Cmc00g0001541.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc00g0001541.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr00: 1596529 .. 1597126 (+)
Sequence length	522
RNA-Seq Expression	Cmc00g0001541.1
Synteny	Cmc00g0001541.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGGATAGTTCAATGTGCTCATCAGCGCCTGACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTTGAACCGGGGTTTGAAACCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAACGGAGCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGTACCATTCGAGCCTTTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATAGGATTTTCTTAATCCTCCCTTCCCGAAAGCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCTTCCGCAGGGACCAGGAGATTTGAAAAAGGATCTGTCAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTC

mRNA sequence

CATGGATAGTTCAATGTGCTCATCAGCGCCTGACCCTGAGATGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAACGGAGCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGTACCATTCGAGCCTTTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATAGGATTTTCTTAATCCTCCCTTCCCGAAAGCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCTTCCGCAGGGACCAGGAGATTTGAAAAAGGATCTGTCAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTC

Coding sequence (CDS)

ATGGATAGTTCAATGTGCTCATCAGCGCCTGACCCTGAGATGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAA

Protein sequence

MDSSMCSSAPDPEMRIDGAIQVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK

Homology

[Close]

BLAST of Cmc00g0001541.1 vs. NCBI nr
Match: KAA0038988.1 (photosystem II CP47 chlorophyll apoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1   MDSSMCSSAPDPEMRIDGAIQVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMD 60
           MDSSMCSSAPD EMRIDGAIQVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMD
Sbjct: 41  MDSSMCSSAPDLEMRIDGAIQVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMD 100

Query: 61  SYLSSTGLG 70
           SYLSST  G
Sbjct: 101 SYLSSTAYG 109

[Close]

BLAST of Cmc00g0001541.1 vs. NCBI nr
Match: YP_009259933.1 (hypothetical protein [Lagerstroemia indica] >YP_009259946.1 hypothetical protein [Lagerstroemia indica] >ANN13724.1 hypothetical protein [Lagerstroemia indica] >ANN13737.1 hypothetical protein [Lagerstroemia indica])

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 73/100 (73.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1   MDSSMCSSAPDPEM-------------------------RIDGAIQVRSNVDPTFYSLVG 60
           MDSSMCSSAPDPEM                         RIDGAIQVRSNVDPTFYSLVG
Sbjct: 14  MDSSMCSSAPDPEMWIIQGTLAWRTSPVRTGFETKPLLRRIDGAIQVRSNVDPTFYSLVG 73

Query: 61  SGRSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 76
           SGRSGGDH GSSLLENPYIPYQ MDSYLSSTGLGSASMGK
Sbjct: 74  SGRSGGDHRGSSLLENPYIPYQCMDSYLSSTGLGSASMGK 113

[Close]

BLAST of Cmc00g0001541.1 vs. NCBI nr
Match: YP_009574037.1 (hypothetical protein [Pemphis acidula] >YP_009574050.1 hypothetical protein [Pemphis acidula] >QBM31230.1 hypothetical protein [Pemphis acidula] >QBM31243.1 hypothetical protein [Pemphis acidula])

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 73/100 (73.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1   MDSSMCSSAPDPEM-------------------------RIDGAIQVRSNVDPTFYSLVG 60
           MDSSMCSSAPDPEM                         RIDGAIQVRSNVDPTFYSLVG
Sbjct: 14  MDSSMCSSAPDPEMWIIQGTLAWRTSPVRTGFETKPLLRRIDGAIQVRSNVDPTFYSLVG 73

Query: 61  SGRSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 76
           SGRSGGDH GSSLLENPYIPYQ MDSYLSSTGLGSASMGK
Sbjct: 74  SGRSGGDHHGSSLLENPYIPYQCMDSYLSSTGLGSASMGK 113

[Close]

BLAST of Cmc00g0001541.1 vs. NCBI nr
Match: OWM76770.1 (hypothetical protein CDL15_Pgr004982 [Punica granatum])

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 73/100 (73.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1   MDSSMCSSAPDPEM-------------------------RIDGAIQVRSNVDPTFYSLVG 60
           MDSSMCSSAPDPEM                         RIDGAIQVRSNVDPTFYSLVG
Sbjct: 1   MDSSMCSSAPDPEMWIIQGTLAWRTSPVRTGFETKPLLRRIDGAIQVRSNVDPTFYSLVG 60

Query: 61  SGRSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 76
           SGRSGGDH GSSLLENPYIPYQ MDSYLSSTGLGSASMGK
Sbjct: 61  SGRSGGDHHGSSLLENPYIPYQCMDSYLSSTGLGSASMGK 100

[Close]

BLAST of Cmc00g0001541.1 vs. NCBI nr
Match: KAF8106375.1 (hypothetical protein N665_0142s0014 [Sinapis alba])

HSP 1 Score: 134.0 bits (336), Expect = 5.2e-28
Identity = 70/82 (85.37%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 1  MDSSMCSSAPDPEMRI-------DGAIQVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPY 60
          MDSSMCSSAPDPEM I        GAIQVRSNVDPTFYSLVGSGRSGGDH GSSLLENPY
Sbjct: 1  MDSSMCSSAPDPEMWIIQGTLAWHGAIQVRSNVDPTFYSLVGSGRSGGDHHGSSLLENPY 60

Query: 61 IPYQYMDSYLSSTGLGSASMGK 76
          IPYQ MDSYLSS GLGSASMGK
Sbjct: 61 IPYQCMDSYLSSAGLGSASMGK 82

[Close]

BLAST of Cmc00g0001541.1 vs. ExPASy Swiss-Prot
Match: Q49KT9 (Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 5.8e-30
Identity = 72/100 (72.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1   MDSSMCSSAPDPEM-------------------------RIDGAIQVRSNVDPTFYSLVG 60
           MDSSMCSSAPDPEM                         RIDGAIQVRSNVDPTFYSLVG
Sbjct: 14  MDSSMCSSAPDPEMWIIQGTLAWRTSPVRTGFETKPLLRRIDGAIQVRSNVDPTFYSLVG 73

Query: 61  SGRSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 76
           SGRSGGD  GSSLLENPYIPYQ MDSYLSSTGLGSASMGK
Sbjct: 74  SGRSGGDPHGSSLLENPYIPYQCMDSYLSSTGLGSASMGK 113

[Close]

BLAST of Cmc00g0001541.1 vs. ExPASy Swiss-Prot
Match: Q85WV9 (Uncharacterized protein ycf68 OS=Pinus koraiensis OX=88728 GN=ycf68 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-15
Identity = 42/56 (75.00%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 15 RIDGAIQVRSNVDPTFYSLVGSGRSGGD---HLGSSLLENPYIPYQYMDSYLSSTG 68
          RIDGAIQVRSN DPTFYS V  G  GG    H GSSLLENPYIPYQ MD YLS TG
Sbjct: 20 RIDGAIQVRSNADPTFYSFVDLGGPGGPVVIHHGSSLLENPYIPYQCMDGYLSGTG 75

[Close]

BLAST of Cmc00g0001541.1 vs. ExPASy Swiss-Prot
Match: P52807 (Uncharacterized protein ycf68 OS=Pinus thunbergii OX=3350 GN=ycf68 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.3e-15
Identity = 42/56 (75.00%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 15 RIDGAIQVRSNVDPTFYSLVGSGRSGGD---HLGSSLLENPYIPYQYMDSYLSSTG 68
          RIDGAIQVRSN DPTFYS V  G  G     HLGSSLLENPYIPYQ MD YLS TG
Sbjct: 20 RIDGAIQVRSNTDPTFYSFVDLGGPGVPVVIHLGSSLLENPYIPYQCMDGYLSGTG 75

[Close]

BLAST of Cmc00g0001541.1 vs. ExPASy Swiss-Prot
Match: P03938 (Uncharacterized protein ycf68 OS=Zea mays OX=4577 GN=ycf68 PE=3 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-06
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 15 RIDGAIQVRSNVDPTFYSLVGSGRSGG 42
          RIDGAIQVRS+VD TFYSLVGSGRSGG
Sbjct: 20 RIDGAIQVRSHVDRTFYSLVGSGRSGG 46

[Close]

BLAST of Cmc00g0001541.1 vs. ExPASy Swiss-Prot
Match: Q6L3C9 (Uncharacterized protein ycf68 OS=Saccharum hybrid OX=15819 GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-06
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 15 RIDGAIQVRSNVDPTFYSLVGSGRSGG 42
          RIDGAIQVRS+VD TFYSLVGSGRSGG
Sbjct: 20 RIDGAIQVRSHVDRTFYSLVGSGRSGG 46

[Close]

BLAST of Cmc00g0001541.1 vs. ExPASy TrEMBL
Match: A0A5A7T7Y5 (Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00690 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.7e-29
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1   MDSSMCSSAPDPEMRIDGAIQVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMD 60
           MDSSMCSSAPD EMRIDGAIQVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMD
Sbjct: 41  MDSSMCSSAPDLEMRIDGAIQVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMD 100

Query: 61  SYLSSTGLG 70
           SYLSST  G
Sbjct: 101 SYLSSTAYG 109

[Close]

BLAST of Cmc00g0001541.1 vs. ExPASy TrEMBL
Match: A0A193BNJ9 (Uncharacterized protein ycf68 OS=Lagerstroemia indica OX=141186 GN=orf113 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 73/100 (73.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1   MDSSMCSSAPDPEM-------------------------RIDGAIQVRSNVDPTFYSLVG 60
           MDSSMCSSAPDPEM                         RIDGAIQVRSNVDPTFYSLVG
Sbjct: 14  MDSSMCSSAPDPEMWIIQGTLAWRTSPVRTGFETKPLLRRIDGAIQVRSNVDPTFYSLVG 73

Query: 61  SGRSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 76
           SGRSGGDH GSSLLENPYIPYQ MDSYLSSTGLGSASMGK
Sbjct: 74  SGRSGGDHRGSSLLENPYIPYQCMDSYLSSTGLGSASMGK 113

[Close]

BLAST of Cmc00g0001541.1 vs. ExPASy TrEMBL
Match: A0A482E9T2 (Uncharacterized protein ycf68 OS=Pemphis acidula OX=126635 GN=orf113 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 73/100 (73.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1   MDSSMCSSAPDPEM-------------------------RIDGAIQVRSNVDPTFYSLVG 60
           MDSSMCSSAPDPEM                         RIDGAIQVRSNVDPTFYSLVG
Sbjct: 14  MDSSMCSSAPDPEMWIIQGTLAWRTSPVRTGFETKPLLRRIDGAIQVRSNVDPTFYSLVG 73

Query: 61  SGRSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 76
           SGRSGGDH GSSLLENPYIPYQ MDSYLSSTGLGSASMGK
Sbjct: 74  SGRSGGDHHGSSLLENPYIPYQCMDSYLSSTGLGSASMGK 113

[Close]

BLAST of Cmc00g0001541.1 vs. ExPASy TrEMBL
Match: A0A218WWR3 (Uncharacterized protein ycf68 OS=Punica granatum OX=22663 GN=CDL15_Pgr004982 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 73/100 (73.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1   MDSSMCSSAPDPEM-------------------------RIDGAIQVRSNVDPTFYSLVG 60
           MDSSMCSSAPDPEM                         RIDGAIQVRSNVDPTFYSLVG
Sbjct: 1   MDSSMCSSAPDPEMWIIQGTLAWRTSPVRTGFETKPLLRRIDGAIQVRSNVDPTFYSLVG 60

Query: 61  SGRSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 76
           SGRSGGDH GSSLLENPYIPYQ MDSYLSSTGLGSASMGK
Sbjct: 61  SGRSGGDHHGSSLLENPYIPYQCMDSYLSSTGLGSASMGK 100

[Close]

BLAST of Cmc00g0001541.1 vs. ExPASy TrEMBL
Match: A0A6N2AS63 (Uncharacterized protein ycf68 OS=Solanum chilense OX=4083 GN=EJD97_024993 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.6e-28
Identity = 70/83 (84.34%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MDSSMCSSAPDPEM--------RIDGAIQVRSNVDPTFYSLVGSGRSGGDHLGSSLLENP 60
          MDSSMCSSAPDPEM         IDGAI+VRSNVDPTF SLVGSGRSGGDH GSSLLENP
Sbjct: 1  MDSSMCSSAPDPEMWIIQGTLAWIDGAIRVRSNVDPTFDSLVGSGRSGGDHHGSSLLENP 60

Query: 61 YIPYQYMDSYLSSTGLGSASMGK 76
          YIPYQ MDSYLSSTGLGSASMGK
Sbjct: 61 YIPYQCMDSYLSSTGLGSASMGK 83

The following BLAST results are available for this feature:

BLAST of Cmc00g0001541.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038988.1	1.4e-28	95.65	photosystem II CP47 chlorophyll apoprotein [Cucumis melo var. makuwa]	[more]
YP_009259933.1	2.3e-28	73.00	hypothetical protein [Lagerstroemia indica] >YP_009259946.1 hypothetical protein...	[more]
YP_009574037.1	3.1e-28	73.00	hypothetical protein [Pemphis acidula] >YP_009574050.1 hypothetical protein [Pem...	[more]
OWM76770.1	3.1e-28	73.00	hypothetical protein CDL15_Pgr004982 [Punica granatum]	[more]
KAF8106375.1	5.2e-28	85.37	hypothetical protein N665_0142s0014 [Sinapis alba]	[more]

BLAST of Cmc00g0001541.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q49KT9	5.8e-30	72.00	Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus OX=71271 GN...	[more]
Q85WV9	3.1e-15	75.00	Uncharacterized protein ycf68 OS=Pinus koraiensis OX=88728 GN=ycf68 PE=3 SV=1	[more]
P52807	5.3e-15	75.00	Uncharacterized protein ycf68 OS=Pinus thunbergii OX=3350 GN=ycf68 PE=3 SV=1	[more]
P03938	2.6e-06	92.59	Uncharacterized protein ycf68 OS=Zea mays OX=4577 GN=ycf68 PE=3 SV=2	[more]
Q6L3C9	2.6e-06	92.59	Uncharacterized protein ycf68 OS=Saccharum hybrid OX=15819 GN=ycf68-1 PE=3 SV=1	[more]

BLAST of Cmc00g0001541.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T7Y5	6.7e-29	95.65	Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A193BNJ9	1.1e-28	73.00	Uncharacterized protein ycf68 OS=Lagerstroemia indica OX=141186 GN=orf113 PE=3 S...	[more]
A0A482E9T2	1.5e-28	73.00	Uncharacterized protein ycf68 OS=Pemphis acidula OX=126635 GN=orf113 PE=3 SV=1	[more]
A0A218WWR3	1.5e-28	73.00	Uncharacterized protein ycf68 OS=Punica granatum OX=22663 GN=CDL15_Pgr004982 PE=...	[more]
A0A6N2AS63	5.6e-28	84.34	Uncharacterized protein ycf68 OS=Solanum chilense OX=4083 GN=EJD97_024993 PE=3 S...	[more]

BLAST of Cmc00g0001541.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022546	Uncharacterised protein family Ycf68	PFAM	PF10839	DUF2647	coord: 15..42 e-value: 9.0E-15 score: 54.5
IPR022546	Uncharacterised protein family Ycf68	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 1..75
None	No IPR available	PANTHER	PTHR34890:SF7	BNAUNNG00850D PROTEIN	coord: 1..75

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc00g0001541	Cmc00g0001541	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001541.1-exon	Cmc00g0001541.1-exon-CMiso1.1chr00:1596529..1596570	exon
Cmc00g0001541.1-exon	Cmc00g0001541.1-exon-CMiso1.1chr00:1596647..1597126	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001541.1-five_prime_utr	Cmc00g0001541.1-five_prime_utr-CMiso1.1chr00:1596529..1596529	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001541.1-cds	Cmc00g0001541.1-cds-CMiso1.1chr00:1596530..1596570	CDS
Cmc00g0001541.1-cds	Cmc00g0001541.1-cds-CMiso1.1chr00:1596647..1596833	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001541.1-three_prime_utr	Cmc00g0001541.1-three_prime_utr-CMiso1.1chr00:1596834..1597126	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001541.1	Cmc00g0001541.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009521	photosystem
cellular_component	GO:0009536	plastid
molecular_function	GO:0016168	chlorophyll binding