CmaCh17G013340.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G013340.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Poly(A)-specific ribonuclease PARN-like
Location	Cma_Chr17: 8970791 .. 8976109 (-)
Sequence length	1953
RNA-Seq Expression	CmaCh17G013340.1
Synteny	CmaCh17G013340.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAGTAATACTCGTTTGGGCACTTCCACCGTGAATTTTGAATGAGAGCGTAACGGGAAACTATGGCGTCTCGGTTCTCATCTCTCCAGTTGCAGAGACGCCGCCTGCATATTGCCACCAATCAACTAAGCGTTAGGCAAATTCGCAACTCCGACTTCTATGGCTGCTTGGGGGACCTGAAGAACCACATCTCCGACTCCGACTTCATCGCCCTCTCTTTGCAGAACACCGGCTCTTCTTCCTTTCCTTGGCACCGCCTTCAGTCCTTCGACACCTACGATACCGCCTATTGCAAGGCCAAGTACGCCGCCGAGAAGTTTCAGATCCTTCAATTCGCTCTATGCCCCTTCTCTGTTAGGGAATCCAAGCTAATCGCCCATCCGTAAGTCCCGCCGCCGCTTCTCTTCGTTTGTACGTTGGGGCGGGGGTCGGGGATTGGGAGTTTCTTTATGTTACTGATTTCATTTTTCTTTACTTTGTATGGATTTGGATGCTTCTTGATACGTAGTAGATGTTGAAAGCGATGGAAATTAGAATTGAACGACATTTCTTTCATTGGAATCTAGAGTAGGGATATGTAGTAAATCTTTTTCATTATTGTCATATGGGTAGAATTTGTAATGGAAGGTGGTAACGGGAAATTTGATGGCTTCTGGCTGATGTTTCGACAATGGTTTTTACTTATGGGTTGCCTGTTCATCATTATTTGAAATTCTAAACTCGAGGTCTCTTGTTTGATGAGTGATACAAATTTGATTGCTTATAATTATTTTGCATGATACATGCCTTCCTGTTACTTGCATCTTAGGTCATGGCAGTACCATCTGTAATTCGTGTTTTTTGCCTGTGAATTACGGCTGCAGATCAAAGCACTAGCGTTCTATTTCATGTGTTTCCCTGCCGTCACTGATCAGCTACGTTTCCTTCAATGGTATAGGTACAACTTTCATTTGTTCCCCAGAGATGATCTGAACATTGGGATGCCTTCTTACAGTTTTTCATGTCAAGTTTCACATCTAACATCCATGGCTCATGAAGGTTTTGACTTTGATGCTTGCATATATGATGGTAAGCCTTATTGTGGACTATTTACTTCGGTTTCTCACTCACTGACCTCAAGACTTGAGATTTGCGACAGACACCATAGCTAGTTATAGAAGAGTAATTTTGCAACCCAGATTTCCAGTCTCTAAACCACCTTCGTTGTAAGGTTTCAACAAGAGCAAAGGATGATTTTGAGTGGAATTCACAGGAAAGAAAAAAAATCCATAATTTATTTCTCAATCTCACTGTCTCTTGAAGTTCTGTTTCCATTATCCAGCTCAAGAGAAGAAATTAAGTTCCCAAGTCTCTAAAACTAAGTTCCCAAGCTAGGTAGAAAAAAATGCTGAAAAGGCGACCCAACGCTTCCAAAAAATCATCTCTCCCTATATCTAGAAGGGTTATACACACCCATCTTGTTTTGGGATTCATATGGCTCATATAGAAATTATACAATTGAACGCCAGCCTTACAAATTTTTATTAGTGGATTGCTGAAGACCTTTTTGTTTCTGGTAATTTTTATCAACCTAAAAATTATTTATCGCTTTCTGGCTGTTTTGCCGCTTGATTTTTGGGAAAAATTAAATTGAATATTGTTTATACTGAATCTATCATCTGATACTGTAGTTTGACTTTTAATAGTCTTTCTCCTCTTGTTGGTTTCAGGCATATCATACTTATCTAGAGCTCAAGAGTCCATAGCAAAAGTTCGAATAGGCCGTCCGATTCTAACACCTAGTACTTATGATGTGAAATCTTCTTCTAGACAGACAATTGCTGATTCAGTTTTTGTTCAACGGGTTAAATCACGGGTAAAGAACTGGAAAGATGCATGTAATTCAAGCACAAAAACAAATGGTAAGTTACGGCCTACTATTGCTTTCTAAAACAATTTCTTCATGGTCTTTTCTTTCCACTCTTTTTTTTCCATTTTGCGGTCACATTTTAAAAATATTTTGGTTAACGAACACTTTTGGTCCTTGAACTTTTATCTAAGTAATAATCCCTGAACCTTAGTTTGAAATGATTTGATCCATATTATTTCGAACTTGTAAAAATTTAGTCCTTGAACTCTAGCATACAACAACTCATTCCCTATATTGTGCTTTAAATTTTCTCTATCATGAAAAATATTGTTAAAATTTATTGAGTTTTCTTCCCTCTGTAGATTTTGATATTGTTAACAAATATGTTCATAAACTATAGAGAATAATTGTTTCCTAATAAAAATTAACATTTAATTTGATGAGATTTTTGTAGTAGGTGTTAAATTGTTACAACCTAAAGTCCAAGAATTAAATCCTTACTTTTATGGAAGGTTGTGGACTAAAAGTGTTTTTTAACCTCTTTTTATTTCCATGTCTCCTGAAATAGTAAAGGTAATGTTTCCATAATATAGACGCTCTGCTAAGTTCGTTGAAAAAGCTCATCATTGGCAGCGAGGAGTATGGATCAAGACCATCCATGACTATAGATGTTTGTAGTGAACGTCAAGTTCTACTTGTTTTAGAGGTAACTTGATCTTTTCATCTTATGATTGATTTTTAAATGTGTATTGCTGTTCTTAAAATATAGTAATTTATCATGTACATCGTAGACTTCCAGAACCCTTCCAGAGCAAACTCATTATGGTATTTCATACAAAAGTGCATCTTTTTGCTGGGCAGTAGCTAAAACATGATAAATAATGGATCTCTGGTATTTTTCTTGCGTAAGCTAAGAATTATAGATCATTGTTCATTTTTATTTATGTTCTTATTTTTAGTAACTTTACATATATATTGCACACTGTTTAAATATGATAGCTTATCATGTGTGTTATACATAATTTAAGGTAAAATTACTGATTTAGTAAGTCGACTTTTATGATTGTCTATTGAATGACTTGACTTCAAAGTTTTATGGTTCTGAGATGACTAAATTTAAGAGTGAGTATAGGAATTCAAATTTAACCTCAGTGTTATCTTTTTTAAATGTGGTAGTGATCTAGACTCCTGCCAGCAGAACAATGTACTTATCTTTGCTACTTTTTCTGTAGAGAGAGTTTATATGTAGACTTATATTCTTTTTTCTATTTGATGTAGCTGTTGAGTGAGTTTTCTGATGACCTGGTTCCTGTAGTAATTCCAACTAAGGGTGGAGGAACTCAAGCAATTCGTGCCATTTGGACAAGCTCAAAAGAAGACAAGATTCTGCTTGAGGTACCAGTACATATTTCACTGGATTTCCACTTTCTAAGTTCCTAAACTATTGATTCTTTAGCTAGCTCTTTGAAGAAGTTTATGTACTTCAGTTGATTTTTTTCATCATTTTCAACCCACCTATCCAATGCATAATTAAAAATGTCTTATTTTTTAAAACTAAGATGAAGAAATGGTTCGTAATGGAAATAAGGTTTTAATTTCCAAAAAATTGAAAGTTTGTGCTTCGATGTATTAGACTGATGGGTTAACTGAATGATATTTTGTTGACTGTTCAGAAGGAGCTTCAAAATCTTGAAGAGGAAGAAAACAAGAAATTTCGTGGTTTTCGAGAGGTGGTAGATATCATTTCTGCTTCACAGAAGCCTATCGTCTCCTACAATTCTCTTAATGGTGTTTATCTCATATATTCTTTATTTTTTGTTGATCTCTTTGCTTTATTTTTCTTTTGTTCTCTAGTTTTTATTCTAATGCTTTCTTTTTGGATGCAGATTTTGCATTTGTTCATTCTAAATTCCTTGCTCCCCTTCCTACTGGCATAGATGAGTTTGCGTCCTCTTTGCATTTGGTTTTCCCGAGAGTGCTCGATGTAAAGCATTTGATCAGCAAGATCGGTGGCCTCAGCAAGCCGACCAGTATAGCTTCAGCTCTTTCTTACTTGAAGAATCATTATTTTGCACCTATTGATTTGGACATTCCAGTTGAAGGTTTGTCACCTTGTCCACATATTTTTTTTACTTGGTTAAATTATAAGTTTAGTACCTCATGTGTCTATTTGGTCCCTACGCTTTTTAATTTTTTGTCCAACAGGTCCCTAAACTTTTACTCTAATCTAGAAGGTACCTAACAAATTTGAAATTTAAAAAAATTAATTGATCATATAAATTAGGAACTTTATGTCTAATGAAACTCTGAACTTTCGATTTTGTATTTCTTAGATACGTGGATTTTGAAAAATATCAAAGTTTAGGGACCAAGTTTGTCGTTTGGAAAGTTCAATAACCAAATAGAAACAAACCTCAATTAAATTTGTAAGTTGAACTACTTTTTTCATGTTTTCATTCATTTCTTCACGGTTATACATCATTAAACCTTTTGTTATGCTTCAGTTTTTATTCTGTTTTGTTATGAGTTCTTTAATTTTAATTTTTAAATGTCGTTTGTCTTACCAATCCATGAAAGGAAACCTGTCAATGTTTTATCTTTATCTATTTTATAGTTTCAAGCCCTGCATCTCTAAGAGCACTGATCATGGTCATGATCCCCTCGAGCAGAAATCTTAATTGTGTTCTATTGCAGCTACAGGAAATGATCGCAAGTTTCATGGGCATAACGCTATACTGGTATGCCATTTGTTTGCAAAAGCCTGCTCTGTACTTAAAATTGATCTTGGTGGCGTCCAATCCAACAATTGTTTGGCCTCAAAGCTGGATGGGTGTGCAAATGTTTTTGGTTCATTCTCCCCCGACCACCACAAATCTGAGGATGAGGACATCAAGATCTCGACGAAGAACGTTAGAAAGATTAGCTGTAGGCATTTGGTTTTCTTGTGGGGATTTAGAGACGGGATGACTGCTCGGTCGATGAAAACTGCACTTGAAGGATCCCATGAAGTTTTCTGTGAAGAGTTTGATGTCCGGTTCGTGGACAAGAAATGCGCCATCGTCGTATTCTGGCAACCTGGCTTATCCGAGGCTTTCCTTGATGCAATAAACAGTGATGGCATTGTGGGATGTTTAAAAGATATGGTATCTGAAGGCCTAAAAGCAACAGGTTATGAAACTTACAAGAGGGTGTGTAGGTTGGGTTTATGGGAAGCAGATTTAGCGGAGTCCCTGGAGAGAGCCACTTCAGAACACCATCATTCCAGTTTCGAAGCTGATCCCGAAACCGAGCGGTTAGATATCTATTACTCTAATGATTCTATAATTAATTTGGCTGATCTTTGAGACCATTTTAGACATTGCCAAAATGCATATAGCGTAGGCAGTATTGTAGTGATCTTCTTCCTATTTCCCAACTGATATTTGGCACCCATGATGATGAACACCTTGAAGTTTTGGTACATTCCTGA

mRNA sequence

GAGAAGTAATACTCGTTTGGGCACTTCCACCGTGAATTTTGAATGAGAGCGTAACGGGAAACTATGGCGTCTCGGTTCTCATCTCTCCAGTTGCAGAGACGCCGCCTGCATATTGCCACCAATCAACTAAGCGTTAGGCAAATTCGCAACTCCGACTTCTATGGCTGCTTGGGGGACCTGAAGAACCACATCTCCGACTCCGACTTCATCGCCCTCTCTTTGCAGAACACCGGCTCTTCTTCCTTTCCTTGGCACCGCCTTCAGTCCTTCGACACCTACGATACCGCCTATTGCAAGGCCAAGTACGCCGCCGAGAAGTTTCAGATCCTTCAATTCGCTCTATGCCCCTTCTCTGTTAGGGAATCCAAGCTAATCGCCCATCCGTACAACTTTCATTTGTTCCCCAGAGATGATCTGAACATTGGGATGCCTTCTTACAGTTTTTCATGTCAAGTTTCACATCTAACATCCATGGCTCATGAAGGTTTTGACTTTGATGCTTGCATATATGATGGCATATCATACTTATCTAGAGCTCAAGAGTCCATAGCAAAAGTTCGAATAGGCCGTCCGATTCTAACACCTAGTACTTATGATGTGAAATCTTCTTCTAGACAGACAATTGCTGATTCAGTTTTTGTTCAACGGGTTAAATCACGGGTAAAGAACTGGAAAGATGCATGTAATTCAAGCACAAAAACAAATGACGCTCTGCTAAGTTCGTTGAAAAAGCTCATCATTGGCAGCGAGGAGTATGGATCAAGACCATCCATGACTATAGATGTTTGTAGTGAACGTCAAGTTCTACTTGTTTTAGAGCTGTTGAGTGAGTTTTCTGATGACCTGGTTCCTGTAGTAATTCCAACTAAGGGTGGAGGAACTCAAGCAATTCGTGCCATTTGGACAAGCTCAAAAGAAGACAAGATTCTGCTTGAGAAGGAGCTTCAAAATCTTGAAGAGGAAGAAAACAAGAAATTTCGTGGTTTTCGAGAGGTGGTAGATATCATTTCTGCTTCACAGAAGCCTATCGTCTCCTACAATTCTCTTAATGATTTTGCATTTGTTCATTCTAAATTCCTTGCTCCCCTTCCTACTGGCATAGATGAGTTTGCGTCCTCTTTGCATTTGGTTTTCCCGAGAGTGCTCGATGTAAAGCATTTGATCAGCAAGATCGGTGGCCTCAGCAAGCCGACCAGTATAGCTTCAGCTCTTTCTTACTTGAAGAATCATTATTTTGCACCTATTGATTTGGACATTCCAGTTGAAGCTACAGGAAATGATCGCAAGTTTCATGGGCATAACGCTATACTGGTATGCCATTTGTTTGCAAAAGCCTGCTCTGTACTTAAAATTGATCTTGGTGGCGTCCAATCCAACAATTGTTTGGCCTCAAAGCTGGATGGGTGTGCAAATGTTTTTGGTTCATTCTCCCCCGACCACCACAAATCTGAGGATGAGGACATCAAGATCTCGACGAAGAACGTTAGAAAGATTAGCTGTAGGCATTTGGTTTTCTTGTGGGGATTTAGAGACGGGATGACTGCTCGGTCGATGAAAACTGCACTTGAAGGATCCCATGAAGTTTTCTGTGAAGAGTTTGATGTCCGGTTCGTGGACAAGAAATGCGCCATCGTCGTATTCTGGCAACCTGGCTTATCCGAGGCTTTCCTTGATGCAATAAACAGTGATGGCATTGTGGGATGTTTAAAAGATATGGTATCTGAAGGCCTAAAAGCAACAGGTTATGAAACTTACAAGAGGGTGTGTAGGTTGGGTTTATGGGAAGCAGATTTAGCGGAGTCCCTGGAGAGAGCCACTTCAGAACACCATCATTCCAGTTTCGAAGCTGATCCCGAAACCGAGCGGCAGTATTGTAGTGATCTTCTTCCTATTTCCCAACTGATATTTGGCACCCATGATGATGAACACCTTGAAGTTTTGGTACATTCCTGA

Coding sequence (CDS)

ATGGCGTCTCGGTTCTCATCTCTCCAGTTGCAGAGACGCCGCCTGCATATTGCCACCAATCAACTAAGCGTTAGGCAAATTCGCAACTCCGACTTCTATGGCTGCTTGGGGGACCTGAAGAACCACATCTCCGACTCCGACTTCATCGCCCTCTCTTTGCAGAACACCGGCTCTTCTTCCTTTCCTTGGCACCGCCTTCAGTCCTTCGACACCTACGATACCGCCTATTGCAAGGCCAAGTACGCCGCCGAGAAGTTTCAGATCCTTCAATTCGCTCTATGCCCCTTCTCTGTTAGGGAATCCAAGCTAATCGCCCATCCGTACAACTTTCATTTGTTCCCCAGAGATGATCTGAACATTGGGATGCCTTCTTACAGTTTTTCATGTCAAGTTTCACATCTAACATCCATGGCTCATGAAGGTTTTGACTTTGATGCTTGCATATATGATGGCATATCATACTTATCTAGAGCTCAAGAGTCCATAGCAAAAGTTCGAATAGGCCGTCCGATTCTAACACCTAGTACTTATGATGTGAAATCTTCTTCTAGACAGACAATTGCTGATTCAGTTTTTGTTCAACGGGTTAAATCACGGGTAAAGAACTGGAAAGATGCATGTAATTCAAGCACAAAAACAAATGACGCTCTGCTAAGTTCGTTGAAAAAGCTCATCATTGGCAGCGAGGAGTATGGATCAAGACCATCCATGACTATAGATGTTTGTAGTGAACGTCAAGTTCTACTTGTTTTAGAGCTGTTGAGTGAGTTTTCTGATGACCTGGTTCCTGTAGTAATTCCAACTAAGGGTGGAGGAACTCAAGCAATTCGTGCCATTTGGACAAGCTCAAAAGAAGACAAGATTCTGCTTGAGAAGGAGCTTCAAAATCTTGAAGAGGAAGAAAACAAGAAATTTCGTGGTTTTCGAGAGGTGGTAGATATCATTTCTGCTTCACAGAAGCCTATCGTCTCCTACAATTCTCTTAATGATTTTGCATTTGTTCATTCTAAATTCCTTGCTCCCCTTCCTACTGGCATAGATGAGTTTGCGTCCTCTTTGCATTTGGTTTTCCCGAGAGTGCTCGATGTAAAGCATTTGATCAGCAAGATCGGTGGCCTCAGCAAGCCGACCAGTATAGCTTCAGCTCTTTCTTACTTGAAGAATCATTATTTTGCACCTATTGATTTGGACATTCCAGTTGAAGCTACAGGAAATGATCGCAAGTTTCATGGGCATAACGCTATACTGGTATGCCATTTGTTTGCAAAAGCCTGCTCTGTACTTAAAATTGATCTTGGTGGCGTCCAATCCAACAATTGTTTGGCCTCAAAGCTGGATGGGTGTGCAAATGTTTTTGGTTCATTCTCCCCCGACCACCACAAATCTGAGGATGAGGACATCAAGATCTCGACGAAGAACGTTAGAAAGATTAGCTGTAGGCATTTGGTTTTCTTGTGGGGATTTAGAGACGGGATGACTGCTCGGTCGATGAAAACTGCACTTGAAGGATCCCATGAAGTTTTCTGTGAAGAGTTTGATGTCCGGTTCGTGGACAAGAAATGCGCCATCGTCGTATTCTGGCAACCTGGCTTATCCGAGGCTTTCCTTGATGCAATAAACAGTGATGGCATTGTGGGATGTTTAAAAGATATGGTATCTGAAGGCCTAAAAGCAACAGGTTATGAAACTTACAAGAGGGTGTGTAGGTTGGGTTTATGGGAAGCAGATTTAGCGGAGTCCCTGGAGAGAGCCACTTCAGAACACCATCATTCCAGTTTCGAAGCTGATCCCGAAACCGAGCGGCAGTATTGTAGTGATCTTCTTCCTATTTCCCAACTGATATTTGGCACCCATGATGATGAACACCTTGAAGTTTTGGTACATTCCTGA

Protein sequence

MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVKSSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTIDVCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEEENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRVLDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHLFAKACSVLKIDLGGVQSNNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCRHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAINSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETERQYCSDLLPISQLIFGTHDDEHLEVLVHS

Homology

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BLAST of CmaCh17G013340.1 vs. ExPASy Swiss-Prot
Match: Q8W4C3 (Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana OX=3702 GN=At3g25430 PE=2 SV=1)

HSP 1 Score: 614.8 bits (1584), Expect = 1.1e-174
Identity = 314/589 (53.31%), Postives = 432/589 (73.34%), Query Frame = 0


Query: 23  SVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTAYCKAKYA 82
           SV+Q++ S+F+  L +++  I  SDFIALSLQNTGS +  WHR+ + DT  T+Y KAKYA
Sbjct: 25  SVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTSYLKAKYA 84

Query: 83  AEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLTSMAHEGF 142
           AE++QILQFALCPFS++ SKL  HPYNFHLFPRD+L  GMPSYSFSCQ S LT+MA EGF
Sbjct: 85  AERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMAREGF 144

Query: 143 DFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVKSSSRQTIADSVFVQRVKSRVKN 202
           DF+ CIY+GISYLSRAQES +K     PIL  S     SSS  T+AD+VFV R++SRVKN
Sbjct: 145 DFNICIYEGISYLSRAQESASKFLSENPILADSV--TVSSSPATVADTVFVGRIRSRVKN 204

Query: 203 WKDAC-NSSTKT-NDALLSSLKKLIIGSEEYGSRPSMTIDVCSERQVLLVLELLSEFSDD 262
           W+ +C +S +KT +D L+SSL++L++GSE+YGSR  +TIDVCSERQV L+LE+L+EFSDD
Sbjct: 205 WRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQLILEMLTEFSDD 264

Query: 263 LVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEEENKKFRGFREVVDIISASQK 322
           +VP+++ +K  GTQA+R ++ SSKEDK L ++EL++LE+EEN++ RGFREVVD IS+SQK
Sbjct: 265 VVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFREVVDFISSSQK 324

Query: 323 PIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRVLDVKHLISKIGGLSKPTSIA 382
           P+VS N L+DF  +H+KFL PLP+ +D+F+SSL   FP V+D+   + +I  LS  +++ 
Sbjct: 325 PVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKEISPLSNISNLP 384

Query: 383 SALSYLKNHYFAPIDLDI-----PVEATGNDRKFHGHNAILVCHLFAKACSVLKIDLGGV 442
           +A+S L N +FAP+D+++     PV+      + HG NA+++  LFAK C++ K DL  +
Sbjct: 385 AAMSSL-NRFFAPVDVEVANQGCPVK-LDEGHQSHGQNAVMISQLFAKLCTIQKSDLSTI 444

Query: 443 QSN---NCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCRHLVFLWGFRDGM 502
           QSN     LAS  D  AN   S S +   + DE++K+ +KN R++S  +LVF+WG    M
Sbjct: 445 QSNEDFQALAS--DEHANSVTSCSKN---AGDENVKVWSKNSRRVSSENLVFIWGLGKKM 504

Query: 503 TARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAINS-DGIVGCLKDM 562
           TA  +K  L+ SH VF  EFDV+++D+  AI+VFW+ G SE FL A+N+ + + G L++M
Sbjct: 505 TAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQLDGSLREM 564

Query: 563 VSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETE 601
           V+EGL+  GYETYKR CRLG WEADLAESL++A       S + DP+++
Sbjct: 565 VAEGLRGAGYETYKRACRLGFWEADLAESLDKAL-----ESSDTDPDSD 599

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BLAST of CmaCh17G013340.1 vs. ExPASy Swiss-Prot
Match: Q9LG26 (Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana OX=3702 GN=PARN PE=1 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 1.1e-54
Identity = 171/621 (27.54%), Postives = 295/621 (47.50%), Query Frame = 0


Query: 18  ATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTAYC 77
           AT    ++ +  S+F   L DL++ +  +DF+A+ L+ TG +S PW     FD YD  Y 
Sbjct: 32  ATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYL 91

Query: 78  KAKYAAEKFQILQFALCPF--SVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLT 137
           K K +AEKF ++QF +CPF    R    +++P+NF +FPR +L    P++ F CQ + + 
Sbjct: 92  KVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMD 151

Query: 138 SMAHEGFDFDACIYDGISYLSRAQESIAKVRI----GRPILTPSTYDVKSSSRQTIADSV 197
            +A   FDF+ CI++GISYLSR +E  A  R+    G   +  S+ + +      +AD +
Sbjct: 152 FLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGI-DSSGETEELKLVRLADVL 211

Query: 198 FVQRVKSRVKNWKDAC--NSSTKTNDALLSSLKKLIIGSEEYGSRPSMTIDVCSERQVLL 257
           F  R++  +  W+       +  +    +S+     + +  +  RP++++   +  Q+ +
Sbjct: 212 FAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRV 271

Query: 258 VLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQN----LEEEENKKF 317
           +  +L +   DLV +    K   ++ I  ++T S  DK  L KE ++    L E + +  
Sbjct: 272 LNSVLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAKDERKRLAERKIQSA 331

Query: 318 RGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRVLDVKH 377
            GFR+V+D++++ +K IV +N   D A V+SKF+ PLP+  ++F +S++  FP ++D K 
Sbjct: 332 IGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDTKI 391

Query: 378 LISKIGGL-----SKPTSIASALSYL---------KNHYFAPIDLDIPVEA--------T 437
           L++    L        TS++SA S L          +  F    ++I VE          
Sbjct: 392 LLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSNWN 451

Query: 438 GNDRKFHGHNAILVCHLFAKACSVLKIDLGGVQSNNCLA--SKLDGCAN-VFGSFSPDHH 497
              +   G++A +   +FA+AC+ L  D       +  A   KL+   N ++ S++    
Sbjct: 452 AGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWT---- 511

Query: 498 KSEDEDIKISTKN-----VRKISCRHLVFLWGFRDGMTARSMKTALEGSHEVFCEEF--- 557
           + +  D++    N     V K    ++V +W F   + AR +K       E  C+ F   
Sbjct: 512 RGDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKARGIK-------ECICKAFGSA 571

Query: 558 ---DVRFVDKKCAIVVFWQPGLSEAFL----DAINSDGIVGCLKDM--VSEG--LKATGY 583
               V  VD     V+F    L   FL       +SDG V  L  +  + EG    A  Y
Sbjct: 572 SVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADY 631

[Close]

BLAST of CmaCh17G013340.1 vs. ExPASy Swiss-Prot
Match: Q90ZA1 (Poly(A)-specific ribonuclease PARN OS=Xenopus laevis OX=8355 GN=parn PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.0e-24
Identity = 97/380 (25.53%), Postives = 169/380 (44.47%), Query Frame = 0


Query: 26  QIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSSFP--WHRLQSFDTYDTAYCKAKYAA 85
           +I  S+F   L  +   I ++DF+A+  + +G S  P        FDT +  Y K K  +
Sbjct: 2   EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHS 61

Query: 86  EKFQILQFALCPFSV--RESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLTSMAHEG 145
            +F + QF LC F+    E+K +   +NF++FP+   N   P   F CQ S +  +A++G
Sbjct: 62  MEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLANQG 121

Query: 146 FDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVKSSSRQTIADSVFVQRVKSRVK 205
           FDF+    +GI YL++ +E + +            Y+ + S     +   ++    S+  
Sbjct: 122 FDFNKVFRNGIPYLNQEEERVLR----------DQYEDRRSQSNGASTMSYISPNSSK-- 181

Query: 206 NWKDACNSSTKTNDALLSSLKKLIIGSEEY--GSRPSMTIDVCSERQVLLVLELLSEFSD 265
                  +     D     + K++   E++    + SM ++ C+  Q  L+ + L+    
Sbjct: 182 -------TPVSIPDEQKGFIDKVVERVEDFLKNEQKSMNVEPCTGYQRKLIYQTLNWKYP 241

Query: 266 DLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEEENKKFRGFREVVDIISASQ 325
             + V    +    +    I    +E++  +E++ Q  E EE     GF  ++  IS+S 
Sbjct: 242 RGIHVE-TVESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAVGFSRIIQAISSSG 301

Query: 326 KPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRVLDVKHLIS--KIGGLSKPT 385
           K +V +N L D      +F   LP  ++EF    + VFPRVLD K + S      +   T
Sbjct: 302 KLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTNPFKEIIYNT 360

Query: 386 SIASALSYLKNHYFAPIDLD 398
           S+A     LK   F P  +D
Sbjct: 362 SLAELEKRLKEAPFKPPKVD 360

[Close]

BLAST of CmaCh17G013340.1 vs. ExPASy Swiss-Prot
Match: O95453 (Poly(A)-specific ribonuclease PARN OS=Homo sapiens OX=9606 GN=PARN PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.9e-21
Identity = 98/375 (26.13%), Postives = 160/375 (42.67%), Query Frame = 0


Query: 26  QIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSSFP--WHRLQSFDTYDTAYCKAKYAA 85
           +I  S+F   L  +   I ++DF A+  + +G S  P        FDT +  Y K K  +
Sbjct: 2   EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61

Query: 86  EKFQILQFALCPF--SVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLTSMAHEG 145
             F + QF LC F     +SK I   +NF++FP+   N   P   F CQ S +  +A +G
Sbjct: 62  MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 121

Query: 146 FDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVKSSSRQTIADSVFVQRVKSRVK 205
           FDF+    +GI YL++ +E   +            YD K S         +V    S+  
Sbjct: 122 FDFNKVFRNGIPYLNQEEERQLR----------EQYDEKRSQANGAGALSYVSPNTSKCP 181

Query: 206 NWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTIDVCSERQVLLVLELLS-EFSDD 265
                     K  D ++  ++ L+   E      ++ ++ C+  Q  L+ + LS ++   
Sbjct: 182 --VTIPEDQKKFIDQVVEKIEDLLQSEE----NKNLDLEPCTGFQRKLIYQTLSWKYPKG 241

Query: 266 LVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEEENKKFRGFREVVDIISASQK 325
           +    + T+    +    I    +E++   E++    E+EE     GF  V+  I+ S K
Sbjct: 242 IHVETLETE--KKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGK 301

Query: 326 PIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRVLDVKHLIS--KIGGLSKPTS 385
            ++ +N L D      +F  PLP  + EF      VFPR+LD K + S      +   TS
Sbjct: 302 LVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTS 357

Query: 386 IASALSYLKNHYFAP 394
           +A     LK   F P
Sbjct: 362 LAELEKRLKETPFNP 357

[Close]

BLAST of CmaCh17G013340.1 vs. ExPASy Swiss-Prot
Match: P69341 (Poly(A)-specific ribonuclease PARN OS=Bos taurus OX=9913 GN=PARN PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 6.4e-21
Identity = 97/375 (25.87%), Postives = 161/375 (42.93%), Query Frame = 0


Query: 26  QIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSSFP--WHRLQSFDTYDTAYCKAKYAA 85
           +I  S+F   L  +   I ++DF A+  + +G S  P        FDT +  Y K K  +
Sbjct: 2   EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61

Query: 86  EKFQILQFALCPF--SVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLTSMAHEG 145
             F + QF LC F     +SK I   +NF++FP+   N   P   F CQ S +  +A +G
Sbjct: 62  MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 121

Query: 146 FDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVKSSSRQTIADSVFVQRVKSRVK 205
           FDF+    +GI YL++ +E   +            YD K S         +     S+  
Sbjct: 122 FDFNKVFRNGIPYLNQEEERQLR----------EQYDEKRSQSNGAGALSYTSPNTSKCP 181

Query: 206 NWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTIDVCSERQVLLVLELLS-EFSDD 265
                 +   K  D ++  ++ L+   E      ++ ++ C+  Q  L+ + LS ++   
Sbjct: 182 --VTIPDDQKKFIDQVVEKIEDLLQSEE----NKNLDLEPCTGFQRKLIYQTLSWKYPKG 241

Query: 266 LVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEEENKKFRGFREVVDIISASQK 325
           +    + T+    +    I    +E++   E++    E+EE     GF  V+  I+ S K
Sbjct: 242 IHVETLETE--KKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGK 301

Query: 326 PIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRVLDVKHLIS--KIGGLSKPTS 385
            ++ +N L D      +F  PLP  ++EF      VFPR+LD K + S      +   TS
Sbjct: 302 LVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTS 357

Query: 386 IASALSYLKNHYFAP 394
           +A     LK   F P
Sbjct: 362 LAELEKRLKETPFNP 357

[Close]

BLAST of CmaCh17G013340.1 vs. ExPASy TrEMBL
Match: A0A6J1JW45 (poly(A)-specific ribonuclease PARN-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488047 PE=3 SV=1)

HSP 1 Score: 1209.9 bits (3129), Expect = 0.0e+00
Identity = 601/601 (100.00%), Postives = 601/601 (100.00%), Query Frame = 0


Query: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS
Sbjct: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180
           GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK
Sbjct: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180

Query: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240
           SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID
Sbjct: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240

Query: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300
           VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE
Sbjct: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300

Query: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360
           ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV
Sbjct: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360

Query: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420
           LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL
Sbjct: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420

Query: 421 FAKACSVLKIDLGGVQSNNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCR 480
           FAKACSVLKIDLGGVQSNNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCR
Sbjct: 421 FAKACSVLKIDLGGVQSNNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCR 480

Query: 481 HLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAIN 540
           HLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAIN
Sbjct: 481 HLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAIN 540

Query: 541 SDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETE 600
           SDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETE
Sbjct: 541 SDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETE 600

Query: 601 R 602
           R
Sbjct: 601 R 601

[Close]

BLAST of CmaCh17G013340.1 vs. ExPASy TrEMBL
Match: A0A6J1GP80 (poly(A)-specific ribonuclease PARN-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456191 PE=3 SV=1)

HSP 1 Score: 1164.8 bits (3012), Expect = 0.0e+00
Identity = 580/602 (96.35%), Postives = 591/602 (98.17%), Query Frame = 0


Query: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFSSL+LQRRRLH ATNQLSVRQIRN+DFYGCLGDLKNHISDSDFIALSLQNTGSSS
Sbjct: 1   MASRFSSLRLQRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180
           GMPSYSFSCQVSHLTSMA EGFDFDACIYDGISYLSRAQESIAKVRIGR  LTPSTY VK
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRIGRSFLTPSTYAVK 180

Query: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240
           SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSE+YGSRPSMTID
Sbjct: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240

Query: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300
           VCSERQVLLVLELLSEFSDDLVPVV P KGGGTQAIRAI TSSKEDKILLEKELQNLEEE
Sbjct: 241 VCSERQVLLVLELLSEFSDDLVPVVNPAKGGGTQAIRAILTSSKEDKILLEKELQNLEEE 300

Query: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360
           ENKKFRGFREVVDIISASQKPI+SYNSLNDFAF+HSKFLAPLPTG+DEFASSLHLVFPRV
Sbjct: 301 ENKKFRGFREVVDIISASQKPILSYNSLNDFAFIHSKFLAPLPTGMDEFASSLHLVFPRV 360

Query: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420
           LDVKHLISKIGGLSKP SIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAIL+CHL
Sbjct: 361 LDVKHLISKIGGLSKPISIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILLCHL 420

Query: 421 FAKACSVLKIDLGGVQS-NNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISC 480
           FAKACSVLKIDLGGVQS NNCLASKLDGCANVFGSFSPDHH+SEDEDIKISTKNVRK+SC
Sbjct: 421 FAKACSVLKIDLGGVQSNNNCLASKLDGCANVFGSFSPDHHESEDEDIKISTKNVRKVSC 480

Query: 481 RHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI 540
           RHLVFLWGFRDGMTA+SMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI
Sbjct: 481 RHLVFLWGFRDGMTAQSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI 540

Query: 541 NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPET 600
           NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERA+SE HHSSFEADPET
Sbjct: 541 NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERASSEQHHSSFEADPET 600

Query: 601 ER 602
           ER
Sbjct: 601 ER 602

[Close]

BLAST of CmaCh17G013340.1 vs. ExPASy TrEMBL
Match: A0A6J1JUS9 (poly(A)-specific ribonuclease PARN-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488047 PE=3 SV=1)

HSP 1 Score: 1093.6 bits (2827), Expect = 0.0e+00
Identity = 551/601 (91.68%), Postives = 551/601 (91.68%), Query Frame = 0


Query: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS
Sbjct: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180
           GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK
Sbjct: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180

Query: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240
           SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTN                          
Sbjct: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTN-------------------------- 240

Query: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300
                                   VIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE
Sbjct: 241 ------------------------VIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300

Query: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360
           ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV
Sbjct: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360

Query: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420
           LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL
Sbjct: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420

Query: 421 FAKACSVLKIDLGGVQSNNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCR 480
           FAKACSVLKIDLGGVQSNNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCR
Sbjct: 421 FAKACSVLKIDLGGVQSNNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCR 480

Query: 481 HLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAIN 540
           HLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAIN
Sbjct: 481 HLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAIN 540

Query: 541 SDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETE 600
           SDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETE
Sbjct: 541 SDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETE 551

Query: 601 R 602
           R
Sbjct: 601 R 551

[Close]

BLAST of CmaCh17G013340.1 vs. ExPASy TrEMBL
Match: A0A6J1GQJ8 (poly(A)-specific ribonuclease PARN-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456191 PE=3 SV=1)

HSP 1 Score: 1049.7 bits (2713), Expect = 5.0e-303
Identity = 531/602 (88.21%), Postives = 541/602 (89.87%), Query Frame = 0


Query: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFSSL+LQRRRLH ATNQLSVRQIRN+DFYGCLGDLKNHISDSDFIALSLQNTGSSS
Sbjct: 1   MASRFSSLRLQRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180
           GMPSYSFSCQVSHLTSMA EGFDFDACIYDGISYLSRAQESIAKVRIGR  LTPSTY VK
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRIGRSFLTPSTYAVK 180

Query: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240
           SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTN                          
Sbjct: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTN-------------------------- 240

Query: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300
                                   V P KGGGTQAIRAI TSSKEDKILLEKELQNLEEE
Sbjct: 241 ------------------------VNPAKGGGTQAIRAILTSSKEDKILLEKELQNLEEE 300

Query: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360
           ENKKFRGFREVVDIISASQKPI+SYNSLNDFAF+HSKFLAPLPTG+DEFASSLHLVFPRV
Sbjct: 301 ENKKFRGFREVVDIISASQKPILSYNSLNDFAFIHSKFLAPLPTGMDEFASSLHLVFPRV 360

Query: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420
           LDVKHLISKIGGLSKP SIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAIL+CHL
Sbjct: 361 LDVKHLISKIGGLSKPISIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILLCHL 420

Query: 421 FAKACSVLKIDLGGVQS-NNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISC 480
           FAKACSVLKIDLGGVQS NNCLASKLDGCANVFGSFSPDHH+SEDEDIKISTKNVRK+SC
Sbjct: 421 FAKACSVLKIDLGGVQSNNNCLASKLDGCANVFGSFSPDHHESEDEDIKISTKNVRKVSC 480

Query: 481 RHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI 540
           RHLVFLWGFRDGMTA+SMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI
Sbjct: 481 RHLVFLWGFRDGMTAQSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI 540

Query: 541 NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPET 600
           NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERA+SE HHSSFEADPET
Sbjct: 541 NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERASSEQHHSSFEADPET 552

Query: 601 ER 602
           ER
Sbjct: 601 ER 552

[Close]

BLAST of CmaCh17G013340.1 vs. ExPASy TrEMBL
Match: A0A6J1CPR7 (poly(A)-specific ribonuclease PARN-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013450 PE=3 SV=1)

HSP 1 Score: 977.2 bits (2525), Expect = 3.1e-281
Identity = 496/604 (82.12%), Postives = 532/604 (88.08%), Query Frame = 0


Query: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASR SSL    RRL+   NQ SVRQ+R SDF+GCLGDL  HIS SDFIALSLQ TGSSS
Sbjct: 1   MASRSSSLHF-HRRLYSTFNQWSVRQVRKSDFHGCLGDLDGHISASDFIALSLQKTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHRLQ FDT  TAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRD+LNI
Sbjct: 61  FPWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180
           GMPSYSFSCQVSHLTSMA EGFDFDACIYDGISYLSRAQESIAKVR+G P  T STY +K
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTTSTYVLK 180

Query: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240
           SSSRQ+IADSVF+QRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSE+YGSRPSMTID
Sbjct: 181 SSSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240

Query: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300
           VCSERQVLLVLELLS+FSDDLVPVVIP KGGGTQAIRAI TSSK+DKILLEKELQNLEEE
Sbjct: 241 VCSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAIRAILTSSKDDKILLEKELQNLEEE 300

Query: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360
           ENK+FRGFREV+D+ISASQKPIVSY SLNDF F+HSKFLAPLP  IDEF+ SLH VFP+V
Sbjct: 301 ENKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPPRIDEFSDSLHSVFPQV 360

Query: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420
           LDV+HL+  I GL+KPTSI+SALSYLKNHYFAP+DLDIPVE TGN+RKFHGHNAI +CHL
Sbjct: 361 LDVQHLMRNISGLNKPTSISSALSYLKNHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHL 420

Query: 421 FAKACSVLKIDLGGVQSN-NCLASKLDGCANVFGSFSPDHHKSED--EDIKISTKNVRKI 480
           F K CSVLKIDL GVQ N   LAS L+GCANVF SF P + + ED  ED+KIST+NVRK+
Sbjct: 421 FTKVCSVLKIDLSGVQFNEKPLASNLEGCANVFASFPPCNQEPEDEGEDVKISTRNVRKV 480

Query: 481 SCRHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLD 540
           SC  LVFLWGFRDGMTA  +K AL+GSHEV CEEFDVRFV KKCAI+VFWQPGLSE FLD
Sbjct: 481 SCGQLVFLWGFRDGMTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLD 540

Query: 541 AINSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADP 600
           AI+SDGI+G LKDMVSEGL+A  YETYKRVCRLG WEADLAESLERATS       EAD 
Sbjct: 541 AIHSDGILGSLKDMVSEGLRAASYETYKRVCRLGHWEADLAESLERATS-------EADC 596

Query: 601 ETER 602
           ET R
Sbjct: 601 ETAR 596

[Close]

BLAST of CmaCh17G013340.1 vs. NCBI nr
Match: XP_022991403.1 (poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 1209.9 bits (3129), Expect = 0.0e+00
Identity = 601/601 (100.00%), Postives = 601/601 (100.00%), Query Frame = 0


Query: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS
Sbjct: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180
           GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK
Sbjct: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180

Query: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240
           SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID
Sbjct: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240

Query: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300
           VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE
Sbjct: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300

Query: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360
           ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV
Sbjct: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360

Query: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420
           LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL
Sbjct: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420

Query: 421 FAKACSVLKIDLGGVQSNNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCR 480
           FAKACSVLKIDLGGVQSNNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCR
Sbjct: 421 FAKACSVLKIDLGGVQSNNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCR 480

Query: 481 HLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAIN 540
           HLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAIN
Sbjct: 481 HLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAIN 540

Query: 541 SDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETE 600
           SDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETE
Sbjct: 541 SDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETE 600

Query: 601 R 602
           R
Sbjct: 601 R 601

[Close]

BLAST of CmaCh17G013340.1 vs. NCBI nr
Match: XP_023547854.1 (poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1167.5 bits (3019), Expect = 0.0e+00
Identity = 580/602 (96.35%), Postives = 592/602 (98.34%), Query Frame = 0


Query: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFSSLQLQRRRLH ATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS
Sbjct: 1   MASRFSSLQLQRRRLHTATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180
           GMPSYSFSCQVSHLTSMA EGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTY VK
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYAVK 180

Query: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240
           SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSE+YGSRPSMTID
Sbjct: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240

Query: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300
           VCSERQVLLVLELLSEFSDDLVPVVIP KGGGTQAIRAI TSSKEDKILLEKELQNLE+E
Sbjct: 241 VCSERQVLLVLELLSEFSDDLVPVVIPAKGGGTQAIRAILTSSKEDKILLEKELQNLEDE 300

Query: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360
           ENKKFRGFREVVD+ISASQKPI+SYNSLNDFAF+HSKFLAPLPTGIDEFASSLHLVFPRV
Sbjct: 301 ENKKFRGFREVVDMISASQKPILSYNSLNDFAFIHSKFLAPLPTGIDEFASSLHLVFPRV 360

Query: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420
           LDVKHLISKIGGLSKP SIASALSYLKNHYFAPIDLDIP+EATGNDRKFHGHNAIL+CHL
Sbjct: 361 LDVKHLISKIGGLSKPISIASALSYLKNHYFAPIDLDIPLEATGNDRKFHGHNAILLCHL 420

Query: 421 FAKACSVLKIDLGGVQS-NNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISC 480
           FAKACSVLKIDLGG QS NNCLASKLDGCANVFGSFSPDHH+S+D+DIKIS KNVRK+SC
Sbjct: 421 FAKACSVLKIDLGGAQSNNNCLASKLDGCANVFGSFSPDHHESKDDDIKISMKNVRKVSC 480

Query: 481 RHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI 540
           RHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI
Sbjct: 481 RHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI 540

Query: 541 NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPET 600
           NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERA+SE HHSSFEADPET
Sbjct: 541 NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERASSEQHHSSFEADPET 600

Query: 601 ER 602
           ER
Sbjct: 601 ER 602

[Close]

BLAST of CmaCh17G013340.1 vs. NCBI nr
Match: XP_022953758.1 (poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 1164.8 bits (3012), Expect = 0.0e+00
Identity = 580/602 (96.35%), Postives = 591/602 (98.17%), Query Frame = 0


Query: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFSSL+LQRRRLH ATNQLSVRQIRN+DFYGCLGDLKNHISDSDFIALSLQNTGSSS
Sbjct: 1   MASRFSSLRLQRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180
           GMPSYSFSCQVSHLTSMA EGFDFDACIYDGISYLSRAQESIAKVRIGR  LTPSTY VK
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRIGRSFLTPSTYAVK 180

Query: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240
           SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSE+YGSRPSMTID
Sbjct: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240

Query: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300
           VCSERQVLLVLELLSEFSDDLVPVV P KGGGTQAIRAI TSSKEDKILLEKELQNLEEE
Sbjct: 241 VCSERQVLLVLELLSEFSDDLVPVVNPAKGGGTQAIRAILTSSKEDKILLEKELQNLEEE 300

Query: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360
           ENKKFRGFREVVDIISASQKPI+SYNSLNDFAF+HSKFLAPLPTG+DEFASSLHLVFPRV
Sbjct: 301 ENKKFRGFREVVDIISASQKPILSYNSLNDFAFIHSKFLAPLPTGMDEFASSLHLVFPRV 360

Query: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420
           LDVKHLISKIGGLSKP SIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAIL+CHL
Sbjct: 361 LDVKHLISKIGGLSKPISIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILLCHL 420

Query: 421 FAKACSVLKIDLGGVQS-NNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISC 480
           FAKACSVLKIDLGGVQS NNCLASKLDGCANVFGSFSPDHH+SEDEDIKISTKNVRK+SC
Sbjct: 421 FAKACSVLKIDLGGVQSNNNCLASKLDGCANVFGSFSPDHHESEDEDIKISTKNVRKVSC 480

Query: 481 RHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI 540
           RHLVFLWGFRDGMTA+SMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI
Sbjct: 481 RHLVFLWGFRDGMTAQSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI 540

Query: 541 NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPET 600
           NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERA+SE HHSSFEADPET
Sbjct: 541 NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERASSEQHHSSFEADPET 600

Query: 601 ER 602
           ER
Sbjct: 601 ER 602

[Close]

BLAST of CmaCh17G013340.1 vs. NCBI nr
Match: KAG6576047.1 (Poly(A)-specific ribonuclease PARN-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1164.8 bits (3012), Expect = 0.0e+00
Identity = 579/602 (96.18%), Postives = 591/602 (98.17%), Query Frame = 0


Query: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFSSL+L+RRRLH ATNQLSVRQIRN+DFYGCLGDLKNHISDSDFIALSLQNTGSSS
Sbjct: 1   MASRFSSLRLRRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180
           GMPSYSFSCQVSHLTSMA EGFDFDACIYDGISYLSRAQESIAKVRIGR  LTPSTY VK
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRIGRSFLTPSTYAVK 180

Query: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240
           SS RQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSE+YGSRPSMTID
Sbjct: 181 SSFRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240

Query: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300
           VCSERQVLLVLELLSEFSDDLVPVVIP KGGGTQAIRAI TSSKEDKILLEKELQNLEEE
Sbjct: 241 VCSERQVLLVLELLSEFSDDLVPVVIPAKGGGTQAIRAILTSSKEDKILLEKELQNLEEE 300

Query: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360
           ENKKFRGFREVVDIISASQKPI+SYNSLNDFAF+HSKFLAPLPTG+DEFASSLHLVFPRV
Sbjct: 301 ENKKFRGFREVVDIISASQKPILSYNSLNDFAFIHSKFLAPLPTGMDEFASSLHLVFPRV 360

Query: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420
           LDVKHLISKIGGLSKP SIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAIL+CHL
Sbjct: 361 LDVKHLISKIGGLSKPISIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILLCHL 420

Query: 421 FAKACSVLKIDLGGVQS-NNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISC 480
           FAKACSVLKIDLGGVQS NNCLASKLDGCANVFGSFSPDHH+SEDEDIKISTKN+RK+SC
Sbjct: 421 FAKACSVLKIDLGGVQSNNNCLASKLDGCANVFGSFSPDHHESEDEDIKISTKNIRKVSC 480

Query: 481 RHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI 540
           RHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI
Sbjct: 481 RHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI 540

Query: 541 NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPET 600
           NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERA+SE HHSSFEADPET
Sbjct: 541 NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERASSEQHHSSFEADPET 600

Query: 601 ER 602
           ER
Sbjct: 601 ER 602

[Close]

BLAST of CmaCh17G013340.1 vs. NCBI nr
Match: KAG7014570.1 (Poly(A)-specific ribonuclease PARN-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1162.5 bits (3006), Expect = 0.0e+00
Identity = 579/602 (96.18%), Postives = 590/602 (98.01%), Query Frame = 0


Query: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60
           MASRFSSL+L+RRRLH ATNQLSVRQIRN+DFYGCLGDLKNHISDSDFIALSLQNTGSSS
Sbjct: 1   MASRFSSLRLRRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120
           FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180
           GMPSYSFSCQVSHLTSMA EGFDFDACIYDGISYLSRAQESIAKVRIGR  LTPSTY VK
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRIGRSFLTPSTYAVK 180

Query: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240
           SS RQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSE+YGSRPSMTID
Sbjct: 181 SSFRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240

Query: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300
           VCSERQVLLVLELLSEFSDDLVPVVIP KGGGTQAIRAI TSSKEDKILLEKELQNLEEE
Sbjct: 241 VCSERQVLLVLELLSEFSDDLVPVVIPAKGGGTQAIRAILTSSKEDKILLEKELQNLEEE 300

Query: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360
           ENKKFRGFREVVDIISASQKPI+SYNSLNDFAF+HSKFLAPLPTG+DEFASSLHLVFPRV
Sbjct: 301 ENKKFRGFREVVDIISASQKPILSYNSLNDFAFIHSKFLAPLPTGMDEFASSLHLVFPRV 360

Query: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420
           LDVKHLISKIGGLSKP SIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAIL+CHL
Sbjct: 361 LDVKHLISKIGGLSKPISIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILLCHL 420

Query: 421 FAKACSVLKIDLGGVQS-NNCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISC 480
           FAKACSVLKIDLGGVQS NNCLASKLDGCANVFGSFSPDHH+SED DIKISTKNVRK+SC
Sbjct: 421 FAKACSVLKIDLGGVQSNNNCLASKLDGCANVFGSFSPDHHESEDGDIKISTKNVRKVSC 480

Query: 481 RHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI 540
           RHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI
Sbjct: 481 RHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI 540

Query: 541 NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPET 600
           NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERA+SE HHSSFEADPET
Sbjct: 541 NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERASSEQHHSSFEADPET 600

Query: 601 ER 602
           ER
Sbjct: 601 ER 602

[Close]

BLAST of CmaCh17G013340.1 vs. TAIR 10
Match: AT3G25430.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 614.8 bits (1584), Expect = 7.9e-176
Identity = 314/589 (53.31%), Postives = 432/589 (73.34%), Query Frame = 0


Query: 23  SVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTAYCKAKYA 82
           SV+Q++ S+F+  L +++  I  SDFIALSLQNTGS +  WHR+ + DT  T+Y KAKYA
Sbjct: 25  SVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTSYLKAKYA 84

Query: 83  AEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLTSMAHEGF 142
           AE++QILQFALCPFS++ SKL  HPYNFHLFPRD+L  GMPSYSFSCQ S LT+MA EGF
Sbjct: 85  AERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMAREGF 144

Query: 143 DFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVKSSSRQTIADSVFVQRVKSRVKN 202
           DF+ CIY+GISYLSRAQES +K     PIL  S     SSS  T+AD+VFV R++SRVKN
Sbjct: 145 DFNICIYEGISYLSRAQESASKFLSENPILADSV--TVSSSPATVADTVFVGRIRSRVKN 204

Query: 203 WKDAC-NSSTKT-NDALLSSLKKLIIGSEEYGSRPSMTIDVCSERQVLLVLELLSEFSDD 262
           W+ +C +S +KT +D L+SSL++L++GSE+YGSR  +TIDVCSERQV L+LE+L+EFSDD
Sbjct: 205 WRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQLILEMLTEFSDD 264

Query: 263 LVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEEENKKFRGFREVVDIISASQK 322
           +VP+++ +K  GTQA+R ++ SSKEDK L ++EL++LE+EEN++ RGFREVVD IS+SQK
Sbjct: 265 VVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFREVVDFISSSQK 324

Query: 323 PIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRVLDVKHLISKIGGLSKPTSIA 382
           P+VS N L+DF  +H+KFL PLP+ +D+F+SSL   FP V+D+   + +I  LS  +++ 
Sbjct: 325 PVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKEISPLSNISNLP 384

Query: 383 SALSYLKNHYFAPIDLDI-----PVEATGNDRKFHGHNAILVCHLFAKACSVLKIDLGGV 442
           +A+S L N +FAP+D+++     PV+      + HG NA+++  LFAK C++ K DL  +
Sbjct: 385 AAMSSL-NRFFAPVDVEVANQGCPVK-LDEGHQSHGQNAVMISQLFAKLCTIQKSDLSTI 444

Query: 443 QSN---NCLASKLDGCANVFGSFSPDHHKSEDEDIKISTKNVRKISCRHLVFLWGFRDGM 502
           QSN     LAS  D  AN   S S +   + DE++K+ +KN R++S  +LVF+WG    M
Sbjct: 445 QSNEDFQALAS--DEHANSVTSCSKN---AGDENVKVWSKNSRRVSSENLVFIWGLGKKM 504

Query: 503 TARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAINS-DGIVGCLKDM 562
           TA  +K  L+ SH VF  EFDV+++D+  AI+VFW+ G SE FL A+N+ + + G L++M
Sbjct: 505 TAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQLDGSLREM 564

Query: 563 VSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADPETE 601
           V+EGL+  GYETYKR CRLG WEADLAESL++A       S + DP+++
Sbjct: 565 VAEGLRGAGYETYKRACRLGFWEADLAESLDKAL-----ESSDTDPDSD 599

[Close]

BLAST of CmaCh17G013340.1 vs. TAIR 10
Match: AT1G55870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 216.1 bits (549), Expect = 8.2e-56
Identity = 171/621 (27.54%), Postives = 295/621 (47.50%), Query Frame = 0


Query: 18  ATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDTYDTAYC 77
           AT    ++ +  S+F   L DL++ +  +DF+A+ L+ TG +S PW     FD YD  Y 
Sbjct: 32  ATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYL 91

Query: 78  KAKYAAEKFQILQFALCPF--SVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQVSHLT 137
           K K +AEKF ++QF +CPF    R    +++P+NF +FPR +L    P++ F CQ + + 
Sbjct: 92  KVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMD 151

Query: 138 SMAHEGFDFDACIYDGISYLSRAQESIAKVRI----GRPILTPSTYDVKSSSRQTIADSV 197
            +A   FDF+ CI++GISYLSR +E  A  R+    G   +  S+ + +      +AD +
Sbjct: 152 FLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGI-DSSGETEELKLVRLADVL 211

Query: 198 FVQRVKSRVKNWKDAC--NSSTKTNDALLSSLKKLIIGSEEYGSRPSMTIDVCSERQVLL 257
           F  R++  +  W+       +  +    +S+     + +  +  RP++++   +  Q+ +
Sbjct: 212 FAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRV 271

Query: 258 VLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQN----LEEEENKKF 317
           +  +L +   DLV +    K   ++ I  ++T S  DK  L KE ++    L E + +  
Sbjct: 272 LNSVLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAKDERKRLAERKIQSA 331

Query: 318 RGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRVLDVKH 377
            GFR+V+D++++ +K IV +N   D A V+SKF+ PLP+  ++F +S++  FP ++D K 
Sbjct: 332 IGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDTKI 391

Query: 378 LISKIGGL-----SKPTSIASALSYL---------KNHYFAPIDLDIPVEA--------T 437
           L++    L        TS++SA S L          +  F    ++I VE          
Sbjct: 392 LLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSNWN 451

Query: 438 GNDRKFHGHNAILVCHLFAKACSVLKIDLGGVQSNNCLA--SKLDGCAN-VFGSFSPDHH 497
              +   G++A +   +FA+AC+ L  D       +  A   KL+   N ++ S++    
Sbjct: 452 AGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWT---- 511

Query: 498 KSEDEDIKISTKN-----VRKISCRHLVFLWGFRDGMTARSMKTALEGSHEVFCEEF--- 557
           + +  D++    N     V K    ++V +W F   + AR +K       E  C+ F   
Sbjct: 512 RGDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKARGIK-------ECICKAFGSA 571

Query: 558 ---DVRFVDKKCAIVVFWQPGLSEAFL----DAINSDGIVGCLKDM--VSEG--LKATGY 583
               V  VD     V+F    L   FL       +SDG V  L  +  + EG    A  Y
Sbjct: 572 SVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADY 631

[Close]

BLAST of CmaCh17G013340.1 vs. TAIR 10
Match: AT1G55870.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 122.9 bits (307), Expect = 9.4e-28
Identity = 127/500 (25.40%), Postives = 225/500 (45.00%), Query Frame = 0


Query: 137 MAHEGFDFDACIYDGISYLSRAQESIAKVRI----GRPILTPSTYDVKSSSRQTIADSVF 196
           +A   FDF+ CI++GISYLSR +E  A  R+    G   +  S+ + +      +AD +F
Sbjct: 4   LAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGI-DSSGETEELKLVRLADVLF 63

Query: 197 VQRVKSRVKNWKDAC--NSSTKTNDALLSSLKKLIIGSEEYGSRPSMTIDVCSERQVLLV 256
             R++  +  W+       +  +    +S+     + +  +  RP++++   +  Q+ ++
Sbjct: 64  AARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRVL 123

Query: 257 LELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQN----LEEEENKKFR 316
             +L +   DLV +    K   ++ I  ++T S  DK  L KE ++    L E + +   
Sbjct: 124 NSVLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAKDERKRLAERKIQSAI 183

Query: 317 GFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRVLDVKHL 376
           GFR+V+D++++ +K IV +N   D A V+SKF+ PLP+  ++F +S++  FP ++D K L
Sbjct: 184 GFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDTKIL 243

Query: 377 ISKIGGL-----SKPTSIASALSYL---------KNHYFAPIDLDIPVEA--------TG 436
           ++    L        TS++SA S L          +  F    ++I VE           
Sbjct: 244 LNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSNWNA 303

Query: 437 NDRKFHGHNAILVCHLFAKACSVLKIDLGGVQSNNCLA--SKLDGCAN-VFGSFSPDHHK 496
             +   G++A +   +FA+AC+ L  D       +  A   KL+   N ++ S++    +
Sbjct: 304 GGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWT----R 363

Query: 497 SEDEDIKISTKN-----VRKISCRHLVFLWGFRDGMTARSMKTALEGSHEVFCEEF---- 556
            +  D++    N     V K    ++V +W F   + AR +K       E  C+ F    
Sbjct: 364 GDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKARGIK-------ECICKAFGSAS 423

Query: 557 --DVRFVDKKCAIVVFWQPGLSEAFL----DAINSDGIVGCLKDM--VSEG--LKATGYE 583
              V  VD     V+F    L   FL       +SDG V  L  +  + EG    A  YE
Sbjct: 424 VTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYE 483

The following BLAST results are available for this feature:

BLAST of CmaCh17G013340.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W4C3	1.1e-174	53.31	Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana OX=3702 GN=At3g2...	[more]
Q9LG26	1.1e-54	27.54	Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana OX=3702 GN=PARN PE=1 ...	[more]
Q90ZA1	8.0e-24	25.53	Poly(A)-specific ribonuclease PARN OS=Xenopus laevis OX=8355 GN=parn PE=1 SV=1	[more]
O95453	4.9e-21	26.13	Poly(A)-specific ribonuclease PARN OS=Homo sapiens OX=9606 GN=PARN PE=1 SV=1	[more]
P69341	6.4e-21	25.87	Poly(A)-specific ribonuclease PARN OS=Bos taurus OX=9913 GN=PARN PE=1 SV=2	[more]

BLAST of CmaCh17G013340.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JW45	0.0e+00	100.00	poly(A)-specific ribonuclease PARN-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1GP80	0.0e+00	96.35	poly(A)-specific ribonuclease PARN-like isoform X1 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JUS9	0.0e+00	91.68	poly(A)-specific ribonuclease PARN-like isoform X2 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1GQJ8	5.0e-303	88.21	poly(A)-specific ribonuclease PARN-like isoform X2 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1CPR7	3.1e-281	82.12	poly(A)-specific ribonuclease PARN-like isoform X2 OS=Momordica charantia OX=367...	[more]

BLAST of CmaCh17G013340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991403.1	0.0e+00	100.00	poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita maxima]	[more]
XP_023547854.1	0.0e+00	96.35	poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022953758.1	0.0e+00	96.35	poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita moschata]	[more]
KAG6576047.1	0.0e+00	96.18	Poly(A)-specific ribonuclease PARN-like protein, partial [Cucurbita argyrosperma...	[more]
KAG7014570.1	0.0e+00	96.18	Poly(A)-specific ribonuclease PARN-like protein, partial [Cucurbita argyrosperma...	[more]

BLAST of CmaCh17G013340.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25430.1	7.9e-176	53.31	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G55870.1	8.2e-56	27.54	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G55870.2	9.4e-28	25.40	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 280..303
None	No IPR available	PANTHER	PTHR15092	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	coord: 14..595
None	No IPR available	PANTHER	PTHR15092:SF42	POLY(A)-SPECIFIC RIBONUCLEASE PARN-LIKE	coord: 14..595
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 27..392 e-value: 2.0E-59 score: 201.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 26..227 e-value: 1.4E-27 score: 98.6 coord: 277..477 e-value: 8.4E-26 score: 92.7
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 24..431

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh17G013340	CmaCh17G013340	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G013340.1:exon:433	CmaCh17G013340.1:exon:433	exon
CmaCh17G013340.1:exon:432	CmaCh17G013340.1:exon:432	exon
CmaCh17G013340.1:exon:431	CmaCh17G013340.1:exon:431	exon
CmaCh17G013340.1:exon:430	CmaCh17G013340.1:exon:430	exon
CmaCh17G013340.1:exon:429	CmaCh17G013340.1:exon:429	exon
CmaCh17G013340.1:exon:428	CmaCh17G013340.1:exon:428	exon
CmaCh17G013340.1:exon:427	CmaCh17G013340.1:exon:427	exon
CmaCh17G013340.1:exon:426	CmaCh17G013340.1:exon:426	exon
CmaCh17G013340.1:exon:425	CmaCh17G013340.1:exon:425	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G013340.1:cds	CmaCh17G013340.1:cds_9	CDS
CmaCh17G013340.1:cds	CmaCh17G013340.1:cds_8	CDS
CmaCh17G013340.1:cds	CmaCh17G013340.1:cds_7	CDS
CmaCh17G013340.1:cds	CmaCh17G013340.1:cds_6	CDS
CmaCh17G013340.1:cds	CmaCh17G013340.1:cds_5	CDS
CmaCh17G013340.1:cds	CmaCh17G013340.1:cds_4	CDS
CmaCh17G013340.1:cds	CmaCh17G013340.1:cds_3	CDS
CmaCh17G013340.1:cds	CmaCh17G013340.1:cds_2	CDS
CmaCh17G013340.1:cds	CmaCh17G013340.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G013340.1:five_prime_utr	CmaCh17G013340.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh17G013340.1	CmaCh17G013340.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding