CmaCh16G006170.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACCTTGGCAAAGCTGTGTAAAACTGCATTTGATATGCTTATTCTGTGCTGCAAACAAGATTCTGGTGAAGGGTTGATATGTATGCAAGTGTAAGAAGTAGTGTCTATAATGAATTCAGGTATGTACATTTGTTTACTTTAGGGAAGAGTTCAGATATTAAGTAGCTTTTAGCTTATTATTCATTTGGCAGTGTATTGAAACCTACTGATGAAGTCCCTTGGCTTTGAACTCTTAGTGTGTTGTATTGTAAATAACTTTCAGAAGGCTAAATGACCTTTTGTTGGTTTCTTTTTTCTTGTATATTAGCCTCTCTTTGTGTAGATTATATCCTCATTTTAGTTGGGTTATTATATTCTTAGTGAAGTGCGAGTTTATAACTACTTTATAAGGATGTAGAAAACTCTCTTTAACAGATGTGTTTTAAAATCGTGAGGCTAATAGCGATACGTAACGGGCCAAAGTGAACAATATCTGCTGGTGGTTGGTTTAAGTTGTTACAAAGAACATTAGAGCTAGTCACCGAATGGTGTGCTAGTGAGAATGTCGACCCCAAGGGGATGGATTGTGAGATCCCACGGGGCTATTTCCAATAGCTAGTCACCAGGAGGTATGCCAGCGAGGACGTTCGACCCTTAAGGGGGTGGATTGTGTCTCACAAGGCTGTTACAAATGATATCAGAGCTAGTCACCGAACGGTGTGCCAACAAGGACGCTGGACCCCCCATAGGTGGATTGTGAGATCCCACATAGTTGTTACAAATGATATCAGAGTTAGTCATCGGGTGGTGTGCCAACGAGGACACTGGACTGCTAGATTGTAAGATCTCACCATCGATTGGAGAGAGGAACTAAGCATTTCTTATAAAGGTGTGAATATGAAATCGCGAGGTTGACGACGATACGTAATGGTTGAAAAAGACTATTACATATCAATTGATTTTTGTTTTTTATTTTTTAATATTGTTTGTTTGCCTAATTTTTTAAAATAAAAAATAAAAAATAAAAAATAATAGGGAGATAGTTATTAAAGGTGTCTTTTAGTAAGATAATTGTTCAACTCATCTATTTATTTATTTCAAATATTTACAATTTACAATTCAATTTAAATACATATTTTAAAAAATTATCTTCAAAATCGTTAAATTTATATAATATATATATATATATATAATTGTATCAATCAAAACGTGTTTTGTTGGTTGAATCCATTTAGTTTTGAATTTAGGATTTTTAGTTCAAAACGCAAAAACCCCTGTCGTTTAGGGTTTTTTTTTTCATTTTTGTTTGTTTAAGGTGAAATGAATACTATTTCGACATCGGCGCACACATTTCTTCTGCCCATCTTCTCGTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCTACCTCGCCCTCGCCTTCTCCGTCGGTCTCCTTCTCCGCTTCCGGTAAGCTCTCTTTCTCTCTCTGTCGGCCTCTTCTCTTAGTTTCGTTATTTCCTCCTTTCTGATGATTTTTTCGTGCAGTTTCTCCATTATTGTGTTCTTAAGATATTGTATCGAACTGAAATATTATGTACTGAACTCACTCGGGACCTTGATTGAAGAGTTAACATTCTCGTGATGTGTTTTCTTGATTAATTTATCCGACACTGTAGTTTCTTTGGAGCATGATGTTTTTTAGGGCAATTTTAGGCACATCTTGTTTTATGTGATTATGCTGGTGCGGTTGTGATTACTGTTATGCTTTTTATGTGCTTATGGTCGTATCTTTAATGTATTTTCAGCCTAACGCCAAGGACATTGCAGAAGATCTACCTCTAGTTACAAAATGAGGTATTATGTTTTTAGGTTTTTGTATATTTTTTTATGCGCATTTCTTAATCTGCTATTTTTAAATTCATACATACTAATGGCTTTCATGTCCGCCCCCCTTTTGTCTTCAATTGCAGCCGACCAATGGAGGAAGATGTAAGTTCTTTAGTCTTTTATCCTTTCAGTTTCAGTACTTTCATCCAATACATGCTGCCAAATTGGTTCAGTTTTATGTCTTATGCACAAGTGTGAATGAATCTCTTATAATTTATTTGTTTCTTTTAAATATGAAATGTCTGCTATCTTCTTGGTGCTATGGTTGGCAGGAAGCAATATGATTTTTTAAGGCTAGTTTTATACCTGCTGAAGTAAAACTTTGGTTCAATTCTGTATTCTCTTTCCACTTTGTTTTTATGGTTGATTATTGTGATTTTTTTCCCCATCTATTTGATGATTGTTTACCAATTTCTTACTCTTTTGCGTTATCCAAAAGGTTACATTTCTAATAAAAAAAATGATAACTATGACAATTCCATAAAGTTTATTTATTTTAATTTTTTTCAGTAACTATGTAGGTTCTGTTTCTTTTTTATCATATCTAGTGGTAGCTCAACGTTTTCTTTTACTAGGATTTTTTTTTTCAAATCTTTCCAGCCCCCCTTCCCCAGTGTGTTCCTTTGGGGTTTTATTGCAAAATCTTTGGACTTCTGCAATCGTATTCTATTTATATTTTTACTTCCAACTTTACTGTAGTGTTTCTACAAACACCATTAGAGTGTACTTACTTTGAATCCTCTGCAGACTAGCAAAAATGAGGAAGAGGAGTTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCTTTGTTTCTGCGTGTTTAACAGCTGCGCTTTGTAATTAACAGGCAGAACTTTTCAGTTAAAAACTATCTCTATGTGTTGGACCTTTTCGGCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTTTTACTGATGTTTGCTTACTCTTTTTCTTGCTTTGTATAGACTCAAGAGTCACTCATCTTATGTATTATTACTATGACCAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGAATAGTTGGCCATCTCGTAATATGTTCAGTTTGACTTCTTGAGTTGACTTCATATGCATGCCAATCTTATTGTCTTTCTCCCTGTGATAAACATCAAACTTTCATTTGATAGCTTGATCTTCTTCTAAGTTTGGAGCTATCTATATCAGTTTGTACTTCATTTTAATCTCTCTTTTCCTGCGAACCATTTGCCAAATACTGTAACAATAGAAATTGTATCTGTTTAGGTATCAGAGATTACTTAGTAGAAATGCTATATCTGTTTTTAACGTGTGTCTTTTATGGAGTTTTGTCTTTGCAACTTGGGACATCGTTTGTTTTGATCACAAGTGATATCATCATTCAGAATTATGAGATCTTTTGGGCTTGGTAGATCATGTGTTGTTCCTCATGTCTTTTTCCTTTGTTTAACTATGTTCATGTGTACACACCAAGGAATTAAATTTACACTTTCAT ATGACCTTGGCAAAGCTGTGTAAAACTGCATTTGATATGCTTATTCTGTGCTGCAAACAAGATTCTGGTGAAGGGTTGATATGTGAAATGAATACTATTTCGACATCGGCGCACACATTTCTTCTGCCCATCTTCTCGTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCTACCTCGCCCTCGCCTTCTCCGTCGGTCTCCTTCTCCGCTTCCGACTAGCAAAAATGAGGAAGAGGAGTTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGAATAGTTGGCCATCTCGTAATATGTTCAGTTTGACTTCTTGAGTTGACTTCATATGCATGCCAATCTTATTGTCTTTCTCCCTGTGATAAACATCAAACTTTCATTTGATAGCTTGATCTTCTTCTAAGTTTGGAGCTATCTATATCAGTTTGTACTTCATTTTAATCTCTCTTTTCCTGCGAACCATTTGCCAAATACTGTAACAATAGAAATTGTATCTGTTTAGGTATCAGAGATTACTTAGTAGAAATGCTATATCTGTTTTTAACGTGTGTCTTTTATGGAGTTTTGTCTTTGCAACTTGGGACATCGTTTGTTTTGATCACAAGTGATATCATCATTCAGAATTATGAGATCTTTTGGGCTTGGTAGATCATGTGTTGTTCCTCATGTCTTTTTCCTTTGTTTAACTATGTTCATGTGTACACACCAAGGAATTAAATTTACACTTTCAT ATGACCTTGGCAAAGCTGTGTAAAACTGCATTTGATATGCTTATTCTGTGCTGCAAACAAGATTCTGGTGAAGGGTTGATATGTGAAATGAATACTATTTCGACATCGGCGCACACATTTCTTCTGCCCATCTTCTCGTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCTACCTCGCCCTCGCCTTCTCCGTCGGTCTCCTTCTCCGCTTCCGACTAGCAAAAATGAGGAAGAGGAGTTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAGTAA MTLAKLCKTAFDMLILCCKQDSGEGLICEMNTISTSAHTFLLPIFSFDLLRYSSPLRRLPRPRLLRRSPSPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK Homology
BLAST of CmaCh16G006170.1 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 5.0e-45 Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0
BLAST of CmaCh16G006170.1 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 5.0e-45 Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0
BLAST of CmaCh16G006170.1 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 5.0e-45 Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0
BLAST of CmaCh16G006170.1 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.1e-44 Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 0
BLAST of CmaCh16G006170.1 vs. ExPASy Swiss-Prot
Match: Q18786 (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239 GN=snr-4 PE=1 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 7.5e-41 Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 0
BLAST of CmaCh16G006170.1 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49 Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0
BLAST of CmaCh16G006170.1 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49 Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0
BLAST of CmaCh16G006170.1 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49 Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0
BLAST of CmaCh16G006170.1 vs. TAIR 10
Match: AT2G47640.4 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49 Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0
BLAST of CmaCh16G006170.1 vs. TAIR 10
Match: AT3G62840.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49 Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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