Cmc00g0001541.1 (mRNA) Melon (Charmono) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATGGATAGTTCAATGTGCTCATCAGCGCCTGACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTTGAACCGGGGTTTGAAACCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAACGGAGCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGTACCATTCGAGCCTTTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATAGGATTTTCTTAATCCTCCCTTCCCGAAAGCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCTTCCGCAGGGACCAGGAGATTTGAAAAAGGATCTGTCAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTC CATGGATAGTTCAATGTGCTCATCAGCGCCTGACCCTGAGATGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAACGGAGCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGTACCATTCGAGCCTTTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATAGGATTTTCTTAATCCTCCCTTCCCGAAAGCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCTTCCGCAGGGACCAGGAGATTTGAAAAAGGATCTGTCAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTC ATGGATAGTTCAATGTGCTCATCAGCGCCTGACCCTGAGATGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAA MDSSMCSSAPDPEMRIDGAIQVRSNVDPTFYSLVGSGRSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK Homology
BLAST of Cmc00g0001541.1 vs. NCBI nr
Match: KAA0038988.1 (photosystem II CP47 chlorophyll apoprotein [Cucumis melo var. makuwa]) HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28 Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. NCBI nr
Match: YP_009259933.1 (hypothetical protein [Lagerstroemia indica] >YP_009259946.1 hypothetical protein [Lagerstroemia indica] >ANN13724.1 hypothetical protein [Lagerstroemia indica] >ANN13737.1 hypothetical protein [Lagerstroemia indica]) HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28 Identity = 73/100 (73.00%), Postives = 73/100 (73.00%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. NCBI nr
Match: YP_009574037.1 (hypothetical protein [Pemphis acidula] >YP_009574050.1 hypothetical protein [Pemphis acidula] >QBM31230.1 hypothetical protein [Pemphis acidula] >QBM31243.1 hypothetical protein [Pemphis acidula]) HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28 Identity = 73/100 (73.00%), Postives = 73/100 (73.00%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. NCBI nr
Match: OWM76770.1 (hypothetical protein CDL15_Pgr004982 [Punica granatum]) HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28 Identity = 73/100 (73.00%), Postives = 73/100 (73.00%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. NCBI nr
Match: KAF8106375.1 (hypothetical protein N665_0142s0014 [Sinapis alba]) HSP 1 Score: 134.0 bits (336), Expect = 5.2e-28 Identity = 70/82 (85.37%), Postives = 70/82 (85.37%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. ExPASy Swiss-Prot
Match: Q49KT9 (Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf68-1 PE=3 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 5.8e-30 Identity = 72/100 (72.00%), Postives = 72/100 (72.00%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. ExPASy Swiss-Prot
Match: Q85WV9 (Uncharacterized protein ycf68 OS=Pinus koraiensis OX=88728 GN=ycf68 PE=3 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 3.1e-15 Identity = 42/56 (75.00%), Postives = 42/56 (75.00%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. ExPASy Swiss-Prot
Match: P52807 (Uncharacterized protein ycf68 OS=Pinus thunbergii OX=3350 GN=ycf68 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 5.3e-15 Identity = 42/56 (75.00%), Postives = 42/56 (75.00%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. ExPASy Swiss-Prot
Match: P03938 (Uncharacterized protein ycf68 OS=Zea mays OX=4577 GN=ycf68 PE=3 SV=2) HSP 1 Score: 52.4 bits (124), Expect = 2.6e-06 Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. ExPASy Swiss-Prot
Match: Q6L3C9 (Uncharacterized protein ycf68 OS=Saccharum hybrid OX=15819 GN=ycf68-1 PE=3 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 2.6e-06 Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. ExPASy TrEMBL
Match: A0A5A7T7Y5 (Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00690 PE=3 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 6.7e-29 Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. ExPASy TrEMBL
Match: A0A193BNJ9 (Uncharacterized protein ycf68 OS=Lagerstroemia indica OX=141186 GN=orf113 PE=3 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28 Identity = 73/100 (73.00%), Postives = 73/100 (73.00%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. ExPASy TrEMBL
Match: A0A482E9T2 (Uncharacterized protein ycf68 OS=Pemphis acidula OX=126635 GN=orf113 PE=3 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28 Identity = 73/100 (73.00%), Postives = 73/100 (73.00%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. ExPASy TrEMBL
Match: A0A218WWR3 (Uncharacterized protein ycf68 OS=Punica granatum OX=22663 GN=CDL15_Pgr004982 PE=3 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28 Identity = 73/100 (73.00%), Postives = 73/100 (73.00%), Query Frame = 0
BLAST of Cmc00g0001541.1 vs. ExPASy TrEMBL
Match: A0A6N2AS63 (Uncharacterized protein ycf68 OS=Solanum chilense OX=4083 GN=EJD97_024993 PE=3 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 5.6e-28 Identity = 70/83 (84.34%), Postives = 71/83 (85.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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