CmaCh20G011480.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G011480.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr20: 9101804 .. 9104328 (+)
Sequence length423
RNA-Seq ExpressionCmaCh20G011480.1
SyntenyCmaCh20G011480.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCATCTTCATTCTTCAAATTTTAGAACTGTCTTGCCCCAAGTTTCCAAATGGAGATCAACTAAACATGTGAGGAGATATTGGCAATTTGAGATTTTTGTTTCGATTTTTCTTTAGACATGTGAAATCGCTTGTGTAATCGTTTACAATTCATAAGTTTTGTACCAAATAATCTAGGAGTGAAACTGGTTGGAAGTCGAAGATCTGATCGAGCCTCAAGAATGGTAAGAACTGTTATCTTTCACAAGTTACGTATGAAATCGAAAGAAATTAAAAAAAGTAGAAAAATCGTGTTGTTTCTGGAAATTAGAAAATTAAATGGGATTCTTGAAGTAGGTGACTCCCATGAGGTTTGAACTCACGTTGTGTATCACAATCATACTATGAAGAGAGTAAGTTGTGTCCTCACATGCAGATAAAACATGGTGGTGACATGGTAGTTGATAACTCTCCAAAATCGAATTACTTCAAGTTTTTTTTTTTTTAATCAATACTTATGTATAAATACTCACAATTTTCTCATTAGTCCTCGAATAGTAAGTGAAAATAGGTTCAAGATGCATAAATTTTAATCTGAATTAGCATTGAGCCTTAAATGGGAAGAGAGAAACAATATAGAAAGGAAAGGAACCCAAAAAGAAAGATTGAGGGAACAAAAGGAAAAGAAAAGATAGAATAGAAAAGGGCCAATCTGTACCAAATTTAGTGTCAATCGGAGATGCTCGACAACTTAGATTTATATTTATATATAAAAGTGGTGAGGTGGGGTGAGATTAGAGATGAGAAATGATCTGTGAAATCTGTACCAGCTTCTCATTTTTCAGCAATACGGGTGGTTCCCCGCATAAGTTTGGGCCTATGGGTTATGGGTTATGAACGTCTCTGGCTCCCACGTTTTCCAAGTTCTTAATCTTCTTTGATTTTAGGCACAATTGGGAGTGGTTAATGAGTGGGTCGAGGTGGGCTCAACCGATGTAGAACTGGCCCCATCATTTTCCCTCTCCTCTCTTCCTTGTTCAGCGCCACATCCCTCCTATGACCATCTTCGGCGACCACCTCGACGCGACGCTTGCATCTCTGATCGTCCTTTAGCAACGTTGACGAGCATTCGTTAAGTGGGGGTGTACCCAGGCTAGCGAGCGACGGGCTCTCTCCCTCTCGCCTCTGGTGCGAGCAGCAACACACGAACGTTCTGGCGATTGGAAATTTCCGACCAGCGGCGACCCGATCCACGGCACCCACGCTCTTCTGCGATCGATCTCCTCCCTCTCTTACGGTGGCGACAAAGCTGTTTAAACACCTTCGAAGACATTTCGTTAAGGATTGAAGCTGTTATTGTGAGAAACATTGGGTAACAATCACTCTAAGCCCCTTTCGGACTTTTTTAAGCTTTTCAGTTTATGTCCTCTGTTCGTTGTATGCTTTGTATGTTGCACGCACTGTTTGATAAATATGATTTCAATTGTATGCTATTACAAACTGCTATGTTTTCTAGTATGATGTTTACTTATGCCTTTCTTATGTTAAATATGCTTTTATGTTGAGATTTTCTGAAACTCCATGATAGTTTGATGTCTTTGTCAAAAGCATGTTCATGTGGTTACTTTGCTTGAAGCATGTTTTAGAAAGCTTGTTCTTGGATGTAGCATCTCAATCATATAATATGAACTTCAAGGAAGTTGTAAAGAAGGTTGTTCAAATTACTATAAGATAAAGTTAAATTACATTAGGTGAAGTCAAGTTGCAATTAATGTCACATTAAGAAGAATCAAGCTTCATTTGTGCAACAAGGGTTTCAAGATACTTCAAGTGAGGCTTCATTTGTTCTTAGATGGTTACAAGTTTAAGCTAGATGAATGAAATCTAGATTTACAATGTTTCATTAATGCATTTTAAGTTTTGAGACTTTTTATTTACTTTCTTGTTACATATGTTACATTTACATAGTGACTAATTATGGTCATAAAGTATGAAGGTTACCACTCTTGAAATGTCTATGGAAGGTCAAAGAGTTTTATTTTTTAGGCTACATGAAAACATGTATGCTACCTTTGTAAAGTAGACTTGGAAAAGGTAGTAAAAAGAGCATTTCTGCTTTCTTTTAGCAAGGGGTGAAGTTTCTTTGTCAACCTATGTAGTATAGGTTGCATGCTTAGAATCATTCAAGCCTAACATGACCGATCTTGCTTGTGAAATGATCTAAATCTAATCAAGTTTTCTTGCCTTGAGATATTTGATTAACAAAATGATTAGAATCTTATTTTCCCTTGATGTGATTCCTTATTGTCAAGTCTTCGAGGCTTTGGGTATAAATGGTTTGGGTTGCTCGCTCAAGGCCTAGGGAATAAATGATCAACGATTGAACATTGAGTTCTATATGGTAGTGTTGAGGCCCTATGTATAAATGTTTAAGCCATGGACATGCCTCAAAAGAATAAGTCTCAAAGAAACGTGCTGTGACGTTTGATGCATGTTGTATGTTGTTTGTGTGACTCCACAGGTGGAAGCTAACAATTGAGTGA

mRNA sequence

ATGGGTCATCTTCATTCTTCAAATTTTAGAACTGTCTTGCCCCAAGTTTCCAAATGGAGATCAACTAAACATGCACAATTGGGAGTGGTTAATGAGTGGGTCGAGGTGGGCTCAACCGATGTAGAACTGGCCCCATCATTTTCCCTCTCCTCTCTTCCTTGTTCAGCGCCACATCCCTCCTATGACCATCTTCGGCGACCACCTCGACGCGACGCTTGCATCTCTGATCGTCCTTTAGCAACGCTAGCGAGCGACGGGCTCTCTCCCTCTCGCCTCTGGTGCGAGCAGCAACACACGAACGTTCTGGCGATTGGAAATTTCCGACCAGCGGCGACCCGATCCACGGCACCCACGCTCTTCTGCGATCGATCTCCTCCCTCTCTTACGGTGGCGACAAAGCTGTGGAAGCTAACAATTGAGTGA

Coding sequence (CDS)

ATGGGTCATCTTCATTCTTCAAATTTTAGAACTGTCTTGCCCCAAGTTTCCAAATGGAGATCAACTAAACATGCACAATTGGGAGTGGTTAATGAGTGGGTCGAGGTGGGCTCAACCGATGTAGAACTGGCCCCATCATTTTCCCTCTCCTCTCTTCCTTGTTCAGCGCCACATCCCTCCTATGACCATCTTCGGCGACCACCTCGACGCGACGCTTGCATCTCTGATCGTCCTTTAGCAACGCTAGCGAGCGACGGGCTCTCTCCCTCTCGCCTCTGGTGCGAGCAGCAACACACGAACGTTCTGGCGATTGGAAATTTCCGACCAGCGGCGACCCGATCCACGGCACCCACGCTCTTCTGCGATCGATCTCCTCCCTCTCTTACGGTGGCGACAAAGCTGTGGAAGCTAACAATTGAGTGA

Protein sequence

MGHLHSSNFRTVLPQVSKWRSTKHAQLGVVNEWVEVGSTDVELAPSFSLSSLPCSAPHPSYDHLRRPPRRDACISDRPLATLASDGLSPSRLWCEQQHTNVLAIGNFRPAATRSTAPTLFCDRSPPSLTVATKLWKLTIE
Homology
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BLAST of CmaCh20G011480.1 vs. NCBI nr
Match: KAG7011187.1 (hypothetical protein SDJN02_27985, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 83  ASDGLSPSRLWCEQQHTNVLAIGNFRPAATRSTAPTLFCDRSPPSLTV 131
           ASDGLSPSRLWCEQQHTNVLAIGNFRPAATRSTAPTLFCDRSPPSLTV
Sbjct: 14  ASDGLSPSRLWCEQQHTNVLAIGNFRPAATRSTAPTLFCDRSPPSLTV 61

The following BLAST results are available for this feature:
BLAST of CmaCh20G011480.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G011480.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G011480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011187.11.8e-18100.00hypothetical protein SDJN02_27985, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh20G011480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh20G011480CmaCh20G011480gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh20G011480.1:exon:182CmaCh20G011480.1:exon:182exon
CmaCh20G011480.1:exon:183CmaCh20G011480.1:exon:183exon
CmaCh20G011480.1:exon:184CmaCh20G011480.1:exon:184exon
CmaCh20G011480.1:exon:185CmaCh20G011480.1:exon:185exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh20G011480.1:cdsCmaCh20G011480.1:cdsCDS
CmaCh20G011480.1:cdsCmaCh20G011480.1:cds_2CDS
CmaCh20G011480.1:cdsCmaCh20G011480.1:cds_3CDS
CmaCh20G011480.1:cdsCmaCh20G011480.1:cds_4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh20G011480.1CmaCh20G011480.1-proteinpolypeptide