CmaCh20G011480 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G011480
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr20: 9101804 .. 9104328 (+)
RNA-Seq ExpressionCmaCh20G011480
SyntenyCmaCh20G011480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCATCTTCATTCTTCAAATTTTAGAACTGTCTTGCCCCAAGTTTCCAAATGGAGATCAACTAAACATGTGAGGAGATATTGGCAATTTGAGATTTTTGTTTCGATTTTTCTTTAGACATGTGAAATCGCTTGTGTAATCGTTTACAATTCATAAGTTTTGTACCAAATAATCTAGGAGTGAAACTGGTTGGAAGTCGAAGATCTGATCGAGCCTCAAGAATGGTAAGAACTGTTATCTTTCACAAGTTACGTATGAAATCGAAAGAAATTAAAAAAAGTAGAAAAATCGTGTTGTTTCTGGAAATTAGAAAATTAAATGGGATTCTTGAAGTAGGTGACTCCCATGAGGTTTGAACTCACGTTGTGTATCACAATCATACTATGAAGAGAGTAAGTTGTGTCCTCACATGCAGATAAAACATGGTGGTGACATGGTAGTTGATAACTCTCCAAAATCGAATTACTTCAAGTTTTTTTTTTTTTAATCAATACTTATGTATAAATACTCACAATTTTCTCATTAGTCCTCGAATAGTAAGTGAAAATAGGTTCAAGATGCATAAATTTTAATCTGAATTAGCATTGAGCCTTAAATGGGAAGAGAGAAACAATATAGAAAGGAAAGGAACCCAAAAAGAAAGATTGAGGGAACAAAAGGAAAAGAAAAGATAGAATAGAAAAGGGCCAATCTGTACCAAATTTAGTGTCAATCGGAGATGCTCGACAACTTAGATTTATATTTATATATAAAAGTGGTGAGGTGGGGTGAGATTAGAGATGAGAAATGATCTGTGAAATCTGTACCAGCTTCTCATTTTTCAGCAATACGGGTGGTTCCCCGCATAAGTTTGGGCCTATGGGTTATGGGTTATGAACGTCTCTGGCTCCCACGTTTTCCAAGTTCTTAATCTTCTTTGATTTTAGGCACAATTGGGAGTGGTTAATGAGTGGGTCGAGGTGGGCTCAACCGATGTAGAACTGGCCCCATCATTTTCCCTCTCCTCTCTTCCTTGTTCAGCGCCACATCCCTCCTATGACCATCTTCGGCGACCACCTCGACGCGACGCTTGCATCTCTGATCGTCCTTTAGCAACGTTGACGAGCATTCGTTAAGTGGGGGTGTACCCAGGCTAGCGAGCGACGGGCTCTCTCCCTCTCGCCTCTGGTGCGAGCAGCAACACACGAACGTTCTGGCGATTGGAAATTTCCGACCAGCGGCGACCCGATCCACGGCACCCACGCTCTTCTGCGATCGATCTCCTCCCTCTCTTACGGTGGCGACAAAGCTGTTTAAACACCTTCGAAGACATTTCGTTAAGGATTGAAGCTGTTATTGTGAGAAACATTGGGTAACAATCACTCTAAGCCCCTTTCGGACTTTTTTAAGCTTTTCAGTTTATGTCCTCTGTTCGTTGTATGCTTTGTATGTTGCACGCACTGTTTGATAAATATGATTTCAATTGTATGCTATTACAAACTGCTATGTTTTCTAGTATGATGTTTACTTATGCCTTTCTTATGTTAAATATGCTTTTATGTTGAGATTTTCTGAAACTCCATGATAGTTTGATGTCTTTGTCAAAAGCATGTTCATGTGGTTACTTTGCTTGAAGCATGTTTTAGAAAGCTTGTTCTTGGATGTAGCATCTCAATCATATAATATGAACTTCAAGGAAGTTGTAAAGAAGGTTGTTCAAATTACTATAAGATAAAGTTAAATTACATTAGGTGAAGTCAAGTTGCAATTAATGTCACATTAAGAAGAATCAAGCTTCATTTGTGCAACAAGGGTTTCAAGATACTTCAAGTGAGGCTTCATTTGTTCTTAGATGGTTACAAGTTTAAGCTAGATGAATGAAATCTAGATTTACAATGTTTCATTAATGCATTTTAAGTTTTGAGACTTTTTATTTACTTTCTTGTTACATATGTTACATTTACATAGTGACTAATTATGGTCATAAAGTATGAAGGTTACCACTCTTGAAATGTCTATGGAAGGTCAAAGAGTTTTATTTTTTAGGCTACATGAAAACATGTATGCTACCTTTGTAAAGTAGACTTGGAAAAGGTAGTAAAAAGAGCATTTCTGCTTTCTTTTAGCAAGGGGTGAAGTTTCTTTGTCAACCTATGTAGTATAGGTTGCATGCTTAGAATCATTCAAGCCTAACATGACCGATCTTGCTTGTGAAATGATCTAAATCTAATCAAGTTTTCTTGCCTTGAGATATTTGATTAACAAAATGATTAGAATCTTATTTTCCCTTGATGTGATTCCTTATTGTCAAGTCTTCGAGGCTTTGGGTATAAATGGTTTGGGTTGCTCGCTCAAGGCCTAGGGAATAAATGATCAACGATTGAACATTGAGTTCTATATGGTAGTGTTGAGGCCCTATGTATAAATGTTTAAGCCATGGACATGCCTCAAAAGAATAAGTCTCAAAGAAACGTGCTGTGACGTTTGATGCATGTTGTATGTTGTTTGTGTGACTCCACAGGTGGAAGCTAACAATTGAGTGA

mRNA sequence

ATGGGTCATCTTCATTCTTCAAATTTTAGAACTGTCTTGCCCCAAGTTTCCAAATGGAGATCAACTAAACATGCACAATTGGGAGTGGTTAATGAGTGGGTCGAGGTGGGCTCAACCGATGTAGAACTGGCCCCATCATTTTCCCTCTCCTCTCTTCCTTGTTCAGCGCCACATCCCTCCTATGACCATCTTCGGCGACCACCTCGACGCGACGCTTGCATCTCTGATCGTCCTTTAGCAACGCTAGCGAGCGACGGGCTCTCTCCCTCTCGCCTCTGGTGCGAGCAGCAACACACGAACGTTCTGGCGATTGGAAATTTCCGACCAGCGGCGACCCGATCCACGGCACCCACGCTCTTCTGCGATCGATCTCCTCCCTCTCTTACGGTGGCGACAAAGCTGTGGAAGCTAACAATTGAGTGA

Coding sequence (CDS)

ATGGGTCATCTTCATTCTTCAAATTTTAGAACTGTCTTGCCCCAAGTTTCCAAATGGAGATCAACTAAACATGCACAATTGGGAGTGGTTAATGAGTGGGTCGAGGTGGGCTCAACCGATGTAGAACTGGCCCCATCATTTTCCCTCTCCTCTCTTCCTTGTTCAGCGCCACATCCCTCCTATGACCATCTTCGGCGACCACCTCGACGCGACGCTTGCATCTCTGATCGTCCTTTAGCAACGCTAGCGAGCGACGGGCTCTCTCCCTCTCGCCTCTGGTGCGAGCAGCAACACACGAACGTTCTGGCGATTGGAAATTTCCGACCAGCGGCGACCCGATCCACGGCACCCACGCTCTTCTGCGATCGATCTCCTCCCTCTCTTACGGTGGCGACAAAGCTGTGGAAGCTAACAATTGAGTGA

Protein sequence

MGHLHSSNFRTVLPQVSKWRSTKHAQLGVVNEWVEVGSTDVELAPSFSLSSLPCSAPHPSYDHLRRPPRRDACISDRPLATLASDGLSPSRLWCEQQHTNVLAIGNFRPAATRSTAPTLFCDRSPPSLTVATKLWKLTIE
Homology
[Close]
BLAST of CmaCh20G011480 vs. NCBI nr
Match: KAG7011187.1 (hypothetical protein SDJN02_27985, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 83  ASDGLSPSRLWCEQQHTNVLAIGNFRPAATRSTAPTLFCDRSPPSLTV 131
           ASDGLSPSRLWCEQQHTNVLAIGNFRPAATRSTAPTLFCDRSPPSLTV
Sbjct: 14  ASDGLSPSRLWCEQQHTNVLAIGNFRPAATRSTAPTLFCDRSPPSLTV 61

The following BLAST results are available for this feature:
BLAST of CmaCh20G011480 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G011480 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G011480 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011187.11.8e-18100.00hypothetical protein SDJN02_27985, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh20G011480 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G011480.1CmaCh20G011480.1mRNA