CmaCh12G008530.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTCCTTACGAATCAAAATCAAGCACTTCCACAGCTCTCTCTCTCTCTCATTTCTCTCCAAGATCGAAAATGGCGAACAGATGTGAGATCTTCTGCGAAATTCTCATCGCCATTCTTATTCCTCCTCTCGGAGTCTGCCTCAAACACGGCTGTTGCACGGTAATCTTAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCGTCTCTCTGTAATTTCCTTCGCTAATCTGAACTTACGATTACCTAAAACAGCCGACGAGACGATCTGATCTAAAACAGACGAAATTAGGTTTCAGTTTCGGTTTAATTTTGTGTGTAATTGCAGGTGGAATTTTGTCTCTGTTTGATTTTGACTCTGCTCGGTTACATTCCGGGGATCATCTACGCTCTCTACTCCATCGTGTTTGTCGATCGCGATCATTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCCGGTGCCGACGGTGTAGAACAAGTTTGAATCTCTTCTTCACTCTGTTTTAATTTCTCGAATAAGGTTTATTAACTGTTTGGTTGCTTTTGGATATGATTTGATTTGATTTACATAGATTTTCTGAGGCTTGCTCTTACTGATTTGGAGTTTATTAGGGAGTATTCGGATCATTTGTTCAAGTGCTTAGAAAATTGAAATATCAATGGCGTTTGGTTTTGAGTTAAAGAGATTGAAGTGTGTTCTTATGTAGAAAGAAATATAGGTATTAGCCATGTATTGTAAGTGCAACAAAGATCATTAAAGAAACAAGCAAATATCATTCATCTAAGTTCTAGTAATAAACTAGACTACTATTATATGCACATGACCCATTAACACTTGTTGTAACTTCTAGTGATGTAGATCGACCTCAACGTGGAAGTTGTTCGAGAAGATGACCACATATGATACACGAGCTTGTCGTTCATTTTTTTTTTTCTTTTGTAGAAAATAAGAAATGTTTTATTATTTTGAAATAATTGTTGATGTGTTATCTTACAATACTTTGTACTAATACTTCGTCTGTTCTTATCTTTTTTCCATACTCAAAATTGGAAGAAAAGAATATCGAGTAAATAAATGAATATCACCA ACTCCTTACGAATCAAAATCAAGCACTTCCACAGCTCTCTCTCTCTCTCATTTCTCTCCAAGATCGAAAATGGCGAACAGATGTGAGATCTTCTGCGAAATTCTCATCGCCATTCTTATTCCTCCTCTCGGAGTCTGCCTCAAACACGGCTGTTGCACGGTGGAATTTTGTCTCTGTTTGATTTTGACTCTGCTCGGTTACATTCCGGGGATCATCTACGCTCTCTACTCCATCGTGTTTGTCGATCGCGATCATTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCCGGTGCCGACGGTGTAGAACAATGATGTAGATCGACCTCAACGTGGAAGTTGTTCGAGAAGATGACCACATATGATACACGAGCTTGTCGTTCATTTTTTTTTTTCTTTTGTAGAAAATAAGAAATGTTTTATTATTTTGAAATAATTGTTGATGTGTTATCTTACAATACTTTGTACTAATACTTCGTCTGTTCTTATCTTTTTTCCATACTCAAAATTGGAAGAAAAGAATATCGAGTAAATAAATGAATATCACCA ATGGCGAACAGATGTGAGATCTTCTGCGAAATTCTCATCGCCATTCTTATTCCTCCTCTCGGAGTCTGCCTCAAACACGGCTGTTGCACGGTGGAATTTTGTCTCTGTTTGATTTTGACTCTGCTCGGTTACATTCCGGGGATCATCTACGCTCTCTACTCCATCGTGTTTGTCGATCGCGATCATTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCCGGTGCCGACGGTGTAG MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDRDHFFDEYRRPLYSPVPTV Homology
BLAST of CmaCh12G008530.1 vs. ExPASy Swiss-Prot
Match: O82232 (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 PE=3 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 2.4e-26 Identity = 52/72 (72.22%), Postives = 64/72 (88.89%), Query Frame = 0
BLAST of CmaCh12G008530.1 vs. ExPASy Swiss-Prot
Match: Q9SUI0 (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 PE=3 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 6.9e-26 Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 0
BLAST of CmaCh12G008530.1 vs. ExPASy Swiss-Prot
Match: Q9M095 (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 PE=3 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 5.1e-21 Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 0
BLAST of CmaCh12G008530.1 vs. ExPASy Swiss-Prot
Match: Q9LRI7 (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 3.4e-17 Identity = 39/66 (59.09%), Postives = 54/66 (81.82%), Query Frame = 0
BLAST of CmaCh12G008530.1 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 5.3e-10 Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0
BLAST of CmaCh12G008530.1 vs. TAIR 10
Match: AT4G28088.1 (Low temperature and salt responsive protein family ) HSP 1 Score: 131.0 bits (328), Expect = 4.3e-31 Identity = 60/72 (83.33%), Postives = 67/72 (93.06%), Query Frame = 0
BLAST of CmaCh12G008530.1 vs. TAIR 10
Match: AT2G24040.1 (Low temperature and salt responsive protein family ) HSP 1 Score: 119.0 bits (297), Expect = 1.7e-27 Identity = 52/72 (72.22%), Postives = 64/72 (88.89%), Query Frame = 0
BLAST of CmaCh12G008530.1 vs. TAIR 10
Match: AT4G30660.1 (Low temperature and salt responsive protein family ) HSP 1 Score: 117.5 bits (293), Expect = 4.9e-27 Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 0
BLAST of CmaCh12G008530.1 vs. TAIR 10
Match: AT4G30660.2 (Low temperature and salt responsive protein family ) HSP 1 Score: 117.5 bits (293), Expect = 4.9e-27 Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 0
BLAST of CmaCh12G008530.1 vs. TAIR 10
Match: AT4G30650.1 (Low temperature and salt responsive protein family ) HSP 1 Score: 101.3 bits (251), Expect = 3.6e-22 Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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