CmaCh12G002470.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G002470.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSWIM-type domain-containing protein
LocationCma_Chr12: 1240754 .. 1242439 (+)
Sequence length513
RNA-Seq ExpressionCmaCh12G002470.1
SyntenyCmaCh12G002470.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTGTTGCTTCTACTTCATCCGCACCGGACCACCCCCGTCCTCGCCTTCCTTGGTTCGAGCCCTCCCAAGCTATGACTGACCGGATTGTTCGAGCTCTCCACCATCACCTCCGTCTCCACACCGCTCTGATTCTTCATTCTGTGTTGGGTGCCACAGGCAATGTCTACATTGTGTCTCTATCCTCTACACCCCCTCGTGCACTTGCCCCAATCGTATTACGCCTTGCAAACACATGTTATTTGTTTACATTCGAGCTCTGGGTGTGTCACTGGATGATATATGTCTTTGGCAGAGAACGCTTCGACCTTGTCAATTGAATCGTTTGCTTACTGCACCTGCTATGACGGAATCGCTTGCTGAAATTCGTCTACGTAGAGTATTTCATCAGCAATTCTTTCAGGTAAAAGAAAGGACTTGTGTACTTATTGTAGATATTGAAGATGGGGCTGCTTGTCCTGTTTGTTTGGATGATCTAAAGGACGATCGGGTTGTGGCTTGTACGACATGTCGAAATCTCGTTCATGAAGATTGTTTCTCGAGGTGGAAACGAAGCAAGGGAAGGAGAAATATTAGCTGCGTAGTTTGTAGGGCAAGATGGAAGGACACGAACAAATGAACAAAAGTATTTGAATTTTTCTGCCCATCTCAATGAGCACGACGCAATTGACAACAATCGCTATAATAGCTAAATAGACACCATAAGATGTCTCGTAATAAAACTATTGACGAGTGTTCAATTAATACTCTTAAAAGTTAAAAAATACAATTAGCATTATTTGTTAAAAAAAATACTGAAAAACTTTCAAAAATATTTTAAAAATATCCTTAAAACTTTAATAATTTTCATTTACTTTTTTTTAATCTTTTAAAAAAATTAAAATAATTGTGTTTGCTATTAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATCTTAAAATTTTTAATAATGTTTGAAAAATACTTGTAGTATTAACATGTTTAATATCTATAAAAAAAAAAATTAAATAATTTCTTCAAATTTATCAATTAAATTTTTGAAAATTTAAAGGTATTTTTTAAATATATTTTTCAAATCTATTAATTTTTTCATCCATATTTTAGGAATATATTAAAAAATAAAAATCGATATTTTCCCAAAAGATTGAATAGTAAGCGATAGCCTTGTTTCTGGACAAATCCTCGCCCTTTTCTTCTTCAATCAATTTGTGGAGTTCAATAATTAATTGAATGAAGATTCAATGGAGTTGCAGAAGTGAATTTGAGCTATAGTAATCAGTATTTTCGATCTTAGCCAAAGGAGCAGCAGCTTTCATCAATCTCACACTAACAAATTTGATCCGTTGCGCACTCCCAAGTCTGAATTCTTACTGTTACCCTGCTTTCGTTGCCTAAGTTTTGTGCTAGGA

mRNA sequence

ATGGAGTCTGTTGCTTCTACTTCATCCGCACCGGACCACCCCCGTCCTCGCCTTCCTTGGTTCGAGCCCTCCCAAGCTATGACTGACCGGATTGTTCGAGCTCTCCACCATCACCTCCGTCTCCACACCGCTCTGATTCTTCATTCTGTGTTGGGTGCCACAGGCAATGTCTACATTGTGTCTCTATCCTCTACACCCCCTCGTGCACTTGCCCCAATCAGAACGCTTCGACCTTGTCAATTGAATCGTTTGCTTACTGCACCTGCTATGACGGAATCGCTTGCTGAAATTCGTCTACGTAGAGTATTTCATCAGCAATTCTTTCAGGTAAAAGAAAGGACTTGTGTACTTATTGTAGATATTGAAGATGGGGCTGCTTGTCCTGTTTGTTTGGATGATCTAAAGGACGATCGGGTTGTGGCTTGTACGACATGTCGAAATCTCGTTCATGAAGATTGTTTCTCGAGGTGGAAACGAAGCAAGGGAAGGAGAAATATTAGCTGCGTAGTTTGA

Coding sequence (CDS)

ATGGAGTCTGTTGCTTCTACTTCATCCGCACCGGACCACCCCCGTCCTCGCCTTCCTTGGTTCGAGCCCTCCCAAGCTATGACTGACCGGATTGTTCGAGCTCTCCACCATCACCTCCGTCTCCACACCGCTCTGATTCTTCATTCTGTGTTGGGTGCCACAGGCAATGTCTACATTGTGTCTCTATCCTCTACACCCCCTCGTGCACTTGCCCCAATCAGAACGCTTCGACCTTGTCAATTGAATCGTTTGCTTACTGCACCTGCTATGACGGAATCGCTTGCTGAAATTCGTCTACGTAGAGTATTTCATCAGCAATTCTTTCAGGTAAAAGAAAGGACTTGTGTACTTATTGTAGATATTGAAGATGGGGCTGCTTGTCCTGTTTGTTTGGATGATCTAAAGGACGATCGGGTTGTGGCTTGTACGACATGTCGAAATCTCGTTCATGAAGATTGTTTCTCGAGGTGGAAACGAAGCAAGGGAAGGAGAAATATTAGCTGCGTAGTTTGA

Protein sequence

MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIVSLSSTPPRALAPIRTLRPCQLNRLLTAPAMTESLAEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCFSRWKRSKGRRNISCVV
Homology
[Close]
BLAST of CmaCh12G002470.1 vs. ExPASy TrEMBL
Match: A0A6J1KP39 (LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 OS=Cucurbita maxima OX=3661 GN=LOC111496319 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.4e-82
Identity = 163/196 (83.16%), Postives = 164/196 (83.67%), Query Frame = 0 

Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIV 60
           MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIV
Sbjct: 13  MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIV 72

Query: 61  SLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTESL 120
           SL  TP    P  + P                       RTLRPCQLNRLLTAPAMTESL
Sbjct: 73  SLLYTPSCTCPNRITPCKHMLFVYIRALGVSLDDICLWQRTLRPCQLNRLLTAPAMTESL 132

Query: 121 AEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCF 171
           AEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCF
Sbjct: 133 AEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCF 192

[Close]
BLAST of CmaCh12G002470.1 vs. ExPASy TrEMBL
Match: A0A6J1GJ16 (mitogen-activated protein kinase kinase kinase 1 OS=Cucurbita moschata OX=3662 GN=LOC111454315 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.9e-72
Identity = 151/197 (76.65%), Postives = 154/197 (78.17%), Query Frame = 0 

Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSSAPD PRPRLPWFEPSQAMT RIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 13  MESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYI 72

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLLTAP M ES
Sbjct: 73  VSLSSTPSCTCPDRITPCKHMLFVYIRALGVSLDDACLWRRTLRPCQLNRLLTAPVMAES 132

Query: 121 LAEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDC 171
           LAEI LRRVFHQQFFQVKERTCV IVDIEDGAACPVCLDDLKDDRVVACTTCRNLVH+DC
Sbjct: 133 LAEISLRRVFHQQFFQVKERTCVPIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHDDC 192

[Close]
BLAST of CmaCh12G002470.1 vs. ExPASy TrEMBL
Match: A0A5A7VCN6 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003720 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.6e-54
Identity = 128/204 (62.75%), Postives = 144/204 (70.59%), Query Frame = 0 

Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSS    PRP +P F+PSQ + DRIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 1   MESVASTSS----PRP-VPRFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYI 60

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLL AP M +S
Sbjct: 61  VSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKS 120

Query: 121 LAEIRLRRVFHQQFFQVKER------TCVLIVDIEDGAACPVCLDDL-KDDRVVACTTCR 171
           LAEI LR+VFHQQFFQV +R      +CV + D+EDG ACPVCLDD+ K+DRVVAC+TCR
Sbjct: 121 LAEIGLRKVFHQQFFQVNDRACSSSSSCVTVEDMEDGTACPVCLDDMKKNDRVVACSTCR 180

[Close]
BLAST of CmaCh12G002470.1 vs. ExPASy TrEMBL
Match: A0A1S4DW96 (uncharacterized protein LOC103488177 OS=Cucumis melo OX=3656 GN=LOC103488177 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.6e-54
Identity = 128/204 (62.75%), Postives = 144/204 (70.59%), Query Frame = 0 

Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSS    PRP +P F+PSQ + DRIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 1   MESVASTSS----PRP-VPRFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYI 60

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLL AP M +S
Sbjct: 61  VSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKS 120

Query: 121 LAEIRLRRVFHQQFFQVKER------TCVLIVDIEDGAACPVCLDDL-KDDRVVACTTCR 171
           LAEI LR+VFHQQFFQV +R      +CV + D+EDG ACPVCLDD+ K+DRVVAC+TCR
Sbjct: 121 LAEIGLRKVFHQQFFQVNDRACSSSSSCVTVEDMEDGTACPVCLDDMKKNDRVVACSTCR 180

[Close]
BLAST of CmaCh12G002470.1 vs. ExPASy TrEMBL
Match: A0A6J1BPZ4 (uncharacterized protein LOC111004703 OS=Momordica charantia OX=3673 GN=LOC111004703 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.8e-53
Identity = 122/200 (61.00%), Postives = 137/200 (68.50%), Query Frame = 0 

Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSS P  PR  L  F+PSQA+ DRIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 27  MESVASTSSPPRRPRLHLTRFKPSQAVADRIVRALHHHLRLLHRSDSNFFVLGATGNVYI 86

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLS+TP    P  + P                       RTLRPC LNRLLTAP M ES
Sbjct: 87  VSLSTTPSCSCPDRITPCKHILFIYIRALGVSLDDACLRRRTLRPCHLNRLLTAPIMLES 146

Query: 121 LAEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLK---DDRVVACTTCRNLVH 171
           +A I +RRVFHQ+FFQVK R    +VD+EDG  CPVCLD++K    DRVVAC TCRN+VH
Sbjct: 147 VAAIGVRRVFHQRFFQVKGRASASVVDVEDGTTCPVCLDEMKKDDSDRVVACMTCRNVVH 206

[Close]
BLAST of CmaCh12G002470.1 vs. NCBI nr
Match: XP_023002495.1 (LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [Cucurbita maxima])

HSP 1 Score: 314.7 bits (805), Expect = 4.9e-82
Identity = 163/196 (83.16%), Postives = 164/196 (83.67%), Query Frame = 0 

Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIV 60
           MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIV
Sbjct: 13  MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIV 72

Query: 61  SLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTESL 120
           SL  TP    P  + P                       RTLRPCQLNRLLTAPAMTESL
Sbjct: 73  SLLYTPSCTCPNRITPCKHMLFVYIRALGVSLDDICLWQRTLRPCQLNRLLTAPAMTESL 132

Query: 121 AEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCF 171
           AEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCF
Sbjct: 133 AEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCF 192

[Close]
BLAST of CmaCh12G002470.1 vs. NCBI nr
Match: XP_022951525.1 (mitogen-activated protein kinase kinase kinase 1 [Cucurbita moschata])

HSP 1 Score: 281.2 bits (718), Expect = 6.0e-72
Identity = 151/197 (76.65%), Postives = 154/197 (78.17%), Query Frame = 0 

Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSSAPD PRPRLPWFEPSQAMT RIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 13  MESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYI 72

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLLTAP M ES
Sbjct: 73  VSLSSTPSCTCPDRITPCKHMLFVYIRALGVSLDDACLWRRTLRPCQLNRLLTAPVMAES 132

Query: 121 LAEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDC 171
           LAEI LRRVFHQQFFQVKERTCV IVDIEDGAACPVCLDDLKDDRVVACTTCRNLVH+DC
Sbjct: 133 LAEISLRRVFHQQFFQVKERTCVPIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHDDC 192

[Close]
BLAST of CmaCh12G002470.1 vs. NCBI nr
Match: KAG7020300.1 (Mitogen-activated protein kinase kinase kinase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.9 bits (694), Expect = 3.6e-69
Identity = 151/199 (75.88%), Postives = 154/199 (77.39%), Query Frame = 0 

Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSSAPD PRPRLPWFEPSQAMT RIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 1   MESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYI 60

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLLTAP M ES
Sbjct: 61  VSLSSTPSCTCPDRITPCKHVLFVYIRALGVSLDDVCLWRRTLRPCQLNRLLTAPVMAES 120

Query: 121 LAEIRLRRVFHQQFFQVKERT-CVLIVDIEDGAACPVCLDDL-KDDRVVACTTCRNLVHE 171
           LAEI LRRVFHQQFFQVKERT CV IVDIEDGAACPVCLDDL KDDRVVACTTCRNLVH+
Sbjct: 121 LAEISLRRVFHQQFFQVKERTSCVPIVDIEDGAACPVCLDDLKKDDRVVACTTCRNLVHD 180

[Close]
BLAST of CmaCh12G002470.1 vs. NCBI nr
Match: XP_023537388.1 (mitogen-activated protein kinase kinase kinase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 150/199 (75.38%), Postives = 153/199 (76.88%), Query Frame = 0 

Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSSAPD PRPRLPWFEPSQAMT RIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 13  MESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYI 72

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLLTAP M ES
Sbjct: 73  VSLSSTPSCTCPDRITPCKHMLFVYIRALGVSLDDVCLWRRTLRPCQLNRLLTAPVMAES 132

Query: 121 LAEIRLRRVFHQQFFQVKERT-CVLIVDIEDGAACPVCLDDL-KDDRVVACTTCRNLVHE 171
           LAEI LRRVFHQQFFQVKERT CV IVDIEDG ACPVCLDDL KDDRVVACTTCRNLVH+
Sbjct: 133 LAEISLRRVFHQQFFQVKERTSCVPIVDIEDGTACPVCLDDLKKDDRVVACTTCRNLVHD 192

[Close]
BLAST of CmaCh12G002470.1 vs. NCBI nr
Match: KAG6585384.1 (Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 242.7 bits (618), Expect = 2.4e-60
Identity = 138/189 (73.02%), Postives = 142/189 (75.13%), Query Frame = 0 

Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSSAPD PRPRLPWFEPSQAMT RIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 1   MESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYI 60

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLLTAP M ES
Sbjct: 61  VSLSSTPSCTCPDLITPCKHVLFVYIRALGVSLDDVCLWRRTLRPCQLNRLLTAPVMAES 120

Query: 121 LAEIRLRRVFHQQFFQVKERT-CVLIVDIEDGAACPVCLDDL-KDDRVVACTTCRNLVHE 161
           LAEI LRRVFHQQFFQVKERT CV IVDIEDGAACPVCLDDL KDDRVVACTTCRNLVH+
Sbjct: 121 LAEISLRRVFHQQFFQVKERTSCVPIVDIEDGAACPVCLDDLKKDDRVVACTTCRNLVHD 180

[Close]
BLAST of CmaCh12G002470.1 vs. TAIR 10
Match: AT5G11620.1 (SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related )

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-16
Identity = 74/225 (32.89%), Postives = 99/225 (44.00%), Query Frame = 0 

Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRL---HTALILHSVLGATGNV 60
           MESV S   +P +   R      +Q + DRI+RAL H +RL     A   H VLGAT NV
Sbjct: 1   MESVGSNQISP-YVSNRDQRHFLAQPVADRILRALRHRIRLLHRPNAGTFH-VLGATCNV 60

Query: 61  YIVSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMT 120
           Y V+L +TP    P    P                       R LR C L  L +AP   
Sbjct: 61  YTVTLMATPTCTCPDRKKPCKHILFVLIRVLGIPLDDKCLRQRRLRTCLLFHLFSAPTRP 120

Query: 121 ESLAEIRLRRVFHQQF----------FQVKERTCVLIVDI-EDGAACPVCLDDL------ 171
           + LA  RL++ F Q F                T  +  ++ E+ A CP+CLDD+      
Sbjct: 121 DCLASFRLQQRFLQLFPATTSQPGYTTNSSSSTSKMENEVDEEPATCPICLDDIIAIENV 180

The following BLAST results are available for this feature:
BLAST of CmaCh12G002470.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G002470.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KP392.4e-8283.16LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 OS=Cucurbi... [more]
A0A6J1GJ162.9e-7276.65mitogen-activated protein kinase kinase kinase 1 OS=Cucurbita moschata OX=3662 G... [more]
A0A5A7VCN63.6e-5462.75SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A1S4DW963.6e-5462.75uncharacterized protein LOC103488177 OS=Cucumis melo OX=3656 GN=LOC103488177 PE=... [more]
A0A6J1BPZ41.8e-5361.00uncharacterized protein LOC111004703 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
BLAST of CmaCh12G002470.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023002495.14.9e-8283.16LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [Cucurbita... [more]
XP_022951525.16.0e-7276.65mitogen-activated protein kinase kinase kinase 1 [Cucurbita moschata][more]
KAG7020300.13.6e-6975.88Mitogen-activated protein kinase kinase kinase 1, partial [Cucurbita argyrosperm... [more]
XP_023537388.11.1e-6875.38mitogen-activated protein kinase kinase kinase 1-like [Cucurbita pepo subsp. pep... [more]
KAG6585384.12.4e-6073.02Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh12G002470.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G11620.11.3e-1632.89SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 122..170
e-value: 4.1E-7
score: 31.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 126..168
e-value: 6.3E-7
score: 29.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 127..168
score: 8.697757
IPR039903E3 ubiquitin-protein ligase Zswim2PANTHERPTHR21540RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2coord: 74..170
IPR039903E3 ubiquitin-protein ligase Zswim2PANTHERPTHR21540RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2coord: 1..67
NoneNo IPR availablePANTHERPTHR21540:SF4SUBFAMILY NOT NAMEDcoord: 1..67
coord: 74..170
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 119..163

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh12G002470CmaCh12G002470gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G002470.1:exon:1371CmaCh12G002470.1:exon:1371exon
CmaCh12G002470.1:exon:1372CmaCh12G002470.1:exon:1372exon
CmaCh12G002470.1:exon:1373CmaCh12G002470.1:exon:1373exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G002470.1:cdsCmaCh12G002470.1:cdsCDS
CmaCh12G002470.1:cdsCmaCh12G002470.1:cds_2CDS
CmaCh12G002470.1:cdsCmaCh12G002470.1:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh12G002470.1CmaCh12G002470.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
biological_process GO:0016310 phosphorylation
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0008270 zinc ion binding