CmaCh14G003790.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGAATGCGGTTATGTTCCGTCCGACATTGTCGAACCCTCGACAAACTCTGATACCGAGCAAATCCGTCTCTAGCACTGTTCGGTTCGCAGAGGTAGCCGGTGGTACGACCGCAGAGTGTGCCGCTGTGTTCTGTTGTTGTCCTTGTATCGCCGTTAACTTCCTCGTCCTCGCCATTTACAAGCTTCCGGCTGGCCTCTGCCGCCGCGCTCTGAGGACAAAGCACCGACAGAACGTGAAGAAGAAAAAAGGAATTCATCCGGCGAGGCTGGGCCGATTCCCTGGCGGAATTCTCGACGATGCGGATGTTCAGGTTATTACGATGGAAAAAACGGTGTACTCAGAGGAGGCGGAGAGGAAAGTAGTGGAACTTGAAAAGGAGATGTGGGAGGTTTTTTACAATACTGGATTCTGGAGAAGCCCTTCACAGAGAGATCAAATTTCAAGCTCTAATTGAGAAACGATTCCTCTCCGTTTTCTTCCCTAATTCCTTTGCAAAATTTCCTAAAACATGAATGAAAAGGGAAATTTCTCCCTCTTCAAACTTTCTGCGTTTGAATATAATTGAATTTAATTTATTTTTTTGAGCATCAAAGTTCTTCCATCTTTTTTCTCGTTCTCATGCCATCTTCCCCAAAAAACATACTTCGCTCTCTCTCTCTCCCGCTCTCTCTTCCTTTTCATTTTAATTATCTTCTACATATAAGAACGCCAAACCAATATTTGGATTTATTATTATTTTTTAATTGTAGTAATTTGTGTTAGGCTTAAATGATTTTTCCCCCAAGTTTTCGTTTTAATTTTTCTATTTAGTTCATTTAA ATGTCGAATGCGGTTATGTTCCGTCCGACATTGTCGAACCCTCGACAAACTCTGATACCGAGCAAATCCGTCTCTAGCACTGTTCGGTTCGCAGAGGTAGCCGGTGGTACGACCGCAGAGTGTGCCGCTGTGTTCTGTTGTTGTCCTTGTATCGCCGTTAACTTCCTCGTCCTCGCCATTTACAAGCTTCCGGCTGGCCTCTGCCGCCGCGCTCTGAGGACAAAGCACCGACAGAACGTGAAGAAGAAAAAAGGAATTCATCCGGCGAGGCTGGGCCGATTCCCTGGCGGAATTCTCGACGATGCGGATGTTCAGGTTATTACGATGGAAAAAACGGTGTACTCAGAGGAGGCGGAGAGGAAAGTAGTGGAACTTGAAAAGGAGATGTGGGAGTTCATTTAA ATGTCGAATGCGGTTATGTTCCGTCCGACATTGTCGAACCCTCGACAAACTCTGATACCGAGCAAATCCGTCTCTAGCACTGTTCGGTTCGCAGAGGTAGCCGGTGGTACGACCGCAGAGTGTGCCGCTGTGTTCTGTTGTTGTCCTTGTATCGCCGTTAACTTCCTCGTCCTCGCCATTTACAAGCTTCCGGCTGGCCTCTGCCGCCGCGCTCTGAGGACAAAGCACCGACAGAACGTGAAGAAGAAAAAAGGAATTCATCCGGCGAGGCTGGGCCGATTCCCTGGCGGAATTCTCGACGATGCGGATGTTCAGGTTATTACGATGGAAAAAACGGTGTACTCAGAGGAGGCGGAGAGGAAAGTAGTGGAACTTGAAAAGGAGATGTGGGAGTTCATTTAA MSNAVMFRPTLSNPRQTLIPSKSVSSTVRFAEVAGGTTAECAAVFCCCPCIAVNFLVLAIYKLPAGLCRRALRTKHRQNVKKKKGIHPARLGRFPGGILDDADVQVITMEKTVYSEEAERKVVELEKEMWEFI Homology
BLAST of CmaCh14G003790.1 vs. ExPASy TrEMBL
Match: A0A6J1J6H8 (uncharacterized protein LOC111481788 OS=Cucurbita maxima OX=3661 GN=LOC111481788 PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 2.1e-65 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of CmaCh14G003790.1 vs. ExPASy TrEMBL
Match: A0A6J1F7R8 (uncharacterized protein LOC111441632 OS=Cucurbita moschata OX=3662 GN=LOC111441632 PE=4 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61 Identity = 121/131 (92.37%), Postives = 127/131 (96.95%), Query Frame = 0
BLAST of CmaCh14G003790.1 vs. ExPASy TrEMBL
Match: A0A0A0LGV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G784360 PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 3.9e-40 Identity = 92/139 (66.19%), Postives = 106/139 (76.26%), Query Frame = 0
BLAST of CmaCh14G003790.1 vs. ExPASy TrEMBL
Match: A0A5D3DQ13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004890 PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 1.9e-39 Identity = 90/139 (64.75%), Postives = 107/139 (76.98%), Query Frame = 0
BLAST of CmaCh14G003790.1 vs. ExPASy TrEMBL
Match: A0A1S4DUJ2 (uncharacterized protein LOC103486710 OS=Cucumis melo OX=3656 GN=LOC103486710 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34 Identity = 84/139 (60.43%), Postives = 100/139 (71.94%), Query Frame = 0
BLAST of CmaCh14G003790.1 vs. NCBI nr
Match: XP_022983149.1 (uncharacterized protein LOC111481788 [Cucurbita maxima]) HSP 1 Score: 258.1 bits (658), Expect = 4.3e-65 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of CmaCh14G003790.1 vs. NCBI nr
Match: XP_022934460.1 (uncharacterized protein LOC111441632 [Cucurbita moschata] >KAG6580769.1 hypothetical protein SDJN03_20771, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017522.1 hypothetical protein SDJN02_19387, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 245.7 bits (626), Expect = 2.2e-61 Identity = 121/131 (92.37%), Postives = 127/131 (96.95%), Query Frame = 0
BLAST of CmaCh14G003790.1 vs. NCBI nr
Match: XP_023528177.1 (uncharacterized protein LOC111791168 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 244.6 bits (623), Expect = 4.9e-61 Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 0
BLAST of CmaCh14G003790.1 vs. NCBI nr
Match: XP_011652052.1 (uncharacterized protein LOC105434984 [Cucumis sativus] >KGN59241.1 hypothetical protein Csa_001735 [Cucumis sativus]) HSP 1 Score: 174.1 bits (440), Expect = 8.1e-40 Identity = 92/139 (66.19%), Postives = 106/139 (76.26%), Query Frame = 0
BLAST of CmaCh14G003790.1 vs. NCBI nr
Match: XP_038905288.1 (uncharacterized protein LOC120091362 [Benincasa hispida]) HSP 1 Score: 173.7 bits (439), Expect = 1.1e-39 Identity = 92/139 (66.19%), Postives = 108/139 (77.70%), Query Frame = 0
BLAST of CmaCh14G003790.1 vs. TAIR 10
Match: AT5G06380.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 79.3 bits (194), Expect = 2.5e-15 Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 0
BLAST of CmaCh14G003790.1 vs. TAIR 10
Match: AT3G11690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 78.2 bits (191), Expect = 5.6e-15 Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 0
BLAST of CmaCh14G003790.1 vs. TAIR 10
Match: AT2G27180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 70.9 bits (172), Expect = 9.0e-13 Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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