CmaCh12G002470 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G002470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	SWIM-type domain-containing protein
Location	Cma_Chr12: 1240754 .. 1242439 (+)
RNA-Seq Expression	CmaCh12G002470
Synteny	CmaCh12G002470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTGTTGCTTCTACTTCATCCGCACCGGACCACCCCCGTCCTCGCCTTCCTTGGTTCGAGCCCTCCCAAGCTATGACTGACCGGATTGTTCGAGCTCTCCACCATCACCTCCGTCTCCACACCGCTCTGATTCTTCATTCTGTGTTGGGTGCCACAGGCAATGTCTACATTGTGTCTCTATCCTCTACACCCCCTCGTGCACTTGCCCCAATCGTATTACGCCTTGCAAACACATGTTATTTGTTTACATTCGAGCTCTGGGTGTGTCACTGGATGATATATGTCTTTGGCAGAGAACGCTTCGACCTTGTCAATTGAATCGTTTGCTTACTGCACCTGCTATGACGGAATCGCTTGCTGAAATTCGTCTACGTAGAGTATTTCATCAGCAATTCTTTCAGGTAAAAGAAAGGACTTGTGTACTTATTGTAGATATTGAAGATGGGGCTGCTTGTCCTGTTTGTTTGGATGATCTAAAGGACGATCGGGTTGTGGCTTGTACGACATGTCGAAATCTCGTTCATGAAGATTGTTTCTCGAGGTGGAAACGAAGCAAGGGAAGGAGAAATATTAGCTGCGTAGTTTGTAGGGCAAGATGGAAGGACACGAACAAATGAACAAAAGTATTTGAATTTTTCTGCCCATCTCAATGAGCACGACGCAATTGACAACAATCGCTATAATAGCTAAATAGACACCATAAGATGTCTCGTAATAAAACTATTGACGAGTGTTCAATTAATACTCTTAAAAGTTAAAAAATACAATTAGCATTATTTGTTAAAAAAAATACTGAAAAACTTTCAAAAATATTTTAAAAATATCCTTAAAACTTTAATAATTTTCATTTACTTTTTTTTAATCTTTTAAAAAAATTAAAATAATTGTGTTTGCTATTAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATCTTAAAATTTTTAATAATGTTTGAAAAATACTTGTAGTATTAACATGTTTAATATCTATAAAAAAAAAAATTAAATAATTTCTTCAAATTTATCAATTAAATTTTTGAAAATTTAAAGGTATTTTTTAAATATATTTTTCAAATCTATTAATTTTTTCATCCATATTTTAGGAATATATTAAAAAATAAAAATCGATATTTTCCCAAAAGATTGAATAGTAAGCGATAGCCTTGTTTCTGGACAAATCCTCGCCCTTTTCTTCTTCAATCAATTTGTGGAGTTCAATAATTAATTGAATGAAGATTCAATGGAGTTGCAGAAGTGAATTTGAGCTATAGTAATCAGTATTTTCGATCTTAGCCAAAGGAGCAGCAGCTTTCATCAATCTCACACTAACAAATTTGATCCGTTGCGCACTCCCAAGTCTGAATTCTTACTGTTACCCTGCTTTCGTTGCCTAAGTTTTGTGCTAGGA

mRNA sequence

ATGGAGTCTGTTGCTTCTACTTCATCCGCACCGGACCACCCCCGTCCTCGCCTTCCTTGGTTCGAGCCCTCCCAAGCTATGACTGACCGGATTGTTCGAGCTCTCCACCATCACCTCCGTCTCCACACCGCTCTGATTCTTCATTCTGTGTTGGGTGCCACAGGCAATGTCTACATTGTGTCTCTATCCTCTACACCCCCTCGTGCACTTGCCCCAATCAGAACGCTTCGACCTTGTCAATTGAATCGTTTGCTTACTGCACCTGCTATGACGGAATCGCTTGCTGAAATTCGTCTACGTAGAGTATTTCATCAGCAATTCTTTCAGGTAAAAGAAAGGACTTGTGTACTTATTGTAGATATTGAAGATGGGGCTGCTTGTCCTGTTTGTTTGGATGATCTAAAGGACGATCGGGTTGTGGCTTGTACGACATGTCGAAATCTCGTTCATGAAGATTGTTTCTCGAGGTGGAAACGAAGCAAGGGAAGGAGAAATATTAGCTGCGTAGTTTGA

Coding sequence (CDS)

ATGGAGTCTGTTGCTTCTACTTCATCCGCACCGGACCACCCCCGTCCTCGCCTTCCTTGGTTCGAGCCCTCCCAAGCTATGACTGACCGGATTGTTCGAGCTCTCCACCATCACCTCCGTCTCCACACCGCTCTGATTCTTCATTCTGTGTTGGGTGCCACAGGCAATGTCTACATTGTGTCTCTATCCTCTACACCCCCTCGTGCACTTGCCCCAATCAGAACGCTTCGACCTTGTCAATTGAATCGTTTGCTTACTGCACCTGCTATGACGGAATCGCTTGCTGAAATTCGTCTACGTAGAGTATTTCATCAGCAATTCTTTCAGGTAAAAGAAAGGACTTGTGTACTTATTGTAGATATTGAAGATGGGGCTGCTTGTCCTGTTTGTTTGGATGATCTAAAGGACGATCGGGTTGTGGCTTGTACGACATGTCGAAATCTCGTTCATGAAGATTGTTTCTCGAGGTGGAAACGAAGCAAGGGAAGGAGAAATATTAGCTGCGTAGTTTGA

Protein sequence

MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIVSLSSTPPRALAPIRTLRPCQLNRLLTAPAMTESLAEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCFSRWKRSKGRRNISCVV

Homology

[Close]

BLAST of CmaCh12G002470 vs. ExPASy TrEMBL
Match: A0A6J1KP39 (LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 OS=Cucurbita maxima OX=3661 GN=LOC111496319 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.4e-82
Identity = 163/196 (83.16%), Postives = 164/196 (83.67%), Query Frame = 0


Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIV 60
           MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIV
Sbjct: 13  MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIV 72

Query: 61  SLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTESL 120
           SL  TP    P  + P                       RTLRPCQLNRLLTAPAMTESL
Sbjct: 73  SLLYTPSCTCPNRITPCKHMLFVYIRALGVSLDDICLWQRTLRPCQLNRLLTAPAMTESL 132

Query: 121 AEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCF 171
           AEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCF
Sbjct: 133 AEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCF 192

[Close]

BLAST of CmaCh12G002470 vs. ExPASy TrEMBL
Match: A0A6J1GJ16 (mitogen-activated protein kinase kinase kinase 1 OS=Cucurbita moschata OX=3662 GN=LOC111454315 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.9e-72
Identity = 151/197 (76.65%), Postives = 154/197 (78.17%), Query Frame = 0


Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSSAPD PRPRLPWFEPSQAMT RIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 13  MESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYI 72

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLLTAP M ES
Sbjct: 73  VSLSSTPSCTCPDRITPCKHMLFVYIRALGVSLDDACLWRRTLRPCQLNRLLTAPVMAES 132

Query: 121 LAEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDC 171
           LAEI LRRVFHQQFFQVKERTCV IVDIEDGAACPVCLDDLKDDRVVACTTCRNLVH+DC
Sbjct: 133 LAEISLRRVFHQQFFQVKERTCVPIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHDDC 192

[Close]

BLAST of CmaCh12G002470 vs. ExPASy TrEMBL
Match: A0A5A7VCN6 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003720 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.6e-54
Identity = 128/204 (62.75%), Postives = 144/204 (70.59%), Query Frame = 0


Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSS    PRP +P F+PSQ + DRIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 1   MESVASTSS----PRP-VPRFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYI 60

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLL AP M +S
Sbjct: 61  VSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKS 120

Query: 121 LAEIRLRRVFHQQFFQVKER------TCVLIVDIEDGAACPVCLDDL-KDDRVVACTTCR 171
           LAEI LR+VFHQQFFQV +R      +CV + D+EDG ACPVCLDD+ K+DRVVAC+TCR
Sbjct: 121 LAEIGLRKVFHQQFFQVNDRACSSSSSCVTVEDMEDGTACPVCLDDMKKNDRVVACSTCR 180

[Close]

BLAST of CmaCh12G002470 vs. ExPASy TrEMBL
Match: A0A1S4DW96 (uncharacterized protein LOC103488177 OS=Cucumis melo OX=3656 GN=LOC103488177 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.6e-54
Identity = 128/204 (62.75%), Postives = 144/204 (70.59%), Query Frame = 0


Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSS    PRP +P F+PSQ + DRIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 1   MESVASTSS----PRP-VPRFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYI 60

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLL AP M +S
Sbjct: 61  VSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKS 120

Query: 121 LAEIRLRRVFHQQFFQVKER------TCVLIVDIEDGAACPVCLDDL-KDDRVVACTTCR 171
           LAEI LR+VFHQQFFQV +R      +CV + D+EDG ACPVCLDD+ K+DRVVAC+TCR
Sbjct: 121 LAEIGLRKVFHQQFFQVNDRACSSSSSCVTVEDMEDGTACPVCLDDMKKNDRVVACSTCR 180

[Close]

BLAST of CmaCh12G002470 vs. ExPASy TrEMBL
Match: A0A6J1BPZ4 (uncharacterized protein LOC111004703 OS=Momordica charantia OX=3673 GN=LOC111004703 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.8e-53
Identity = 122/200 (61.00%), Postives = 137/200 (68.50%), Query Frame = 0


Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSS P  PR  L  F+PSQA+ DRIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 27  MESVASTSSPPRRPRLHLTRFKPSQAVADRIVRALHHHLRLLHRSDSNFFVLGATGNVYI 86

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLS+TP    P  + P                       RTLRPC LNRLLTAP M ES
Sbjct: 87  VSLSTTPSCSCPDRITPCKHILFIYIRALGVSLDDACLRRRTLRPCHLNRLLTAPIMLES 146

Query: 121 LAEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLK---DDRVVACTTCRNLVH 171
           +A I +RRVFHQ+FFQVK R    +VD+EDG  CPVCLD++K    DRVVAC TCRN+VH
Sbjct: 147 VAAIGVRRVFHQRFFQVKGRASASVVDVEDGTTCPVCLDEMKKDDSDRVVACMTCRNVVH 206

[Close]

BLAST of CmaCh12G002470 vs. NCBI nr
Match: XP_023002495.1 (LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [Cucurbita maxima])

HSP 1 Score: 314.7 bits (805), Expect = 4.9e-82
Identity = 163/196 (83.16%), Postives = 164/196 (83.67%), Query Frame = 0


Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIV 60
           MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIV
Sbjct: 13  MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRLHTALILHSVLGATGNVYIV 72

Query: 61  SLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTESL 120
           SL  TP    P  + P                       RTLRPCQLNRLLTAPAMTESL
Sbjct: 73  SLLYTPSCTCPNRITPCKHMLFVYIRALGVSLDDICLWQRTLRPCQLNRLLTAPAMTESL 132

Query: 121 AEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCF 171
           AEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCF
Sbjct: 133 AEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDCF 192

[Close]

BLAST of CmaCh12G002470 vs. NCBI nr
Match: XP_022951525.1 (mitogen-activated protein kinase kinase kinase 1 [Cucurbita moschata])

HSP 1 Score: 281.2 bits (718), Expect = 6.0e-72
Identity = 151/197 (76.65%), Postives = 154/197 (78.17%), Query Frame = 0


Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSSAPD PRPRLPWFEPSQAMT RIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 13  MESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYI 72

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLLTAP M ES
Sbjct: 73  VSLSSTPSCTCPDRITPCKHMLFVYIRALGVSLDDACLWRRTLRPCQLNRLLTAPVMAES 132

Query: 121 LAEIRLRRVFHQQFFQVKERTCVLIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHEDC 171
           LAEI LRRVFHQQFFQVKERTCV IVDIEDGAACPVCLDDLKDDRVVACTTCRNLVH+DC
Sbjct: 133 LAEISLRRVFHQQFFQVKERTCVPIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHDDC 192

[Close]

BLAST of CmaCh12G002470 vs. NCBI nr
Match: KAG7020300.1 (Mitogen-activated protein kinase kinase kinase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.9 bits (694), Expect = 3.6e-69
Identity = 151/199 (75.88%), Postives = 154/199 (77.39%), Query Frame = 0


Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSSAPD PRPRLPWFEPSQAMT RIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 1   MESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYI 60

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLLTAP M ES
Sbjct: 61  VSLSSTPSCTCPDRITPCKHVLFVYIRALGVSLDDVCLWRRTLRPCQLNRLLTAPVMAES 120

Query: 121 LAEIRLRRVFHQQFFQVKERT-CVLIVDIEDGAACPVCLDDL-KDDRVVACTTCRNLVHE 171
           LAEI LRRVFHQQFFQVKERT CV IVDIEDGAACPVCLDDL KDDRVVACTTCRNLVH+
Sbjct: 121 LAEISLRRVFHQQFFQVKERTSCVPIVDIEDGAACPVCLDDLKKDDRVVACTTCRNLVHD 180

[Close]

BLAST of CmaCh12G002470 vs. NCBI nr
Match: XP_023537388.1 (mitogen-activated protein kinase kinase kinase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 150/199 (75.38%), Postives = 153/199 (76.88%), Query Frame = 0


Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSSAPD PRPRLPWFEPSQAMT RIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 13  MESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYI 72

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLLTAP M ES
Sbjct: 73  VSLSSTPSCTCPDRITPCKHMLFVYIRALGVSLDDVCLWRRTLRPCQLNRLLTAPVMAES 132

Query: 121 LAEIRLRRVFHQQFFQVKERT-CVLIVDIEDGAACPVCLDDL-KDDRVVACTTCRNLVHE 171
           LAEI LRRVFHQQFFQVKERT CV IVDIEDG ACPVCLDDL KDDRVVACTTCRNLVH+
Sbjct: 133 LAEISLRRVFHQQFFQVKERTSCVPIVDIEDGTACPVCLDDLKKDDRVVACTTCRNLVHD 192

[Close]

BLAST of CmaCh12G002470 vs. NCBI nr
Match: KAG6585384.1 (Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 242.7 bits (618), Expect = 2.4e-60
Identity = 138/189 (73.02%), Postives = 142/189 (75.13%), Query Frame = 0


Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLR-LHTALILHSVLGATGNVYI 60
           MESVASTSSAPD PRPRLPWFEPSQAMT RIVRALHHHLR LH +     VLGATGNVYI
Sbjct: 1   MESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYI 60

Query: 61  VSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMTES 120
           VSLSSTP    P  + P                       RTLRPCQLNRLLTAP M ES
Sbjct: 61  VSLSSTPSCTCPDLITPCKHVLFVYIRALGVSLDDVCLWRRTLRPCQLNRLLTAPVMAES 120

Query: 121 LAEIRLRRVFHQQFFQVKERT-CVLIVDIEDGAACPVCLDDL-KDDRVVACTTCRNLVHE 161
           LAEI LRRVFHQQFFQVKERT CV IVDIEDGAACPVCLDDL KDDRVVACTTCRNLVH+
Sbjct: 121 LAEISLRRVFHQQFFQVKERTSCVPIVDIEDGAACPVCLDDLKKDDRVVACTTCRNLVHD 180

[Close]

BLAST of CmaCh12G002470 vs. TAIR 10
Match: AT5G11620.1 (SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related )

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-16
Identity = 74/225 (32.89%), Postives = 99/225 (44.00%), Query Frame = 0


Query: 1   MESVASTSSAPDHPRPRLPWFEPSQAMTDRIVRALHHHLRL---HTALILHSVLGATGNV 60
           MESV S   +P +   R      +Q + DRI+RAL H +RL     A   H VLGAT NV
Sbjct: 1   MESVGSNQISP-YVSNRDQRHFLAQPVADRILRALRHRIRLLHRPNAGTFH-VLGATCNV 60

Query: 61  YIVSLSSTP----PRALAPI----------------------RTLRPCQLNRLLTAPAMT 120
           Y V+L +TP    P    P                       R LR C L  L +AP   
Sbjct: 61  YTVTLMATPTCTCPDRKKPCKHILFVLIRVLGIPLDDKCLRQRRLRTCLLFHLFSAPTRP 120

Query: 121 ESLAEIRLRRVFHQQF----------FQVKERTCVLIVDI-EDGAACPVCLDDL------ 171
           + LA  RL++ F Q F                T  +  ++ E+ A CP+CLDD+      
Sbjct: 121 DCLASFRLQQRFLQLFPATTSQPGYTTNSSSSTSKMENEVDEEPATCPICLDDIIAIENV 180

The following BLAST results are available for this feature:

BLAST of CmaCh12G002470 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh12G002470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KP39	2.4e-82	83.16	LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 OS=Cucurbi...	[more]
A0A6J1GJ16	2.9e-72	76.65	mitogen-activated protein kinase kinase kinase 1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A5A7VCN6	3.6e-54	62.75	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S4DW96	3.6e-54	62.75	uncharacterized protein LOC103488177 OS=Cucumis melo OX=3656 GN=LOC103488177 PE=...	[more]
A0A6J1BPZ4	1.8e-53	61.00	uncharacterized protein LOC111004703 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]

BLAST of CmaCh12G002470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002495.1	4.9e-82	83.16	LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [Cucurbita...	[more]
XP_022951525.1	6.0e-72	76.65	mitogen-activated protein kinase kinase kinase 1 [Cucurbita moschata]	[more]
KAG7020300.1	3.6e-69	75.88	Mitogen-activated protein kinase kinase kinase 1, partial [Cucurbita argyrosperm...	[more]
XP_023537388.1	1.1e-68	75.38	mitogen-activated protein kinase kinase kinase 1-like [Cucurbita pepo subsp. pep...	[more]
KAG6585384.1	2.4e-60	73.02	Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmaCh12G002470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11620.1	1.3e-16	32.89	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 122..170 e-value: 4.1E-7 score: 31.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 126..168 e-value: 6.3E-7 score: 29.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 127..168 score: 8.697757
IPR039903	E3 ubiquitin-protein ligase Zswim2	PANTHER	PTHR21540	RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2	coord: 74..170
IPR039903	E3 ubiquitin-protein ligase Zswim2	PANTHER	PTHR21540	RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2	coord: 1..67
None	No IPR available	PANTHER	PTHR21540:SF4	SUBFAMILY NOT NAMED	coord: 1..67 coord: 74..170
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 119..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G002470.1	CmaCh12G002470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding