CmaCh08G011880.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGACTGAGATTCTACGACCTCAGGATTGTTTGAAAGGAAGGATCGGAGTTCCGCTGGTGGCCTTTTGTCGTCGCCGGAGTTCTTATGGAAACTCTGATTCGAATGTTTGTAACTATAATTCTAGATCCAACCGGAAATCAGCGGCTAGGTCGGAGCGGCCGGAGCAGCGGAAACGGTTTGTTTCGAATCAATCGGAGCCGTCGGTCTCGAAGAGATTGAGTTCCGAGGATTCGAAGACCAGGACGAATAGTTTGGTGATGGAAAATGTTACGATCTTGAGGCGTGGTGAATCGCTCGATTTGAAGACGAAGGGCGAAGCTCTGAAGAAGGAAGCTGATAATCTGGTCGTGTGTGGGACCGAGAGGTTGGGGCCGGCGCCGGAAATGGTACTGAAGCAGATCCGGATTGTCGACGTTAGGTATCCGATTATTGGGAAAGCCGATGTTTACGCCGGATCAGCGTTTTCGATGTCTCCATCTCCTAGTTCTCTTCCATTACCGTCGTTCTCGAAGAAGAAACAGGTATCCACCATCGTTGATGACTCGGCCACAAGAGATCTGAGGCGTTTGCTTCGTCTCGACGCATGA ATGGGGACTGAGATTCTACGACCTCAGGATTGTTTGAAAGGAAGGATCGGAGTTCCGCTGGTGGCCTTTTGTCGTCGCCGGAGTTCTTATGGAAACTCTGATTCGAATGTTTGTAACTATAATTCTAGATCCAACCGGAAATCAGCGGCTAGGTCGGAGCGGCCGGAGCAGCGGAAACGGTTTGTTTCGAATCAATCGGAGCCGTCGGTCTCGAAGAGATTGAGTTCCGAGGATTCGAAGACCAGGACGAATAGTTTGGTGATGGAAAATGTTACGATCTTGAGGCGTGGTGAATCGCTCGATTTGAAGACGAAGGGCGAAGCTCTGAAGAAGGAAGCTGATAATCTGGTCGTGTGTGGGACCGAGAGGTTGGGGCCGGCGCCGGAAATGGTACTGAAGCAGATCCGGATTGTCGACGTTAGGTATCCGATTATTGGGAAAGCCGATGTTTACGCCGGATCAGCGTTTTCGATGTCTCCATCTCCTAGTTCTCTTCCATTACCGTCGTTCTCGAAGAAGAAACAGGTATCCACCATCGTTGATGACTCGGCCACAAGAGATCTGAGGCGTTTGCTTCGTCTCGACGCATGA ATGGGGACTGAGATTCTACGACCTCAGGATTGTTTGAAAGGAAGGATCGGAGTTCCGCTGGTGGCCTTTTGTCGTCGCCGGAGTTCTTATGGAAACTCTGATTCGAATGTTTGTAACTATAATTCTAGATCCAACCGGAAATCAGCGGCTAGGTCGGAGCGGCCGGAGCAGCGGAAACGGTTTGTTTCGAATCAATCGGAGCCGTCGGTCTCGAAGAGATTGAGTTCCGAGGATTCGAAGACCAGGACGAATAGTTTGGTGATGGAAAATGTTACGATCTTGAGGCGTGGTGAATCGCTCGATTTGAAGACGAAGGGCGAAGCTCTGAAGAAGGAAGCTGATAATCTGGTCGTGTGTGGGACCGAGAGGTTGGGGCCGGCGCCGGAAATGGTACTGAAGCAGATCCGGATTGTCGACGTTAGGTATCCGATTATTGGGAAAGCCGATGTTTACGCCGGATCAGCGTTTTCGATGTCTCCATCTCCTAGTTCTCTTCCATTACCGTCGTTCTCGAAGAAGAAACAGGTATCCACCATCGTTGATGACTCGGCCACAAGAGATCTGAGGCGTTTGCTTCGTCTCGACGCATGA MGTEILRPQDCLKGRIGVPLVAFCRRRSSYGNSDSNVCNYNSRSNRKSAARSERPEQRKRFVSNQSEPSVSKRLSSEDSKTRTNSLVMENVTILRRGESLDLKTKGEALKKEADNLVVCGTERLGPAPEMVLKQIRIVDVRYPIIGKADVYAGSAFSMSPSPSSLPLPSFSKKKQVSTIVDDSATRDLRRLLRLDA Homology
BLAST of CmaCh08G011880.1 vs. ExPASy TrEMBL
Match: A0A6J1KIS0 (uncharacterized protein LOC111494337 OS=Cucurbita maxima OX=3661 GN=LOC111494337 PE=4 SV=1) HSP 1 Score: 371.7 bits (953), Expect = 1.9e-99 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. ExPASy TrEMBL
Match: A0A6J1EX01 (uncharacterized protein LOC111436920 OS=Cucurbita moschata OX=3662 GN=LOC111436920 PE=4 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 4.3e-96 Identity = 190/196 (96.94%), Postives = 192/196 (97.96%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. ExPASy TrEMBL
Match: A0A5A7SWA1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001050 PE=4 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 2.4e-78 Identity = 167/200 (83.50%), Postives = 171/200 (85.50%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. ExPASy TrEMBL
Match: A0A1S3C7J3 (uncharacterized protein LOC103497904 OS=Cucumis melo OX=3656 GN=LOC103497904 PE=4 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 2.4e-78 Identity = 167/200 (83.50%), Postives = 171/200 (85.50%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. ExPASy TrEMBL
Match: A0A0A0KCP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062315 PE=4 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 9.1e-78 Identity = 166/200 (83.00%), Postives = 170/200 (85.00%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. NCBI nr
Match: XP_023000029.1 (uncharacterized protein LOC111494337 [Cucurbita maxima]) HSP 1 Score: 371.7 bits (953), Expect = 3.9e-99 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. NCBI nr
Match: XP_023514741.1 (uncharacterized protein LOC111778959 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 360.9 bits (925), Expect = 6.9e-96 Identity = 192/196 (97.96%), Postives = 193/196 (98.47%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. NCBI nr
Match: XP_022930480.1 (uncharacterized protein LOC111436920 [Cucurbita moschata]) HSP 1 Score: 360.5 bits (924), Expect = 9.0e-96 Identity = 190/196 (96.94%), Postives = 192/196 (97.96%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. NCBI nr
Match: KAG6593932.1 (hypothetical protein SDJN03_13408, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026274.1 hypothetical protein SDJN02_12774, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 354.0 bits (907), Expect = 8.4e-94 Identity = 188/196 (95.92%), Postives = 190/196 (96.94%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. NCBI nr
Match: KAG6575030.1 (hypothetical protein SDJN03_25669, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013605.1 hypothetical protein SDJN02_23772, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 315.1 bits (806), Expect = 4.3e-82 Identity = 170/196 (86.73%), Postives = 173/196 (88.27%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. TAIR 10
Match: AT3G21570.1 (unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13 Identity = 68/199 (34.17%), Postives = 92/199 (46.23%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. TAIR 10
Match: AT4G32020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09 Identity = 63/206 (30.58%), Postives = 91/206 (44.17%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. TAIR 10
Match: AT4G02040.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.2 bits (108), Expect = 3.5e-05 Identity = 44/146 (30.14%), Postives = 70/146 (47.95%), Query Frame = 0
BLAST of CmaCh08G011880.1 vs. TAIR 10
Match: AT2G25250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32020.1); Has 30 Blast hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 5.9e-05 Identity = 42/141 (29.79%), Postives = 66/141 (46.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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