CmaCh16G006170 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G006170
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSmall nuclear ribonucleoprotein Sm D2
LocationCma_Chr16: 3190219 .. 3193761 (-)
RNA-Seq ExpressionCmaCh16G006170
SyntenyCmaCh16G006170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTGGCAAAGCTGTGTAAAACTGCATTTGATATGCTTATTCTGTGCTGCAAACAAGATTCTGGTGAAGGGTTGATATGTATGCAAGTGTAAGAAGTAGTGTCTATAATGAATTCAGGTATGTACATTTGTTTACTTTAGGGAAGAGTTCAGATATTAAGTAGCTTTTAGCTTATTATTCATTTGGCAGTGTATTGAAACCTACTGATGAAGTCCCTTGGCTTTGAACTCTTAGTGTGTTGTATTGTAAATAACTTTCAGAAGGCTAAATGACCTTTTGTTGGTTTCTTTTTTCTTGTATATTAGCCTCTCTTTGTGTAGATTATATCCTCATTTTAGTTGGGTTATTATATTCTTAGTGAAGTGCGAGTTTATAACTACTTTATAAGGATGTAGAAAACTCTCTTTAACAGATGTGTTTTAAAATCGTGAGGCTAATAGCGATACGTAACGGGCCAAAGTGAACAATATCTGCTGGTGGTTGGTTTAAGTTGTTACAAAGAACATTAGAGCTAGTCACCGAATGGTGTGCTAGTGAGAATGTCGACCCCAAGGGGATGGATTGTGAGATCCCACGGGGCTATTTCCAATAGCTAGTCACCAGGAGGTATGCCAGCGAGGACGTTCGACCCTTAAGGGGGTGGATTGTGTCTCACAAGGCTGTTACAAATGATATCAGAGCTAGTCACCGAACGGTGTGCCAACAAGGACGCTGGACCCCCCATAGGTGGATTGTGAGATCCCACATAGTTGTTACAAATGATATCAGAGTTAGTCATCGGGTGGTGTGCCAACGAGGACACTGGACTGCTAGATTGTAAGATCTCACCATCGATTGGAGAGAGGAACTAAGCATTTCTTATAAAGGTGTGAATATGAAATCGCGAGGTTGACGACGATACGTAATGGTTGAAAAAGACTATTACATATCAATTGATTTTTGTTTTTTATTTTTTAATATTGTTTGTTTGCCTAATTTTTTAAAATAAAAAATAAAAAATAAAAAATAATAGGGAGATAGTTATTAAAGGTGTCTTTTAGTAAGATAATTGTTCAACTCATCTATTTATTTATTTCAAATATTTACAATTTACAATTCAATTTAAATACATATTTTAAAAAATTATCTTCAAAATCGTTAAATTTATATAATATATATATATATATATAATTGTATCAATCAAAACGTGTTTTGTTGGTTGAATCCATTTAGTTTTGAATTTAGGATTTTTAGTTCAAAACGCAAAAACCCCTGTCGTTTAGGGTTTTTTTTTTCATTTTTGTTTGTTTAAGGTGAAATGAATACTATTTCGACATCGGCGCACACATTTCTTCTGCCCATCTTCTCGTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCTACCTCGCCCTCGCCTTCTCCGTCGGTCTCCTTCTCCGCTTCCGGTAAGCTCTCTTTCTCTCTCTGTCGGCCTCTTCTCTTAGTTTCGTTATTTCCTCCTTTCTGATGATTTTTTCGTGCAGTTTCTCCATTATTGTGTTCTTAAGATATTGTATCGAACTGAAATATTATGTACTGAACTCACTCGGGACCTTGATTGAAGAGTTAACATTCTCGTGATGTGTTTTCTTGATTAATTTATCCGACACTGTAGTTTCTTTGGAGCATGATGTTTTTTAGGGCAATTTTAGGCACATCTTGTTTTATGTGATTATGCTGGTGCGGTTGTGATTACTGTTATGCTTTTTATGTGCTTATGGTCGTATCTTTAATGTATTTTCAGCCTAACGCCAAGGACATTGCAGAAGATCTACCTCTAGTTACAAAATGAGGTATTATGTTTTTAGGTTTTTGTATATTTTTTTATGCGCATTTCTTAATCTGCTATTTTTAAATTCATACATACTAATGGCTTTCATGTCCGCCCCCCTTTTGTCTTCAATTGCAGCCGACCAATGGAGGAAGATGTAAGTTCTTTAGTCTTTTATCCTTTCAGTTTCAGTACTTTCATCCAATACATGCTGCCAAATTGGTTCAGTTTTATGTCTTATGCACAAGTGTGAATGAATCTCTTATAATTTATTTGTTTCTTTTAAATATGAAATGTCTGCTATCTTCTTGGTGCTATGGTTGGCAGGAAGCAATATGATTTTTTAAGGCTAGTTTTATACCTGCTGAAGTAAAACTTTGGTTCAATTCTGTATTCTCTTTCCACTTTGTTTTTATGGTTGATTATTGTGATTTTTTTCCCCATCTATTTGATGATTGTTTACCAATTTCTTACTCTTTTGCGTTATCCAAAAGGTTACATTTCTAATAAAAAAAATGATAACTATGACAATTCCATAAAGTTTATTTATTTTAATTTTTTTCAGTAACTATGTAGGTTCTGTTTCTTTTTTATCATATCTAGTGGTAGCTCAACGTTTTCTTTTACTAGGATTTTTTTTTTCAAATCTTTCCAGCCCCCCTTCCCCAGTGTGTTCCTTTGGGGTTTTATTGCAAAATCTTTGGACTTCTGCAATCGTATTCTATTTATATTTTTACTTCCAACTTTACTGTAGTGTTTCTACAAACACCATTAGAGTGTACTTACTTTGAATCCTCTGCAGACTAGCAAAAATGAGGAAGAGGAGTTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCTTTGTTTCTGCGTGTTTAACAGCTGCGCTTTGTAATTAACAGGCAGAACTTTTCAGTTAAAAACTATCTCTATGTGTTGGACCTTTTCGGCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTTTTACTGATGTTTGCTTACTCTTTTTCTTGCTTTGTATAGACTCAAGAGTCACTCATCTTATGTATTATTACTATGACCAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGAATAGTTGGCCATCTCGTAATATGTTCAGTTTGACTTCTTGAGTTGACTTCATATGCATGCCAATCTTATTGTCTTTCTCCCTGTGATAAACATCAAACTTTCATTTGATAGCTTGATCTTCTTCTAAGTTTGGAGCTATCTATATCAGTTTGTACTTCATTTTAATCTCTCTTTTCCTGCGAACCATTTGCCAAATACTGTAACAATAGAAATTGTATCTGTTTAGGTATCAGAGATTACTTAGTAGAAATGCTATATCTGTTTTTAACGTGTGTCTTTTATGGAGTTTTGTCTTTGCAACTTGGGACATCGTTTGTTTTGATCACAAGTGATATCATCATTCAGAATTATGAGATCTTTTGGGCTTGGTAGATCATGTGTTGTTCCTCATGTCTTTTTCCTTTGTTTAACTATGTTCATGTGTACACACCAAGGAATTAAATTTACACTTTCAT

mRNA sequence

ATGACCTTGGCAAAGCTGTGTAAAACTGCATTTGATATGCTTATTCTGTGCTGCAAACAAGATTCTGGTGAAGGGTTGATATGTGAAATGAATACTATTTCGACATCGGCGCACACATTTCTTCTGCCCATCTTCTCGTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCTACCTCGCCCTCGCCTTCTCCGTCGGTCTCCTTCTCCGCTTCCGACTAGCAAAAATGAGGAAGAGGAGTTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGAATAGTTGGCCATCTCGTAATATGTTCAGTTTGACTTCTTGAGTTGACTTCATATGCATGCCAATCTTATTGTCTTTCTCCCTGTGATAAACATCAAACTTTCATTTGATAGCTTGATCTTCTTCTAAGTTTGGAGCTATCTATATCAGTTTGTACTTCATTTTAATCTCTCTTTTCCTGCGAACCATTTGCCAAATACTGTAACAATAGAAATTGTATCTGTTTAGGTATCAGAGATTACTTAGTAGAAATGCTATATCTGTTTTTAACGTGTGTCTTTTATGGAGTTTTGTCTTTGCAACTTGGGACATCGTTTGTTTTGATCACAAGTGATATCATCATTCAGAATTATGAGATCTTTTGGGCTTGGTAGATCATGTGTTGTTCCTCATGTCTTTTTCCTTTGTTTAACTATGTTCATGTGTACACACCAAGGAATTAAATTTACACTTTCAT

Coding sequence (CDS)

ATGACCTTGGCAAAGCTGTGTAAAACTGCATTTGATATGCTTATTCTGTGCTGCAAACAAGATTCTGGTGAAGGGTTGATATGTGAAATGAATACTATTTCGACATCGGCGCACACATTTCTTCTGCCCATCTTCTCGTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCTACCTCGCCCTCGCCTTCTCCGTCGGTCTCCTTCTCCGCTTCCGACTAGCAAAAATGAGGAAGAGGAGTTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAGTAA

Protein sequence

MTLAKLCKTAFDMLILCCKQDSGEGLICEMNTISTSAHTFLLPIFSFDLLRYSSPLRRLPRPRLLRRSPSPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Homology
[Close]
BLAST of CmaCh16G006170 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-45
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0 

Query: 70  SPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 129
           +P    K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 12  TPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71

Query: 130 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 72  EMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of CmaCh16G006170 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-45
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0 

Query: 70  SPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 129
           +P    K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 12  TPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71

Query: 130 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 72  EMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of CmaCh16G006170 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-45
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0 

Query: 70  SPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 129
           +P    K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 12  TPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71

Query: 130 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 72  EMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of CmaCh16G006170 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-44
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 0 

Query: 70  SPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 129
           +P   ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 11  TPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 70

Query: 130 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           EMWTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 71  EMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

[Close]
BLAST of CmaCh16G006170 vs. ExPASy Swiss-Prot
Match: Q18786 (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239 GN=snr-4 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.5e-41
Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 0 

Query: 78  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 137
           E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK
Sbjct: 20  EDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79

Query: 138 TGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           TGKGKKKA+ V KDRFISKMFLRGDSVI+V++NP
Sbjct: 80  TGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113

[Close]
BLAST of CmaCh16G006170 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]
BLAST of CmaCh16G006170 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 12  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 71

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 72  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of CmaCh16G006170 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 12  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 71

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 72  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of CmaCh16G006170 vs. TAIR 10
Match: AT2G47640.4 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]
BLAST of CmaCh16G006170 vs. TAIR 10
Match: AT3G62840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

The following BLAST results are available for this feature:
BLAST of CmaCh16G006170 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3SZF85.0e-4585.29Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1[more]
P623165.0e-4585.29Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=... [more]
P623175.0e-4585.29Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV... [more]
Q9VI101.1e-4484.31Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=722... [more]
Q187867.5e-4185.11Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239... [more]
BLAST of CmaCh16G006170 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G47640.17.7e-4995.88Small nuclear ribonucleoprotein family protein [more]
AT2G47640.27.7e-4995.88Small nuclear ribonucleoprotein family protein [more]
AT2G47640.37.7e-4995.88Small nuclear ribonucleoprotein family protein [more]
AT2G47640.47.7e-4995.88Small nuclear ribonucleoprotein family protein [more]
AT3G62840.17.7e-4995.88Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 90..169
e-value: 5.1E-20
score: 82.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 93..167
e-value: 2.3E-18
score: 65.6
NoneNo IPR availableGENE3D2.30.30.100coord: 80..172
e-value: 3.0E-41
score: 141.1
NoneNo IPR availablePANTHERPTHR12777:SF6SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 75..172
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 75..172
IPR027248Small nuclear ribonucleoprotein Sm D2CDDcd01720Sm_D2coord: 82..171
e-value: 1.53572E-63
score: 188.308
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 85..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G006170.1CmaCh16G006170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0030532 small nuclear ribonucleoprotein complex