCTGTTGAATCGGCTTCGTAAGTACCAGTAACATTGTGTGCAATTGATCCACAGATCTCACATGTGCTGTAACAAATTACACATGGGTCAGTGCAAGGTACATGTTGAGCTTTTCCAAGTTTGAACAGTATTTGCTTTTCCCCCCGTCTTTTATTCCAGATAACATAACTTTTCAAATTACTTCAAACACCAAAGTCAGCTAAAAGAACAACATGAATCACAATCAAGTTTTATAGAACGCTCTCTAATAGTGAAAAGTTTTCCTGGCCAAACTATATATGTTTGCTAGCAGGGTCAAACGCAATAAAGTTCTTCACAGACCGACTATTACAATTCAATTCTTTCAATACGCTCATAGATTCATCATGGGAAAAATATGTTCAACCTATGCAGAAGATATAGTGAAGATAGTTTTTTGGCTTCTTACAGTCTACAGACCCTTTGACCGTCATCTGTATGTAATAAGCTTTAATCAATCAACAAATTTGACAATGAAAAGAGGTTTCAGATAGCGATGCTTAATTCAGGTTACAGTATAATGAATGAGGAAATAACCATGTTCAAATATTGTATCTCTTATCTATAAATTTAAATGTGTTTCCTAGGTTCTATGGGAGATGAATGTTTGATACCGTGAAGTATTCGACAGACAAAATAGCTTCACAGTCTTGAATGGTGATTTGAGAGTGGTGAAATGAAATAACAATCAACCTCAGACTGAAGCTCTAACTTTGTCCATACAAGTTTAAATACATTCTGAACAAAGGATGATACGAATATTGATAGCTATGCCGATCACGGAACTTGTGAAAATGTAAATATAGGTTAAACCTCAAAGAAAGATGTTCGAAACTCAAAACAAAACCAATCTATATTGTATCATAAATAATATATGTACTAATCTTCGCAACATCTTCTGTAGGACAGTGTGAACTGATAAAGAAATGGTTAACAAGGAAAAAAGAATCTCACTGATTGGTCTTTTTAGGAATAAATGTTGATTCCATATATTTTTGTAGATACCAACATCATGTAATGAAGTAATAAAGAATATGTA

mRNA sequence

CTCTTCCTCCAAGGTTCTCTAACACTAATATATATTAACAGAATATTTGTAATCACAATCCCAAGCCTGTAACCGTGCAATATAGTTGATCTTTCGAGTTTGTTTCAGTGGCTGCATTGCAGAATGAAGAGAGCCCGATGAAGATTTTCGACAATCTTTTGATGCTACTTTTCAAATATAGTTTTCTTTTTCATAATTATGAGGGTATTTTGAAGTGAAATAACCATGATATGACAAAGGCGAAAACCATGCAGGCGAGTAAGAAATTCAGGAACCTGTGGCCTTGCCAGAAGTTCCGAGCCTCTGTAGAGTGTGGTGGCATCACTATGGCAGCTGTAGCAGTTGCTGTTGTTGCTTCGTTTGGTTCATTGCGTTGCTCTGTTGAATCGGCTTCGTAAGTACCAGTAACATTGTGTGCAATTGATCCACAGATCTCACATGTGCTGTAACAAATTACACATGGGTCAGTGCAAGGTTCTATGGGAGATGAATGTTTGATACCGTGAAGTATTCGACAGACAAAATAGCTTCACAGTCTTGAATGGTGATTTGAGAGTGGTGAAATGAAATAACAATCAACCTCAGACTGAAGCTCTAACTTTGTCCATACAAGTTTAAATACATTCTGAACAAAGGATGATACGAATATTGATAGCTATGCCGATCACGGAACTTGTGAAAATGTAAATATAGGTTAAACCTCAAAGAAAGATGTTCGAAACTCAAAACAAAACCAATCTATATTGTATCATAAATAATATATGTACTAATCTTCGCAACATCTTCTGTAGGACAGTGTGAACTGATAAAGAAATGGTTAACAAGGAAAAAAGAATCTCACTGATTGGTCTTTTTAGGAATAAATGTTGATTCCATATATTTTTGTAGATACCAACATCATGTAATGAAGTAATAAAGAATATGTA

Coding sequence (CDS)

ATGACAAAGGCGAAAACCATGCAGGCGAGTAAGAAATTCAGGAACCTGTGGCCTTGCCAGAAGTTCCGAGCCTCTGTAGAGTGTGGTGGCATCACTATGGCAGCTGTAGCAGTTGCTGTTGTTGCTTCGTTTGGTTCATTGCGTTGCTCTGTTGAATCGGCTTCGTAA

Protein sequence

MTKAKTMQASKKFRNLWPCQKFRASVECGGITMAAVAVAVVASFGSLRCSVESAS
Homology
[Close]
BLAST of Cmc03g0062581.1 vs. NCBI nr
Match: EEF31971.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 32/55 (58.18%), Postives = 33/55 (60.00%), Query Frame = 0 

Query: 1  MTKAKTMQASKKFRNLWPCQKFRASVECGGITMAAVAVAVVASFGSLRCSVESAS 56
          MTKAKT+ ASKKFRN WPCQK R S  C   T    AVA  AS  S  CS  S S
Sbjct: 35 MTKAKTIHASKKFRNRWPCQKCRVSAVCTDGT----AVATAASLASFHCSTNSTS 85

[Close]
BLAST of Cmc03g0062581.1 vs. ExPASy TrEMBL
Match: B9SWN2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0498030 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.4e-05
Identity = 32/55 (58.18%), Postives = 33/55 (60.00%), Query Frame = 0 

Query: 1  MTKAKTMQASKKFRNLWPCQKFRASVECGGITMAAVAVAVVASFGSLRCSVESAS 56
          MTKAKT+ ASKKFRN WPCQK R S  C   T    AVA  AS  S  CS  S S
Sbjct: 35 MTKAKTIHASKKFRNRWPCQKCRVSAVCTDGT----AVATAASLASFHCSTNSTS 85

The following BLAST results are available for this feature:
BLAST of Cmc03g0062581.1 vs. NCBI nr
Match NameE-valueIdentityDescription
EEF31971.11.7e-0458.18conserved hypothetical protein [Ricinus communis][more]
BLAST of Cmc03g0062581.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc03g0062581.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
B9SWN28.4e-0558.18Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0498030 PE=4 SV=1[more]
BLAST of Cmc03g0062581.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cmc03g0062581Cmc03g0062581gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc03g0062581.1-exonCmc03g0062581.1-exon-CMiso1.1chr03:2837945..2838418exon
Cmc03g0062581.1-exonCmc03g0062581.1-exon-CMiso1.1chr03:2838927..2839378exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc03g0062581.1-five_prime_utrCmc03g0062581.1-five_prime_utr-CMiso1.1chr03:2837945..2838174five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc03g0062581.1-cdsCmc03g0062581.1-cds-CMiso1.1chr03:2838175..2838342CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc03g0062581.1-three_prime_utrCmc03g0062581.1-three_prime_utr-CMiso1.1chr03:2838343..2838418three_prime_UTR
Cmc03g0062581.1-three_prime_utrCmc03g0062581.1-three_prime_utr-CMiso1.1chr03:2838927..2839378three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cmc03g0062581.1Cmc03g0062581.1-proteinpolypeptide