CmaCh08G005950.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCCAAATCAAGGTCGATGAATACCCTTACAAAACTAGAATCAACCACGGTCCAGATCATATCTAAGGTACTCAACAATGAGTCGCCGCCGGTGATGCCCGTTAGAATTATAACTAAGGAATTAAGAGTTACCATTCTTCTCCATAGATTTTGAAGTTCAAAAATTTCCTCCATAACATCAGGATACAACTCTGTGTTTTTCCTTCTCCAGTTTTTGAGAGTTTTTTTTGTTCTTTGCCATGAATTGAAGTCTGAAGAATGTTGTTGTTTAAGAAACCAGTCGGGAAACAAACCGGAGGATCCGTGCCGGTGTACCTCAATGTGTACGATCTGACCGCGATCAATGGCTACGCTTACTGGTTTGGCCTTGGTGTTTTCCATTCAGGAGTTCAAGGTCAGTAATGGCTGTAATGGCTTCCGTTTGATCTTCGTTTTCGAAGGCGTTTCGTGAGTTTTTCTTTTTCTGTTTTCTCTTAGCTGAAGCTCTTATGATGCTTTGCCGTTTCTTGTGATCTTGCTAATTCGTTGGTGCGGTGCGATGCGATGCGATATACTCCGTTTTCCATGTTTTGTGCTCTGAGGGAGAATGAATCGGAGAGTGTGGAAGATTAGATAATTTTATTGAAACGTGTGCTGTGTGACTCGAGAGATGCATCAGTATAGAAAAATTGTTCTGATTATTCTTACACTTCTTCTTCTTTTTCTTTCTTAATTTTTTTTTATAACGACATCGGCTCATTTATGGTATTTCTGTTCTCGATTATGCATTTTCTGTCAATTAGGCTACTAACTACATCGAACTTCGAACATTTTCCCATTCGGCAGACGAGTAAATTTTCCGACAAGTGGAAACCTCGTTTCTGATTTCTCTTTTATTTCCAGCTTTCCGTTTGAACCAGGTCGTTTTCTTTATTGTATACGATTTCGGTGCCGGTGAAGTTCATACGCTCAATCTGGCAGATCTTTCGGCTGTATTTGCTGAACTCGATTTGATGTTTTTGTATTGCAGTTCATGGTGTGGAATACGCATTTGGAGCTCACGAGTACTCAACAACAGGAATTTTTGAAGGGGTGCCGAAGCAATGCCATGGATTTAGATTTAGAAAGTCAGTTTTGATAGGCAAAACAGATATGAAACCAGCAGAGGTGAGAGCTTTAATGGAGGAACTTGCTCAAATCTACAAAGGAAATGCTTACAATTTAATCACCAAAAATTGCAACCATTTTTGCAACGACGCTTGTGTTAAACTCACAGAAAATTCCATCCCAAATTGGGTTAATCGCCTTGCTAGAATTGGTAAGAAAACACCTCTTTCTTTTTATCCACCTGTGGCTTGCTAGAACTAGAATTTGATTGGAAGTTCATTTAATGGGCTAGCATAATTTTTCTGATGAATACGAACACAATCAGATTAGCATTTGTGAATCTGGAGTTCTTTGGTAGCAAGATGATCTTGTTTGTTCTGGTTAAGTTTCTTGTGAGCTTGCTTGATTCTGTGCTACACCATTTTGGATCAATGTGTGCTGTTTTTTCTTTTCTTTTTCAGGCTTTCTTTGCAATTGTGTTCTACCAGTGACCTTCAATTCCACCAGAATCAGGCACCACCACAGAATTGAACACAAGGTTGTAACCATGGAAACAAAGAAGGATTTAACAAGTCAATCCATCAAAACTCCCAATTCTAATCCCTCTTCTTCTGCAACTTCTTCTCCTTCCTCGACGTTTCGTCGAGGAAGAAGCCGAACAAGACGAGCTCCTCCTCCATCTTCTCCATTGTTTTCTCATTCTTCATCTTCCTGATATATGGACATCACAGCTCCTAGCTATCTTTTCCTTTATGTCTTCTTCCTTGTGATCTTGGAATATCACTCTCAATCAAAAGCATTCACTTATATGCTTTGGATTCCCTTGAAATGTTCTTTTTTTCCCTCTTGTTCTTTTTCCCCTTCTTTCTCTTTCTTTTTGCATTCATCATCTTTGAATACTCCAAAGGAACAATTGCAAGTTGTAAAAGTTGATATTATTGTGAACTTCAAATCCCAATTCATATTTTCATAATCTGAACAAACTGTAGATTTTTTGTTA TTCCAAATCAAGGTCGATGAATACCCTTACAAAACTAGAATCAACCACGGTCCAGATCATATCTAAGGTACTCAACAATGAGTCGCCGCCGGTGATGCCCGTTAGAATTATAACTAAGGAATTAAGAGTTACCATTCTTCTCCATAGATTTTGAAGTTCAAAAATTTCCTCCATAACATCAGGATACAACTCTGTGTTTTTCCTTCTCCAGTTTTTGAGAGTTTTTTTTGTTCTTTGCCATGAATTGAAGTCTGAAGAATGTTGTTGTTTAAGAAACCAGTCGGGAAACAAACCGGAGGATCCGTGCCGGTGTACCTCAATGTGTACGATCTGACCGCGATCAATGGCTACGCTTACTGGTTTGGCCTTGGTGTTTTCCATTCAGGAGTTCAAGTTCATGGTGTGGAATACGCATTTGGAGCTCACGAGTACTCAACAACAGGAATTTTTGAAGGGGTGCCGAAGCAATGCCATGGATTTAGATTTAGAAAGTCAGTTTTGATAGGCAAAACAGATATGAAACCAGCAGAGGTGAGAGCTTTAATGGAGGAACTTGCTCAAATCTACAAAGGAAATGCTTACAATTTAATCACCAAAAATTGCAACCATTTTTGCAACGACGCTTGTGTTAAACTCACAGAAAATTCCATCCCAAATTGGGTTAATCGCCTTGCTAGAATTGGCTTTCTTTGCAATTGTGTTCTACCAGTGACCTTCAATTCCACCAGAATCAGGCACCACCACAGAATTGAACACAAGGTTGTAACCATGGAAACAAAGAAGGATTTAACAAGTCAATCCATCAAAACTCCCAATTCTAATCCCTCTTCTTCTGCAACTTCTTCTCCTTCCTCGACGTTTCGTCGAGGAAGAAGCCGAACAAGACGAGCTCCTCCTCCATCTTCTCCATTGTTTTCTCATTCTTCATCTTCCTGATATATGGACATCACAGCTCCTAGCTATCTTTTCCTTTATGTCTTCTTCCTTGTGATCTTGGAATATCACTCTCAATCAAAAGCATTCACTTATATGCTTTGGATTCCCTTGAAATGTTCTTTTTTTCCCTCTTGTTCTTTTTCCCCTTCTTTCTCTTTCTTTTTGCATTCATCATCTTTGAATACTCCAAAGGAACAATTGCAAGTTGTAAAAGTTGATATTATTGTGAACTTCAAATCCCAATTCATATTTTCATAATCTGAACAAACTGTAGATTTTTTGTTA ATGTTGTTGTTTAAGAAACCAGTCGGGAAACAAACCGGAGGATCCGTGCCGGTGTACCTCAATGTGTACGATCTGACCGCGATCAATGGCTACGCTTACTGGTTTGGCCTTGGTGTTTTCCATTCAGGAGTTCAAGTTCATGGTGTGGAATACGCATTTGGAGCTCACGAGTACTCAACAACAGGAATTTTTGAAGGGGTGCCGAAGCAATGCCATGGATTTAGATTTAGAAAGTCAGTTTTGATAGGCAAAACAGATATGAAACCAGCAGAGGTGAGAGCTTTAATGGAGGAACTTGCTCAAATCTACAAAGGAAATGCTTACAATTTAATCACCAAAAATTGCAACCATTTTTGCAACGACGCTTGTGTTAAACTCACAGAAAATTCCATCCCAAATTGGGTTAATCGCCTTGCTAGAATTGGCTTTCTTTGCAATTGTGTTCTACCAGTGACCTTCAATTCCACCAGAATCAGGCACCACCACAGAATTGAACACAAGGTTGTAACCATGGAAACAAAGAAGGATTTAACAAGTCAATCCATCAAAACTCCCAATTCTAATCCCTCTTCTTCTGCAACTTCTTCTCCTTCCTCGACGTTTCGTCGAGGAAGAAGCCGAACAAGACGAGCTCCTCCTCCATCTTCTCCATTGTTTTCTCATTCTTCATCTTCCTGA MLLFKKPVGKQTGGSVPVYLNVYDLTAINGYAYWFGLGVFHSGVQVHGVEYAFGAHEYSTTGIFEGVPKQCHGFRFRKSVLIGKTDMKPAEVRALMEELAQIYKGNAYNLITKNCNHFCNDACVKLTENSIPNWVNRLARIGFLCNCVLPVTFNSTRIRHHHRIEHKVVTMETKKDLTSQSIKTPNSNPSSSATSSPSSTFRRGRSRTRRAPPPSSPLFSHSSSS Homology
BLAST of CmaCh08G005950.1 vs. ExPASy Swiss-Prot
Match: Q93VG8 (DeSI-like protein At4g17486 OS=Arabidopsis thaliana OX=3702 GN=At4g17486 PE=2 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 4.1e-47 Identity = 77/142 (54.23%), Postives = 106/142 (74.65%), Query Frame = 0
BLAST of CmaCh08G005950.1 vs. ExPASy Swiss-Prot
Match: H2KZK4 (Desumoylating isopeptidase 1 homolog OS=Caenorhabditis elegans OX=6239 GN=F36D4.5 PE=2 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 5.6e-28 Identity = 58/139 (41.73%), Postives = 91/139 (65.47%), Query Frame = 0
BLAST of CmaCh08G005950.1 vs. ExPASy Swiss-Prot
Match: Q6DC39 (Deubiquitinase DESI2 OS=Danio rerio OX=7955 GN=desi2 PE=2 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 3.6e-27 Identity = 59/136 (43.38%), Postives = 86/136 (63.24%), Query Frame = 0
BLAST of CmaCh08G005950.1 vs. ExPASy Swiss-Prot
Match: Q5PQ09 (Deubiquitinase DESI2 OS=Xenopus laevis OX=8355 GN=desi2 PE=2 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 3.6e-27 Identity = 61/140 (43.57%), Postives = 87/140 (62.14%), Query Frame = 0
BLAST of CmaCh08G005950.1 vs. ExPASy Swiss-Prot
Match: Q9BSY9 (Deubiquitinase DESI2 OS=Homo sapiens OX=9606 GN=DESI2 PE=1 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.1e-26 Identity = 62/144 (43.06%), Postives = 89/144 (61.81%), Query Frame = 0
BLAST of CmaCh08G005950.1 vs. TAIR 10
Match: AT1G80690.1 (PPPDE putative thiol peptidase family protein ) HSP 1 Score: 266.9 bits (681), Expect = 1.4e-71 Identity = 139/214 (64.95%), Postives = 165/214 (77.10%), Query Frame = 0
BLAST of CmaCh08G005950.1 vs. TAIR 10
Match: AT5G25170.1 (PPPDE putative thiol peptidase family protein ) HSP 1 Score: 252.3 bits (643), Expect = 3.7e-67 Identity = 127/206 (61.65%), Postives = 150/206 (72.82%), Query Frame = 0
BLAST of CmaCh08G005950.1 vs. TAIR 10
Match: AT2G25190.1 (PPPDE putative thiol peptidase family protein ) HSP 1 Score: 234.2 bits (596), Expect = 1.0e-61 Identity = 129/226 (57.08%), Postives = 157/226 (69.47%), Query Frame = 0
BLAST of CmaCh08G005950.1 vs. TAIR 10
Match: AT4G31980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). ) HSP 1 Score: 223.8 bits (569), Expect = 1.4e-58 Identity = 114/216 (52.78%), Postives = 153/216 (70.83%), Query Frame = 0
BLAST of CmaCh08G005950.1 vs. TAIR 10
Match: AT1G47740.1 (PPPDE putative thiol peptidase family protein ) HSP 1 Score: 203.8 bits (517), Expect = 1.5e-52 Identity = 108/212 (50.94%), Postives = 137/212 (64.62%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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