CmaCh06G017590.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G017590.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Tubulin alpha chain
Location	Cma_Chr06: 10736407 .. 10739530 (+)
Sequence length	1827
RNA-Seq Expression	CmaCh06G017590.1
Synteny	CmaCh06G017590.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAACCAAAATTAAGGAGACAAATAACAACTTCATTTCGTTTCATTCCAAATCCAATTCCCCTTTTACCCATCAATTGATTGATATTTATTCAATCAACTTCCCCCTCTGCGACTCGGCAATCCCAATCTGCGGCATCTTCCCCCTCTTCCCATTTCTCTCTCTGTTTTCTCTCGATCGTTCGCCCCTATTCGAGAGAGATCGGAAGCGGATTCGGGATGAGGGAAATCATCAGTCTTCACATTGGTCAAGCTGGGATTCAGGTCGGCAATTCTTGCTGGGAGCTTTACTGCCTCGAGCATGGCATCCAGCCTGATGGTTTGATGCCCAGGTTTGTATTTCGATTTCTTGATTTGGGTTTCATTTTGAATGTCGATCGATATCAACCACGCCCCACTTCTGATCCTCGATTACTTTTTTACTAGATAAATTCAATTTTCCCTGTTGTGATTCTCTATGGTAGGTGGGAGTGGGAGTGGGACTGAATTGAATTCGTGAATTTCGTTTACGTCTTTCTTTTGGTCTTTGAATTTTTGTGGCATTTTCCGCATCTGTTTATGCGTCAAGTTCTTGTGAGATCAGACGAGGAATCTGGACATGGGTTTAAATTTTAATTGGATGTACCTATATGGATCTCCTTTTCAAATTGGAGTAACAAGTCTGAGCTCGTAGGAATTGAAAATTCGCTTCGAGTTTAATCCAATTGATTTAATTATCCTTTTCTCCGGGAATATCAAGTCGAATGGCCAAACTTTTGGGCTTTTTTATCCTCAGATTGTTTGCTGTAATGTCACTCTTAAGATGGGAATAGATGCCTCGATCCAATTCCTATATCTGTTCAAGAAAATAAGTTCTTGGGGTCTTCTCGGAGGTCATTTTGGTTGAAACAATATTTACTGAATTTTTGGATTGGATCTTTTGTTTATGTGGCGTCTTTGATAGTGGGTGGCATAAAAAGTCGTTTTATTTACATACCCTTTCAAGGTCCAAGCATAATGACCCATCTCGATGAATTAGAACTCTTATTCTAATGATGTTTGATTACCTGCGTATGCTGCAGTGACACCTCGGTTGGTGTAGCACACGATGCTTTCAACACATTTTTCAGCGAGACTGGTTCGGGCAAGCACGTTCCTAGAGCTATATTTGTGGATCTCGAACCAACTGTTATTGATGAAGTGAGGACTGGGACATATAGACAGCTTTTCCACCCGGAACAGCTCATATCTGGTAAAGAAGATGCTGCAAATAATTTTGCCCGAGGACATTATACAGGTACATGTATTTCCATTTCGACAAGTTTTTCTAGAGTTTCCTTTTTCACTGTGGTCATTCATCACTAAACCTACTTTATTGTGTCATTTCCCAGTGGGTAGGGAAATAGTTGATCTGTGCCTTGACCGAGTTCGAAAACTAGCCGACAATTGTACTGGTTTGCAAGGGTTCTTAGTGTTTAATGCTGTTGGTGGTGGCACTGGATCTGGTTTGGGGTCGTTACTTCTGGAACGCTTGTCCGTGGATTATGGAAAGAAGTCAAAGCTTGGATTTTCCATATATCCTTCTCCACAGGTACACAAATGATAGACGCTTTGGTATCATAGACCACATATTTTTCATTGATGAAGCGTATATGAAAAGGCCACTTATATTTGTCACAATTTTTTCTCAATGAAATTTTGTTTCTTGTCAGATAAAAGATTAAAGAAAAAAAAAGAATCTGTTTCTGCTCAGTTGACAATATTTTTTATGCAAACCTTTAAATCTTTCTTACTGATCATCAAGATTCAAGTCTATTATTTAATGCTACAATATCTGTATGCAGGTATCCACTGCCGTGGTCGAACCATACAACAGTGTGCTTTCCACTCATTCTCTGCTAGAACACACAGATGTCGCTGTGCTTCTGGACAACGAAGCCATTTATGATATCTGCAGGAGATCATTGGATATTGAAAGACCAACTTACACCAACTTGAACCGCTTGATATCCCAAGTTATCTCTTCTTTAACCACTTCCTTGAGGTTTGATGGTGCTATCAACGTGGATATAACCGAGTTTCAAACTAACCTTGTACCTTATCCACGTATTCATTTCATGCTCTCTTCTTATGCTCCTGTGATCTCTTCTGCAAAAGCTTACCATGAGCAGCTATCTGTTCCCGAAATCACCAATGCCGTATTTGATCCTTCAAGCATGATGGTCAAATGCGACCCAAGGCACGGAAAGTACATGGCATGCTGTTTGATGTATAGAGGAGATGTTGTACCCAAGGATGTGAATGCTGCTGTTGCTACCATCAAAACGAAGAGAACAGTTCAATTTGTTGACTGGTGAGTTAATTGCTCAGGGTTGTTAGAATTATGAAACCAATGATATTTGTGTTATCAAAGGGTCCATATCTTAATGCTGAAGTTGTTTAGAAGTCTTGGAGGCAAATTTTTCAATCTCATCCTGAACTAAACTTTCCCAGAGGATCTTAGTTTGGTTTAGTTAATTGAAATTTCTAAACGTTATTGATTTGAGTTAAACCTGTGGCATGGGAATTTTTCAGGTGTCCTACTGGCTTCAAATGTGGTATTAACTATCAACCCCCAAGTGTTGTTCCTGGGGGCGATCTTGCGAAGGTGCAGCGAGCTGTTTGTATGATAAGTAATAGCACAGCCGTGGCCGAGGTCTTTTCAAGAATCGATCACAAATTTGATCTGATGTATGCTAAGCGGGCATTCGTACATTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAATTTTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAAAAGGACTACGAGGAAGTTGGTGCGGAGGATGTGGATGAAGAGGAGGAAGGGGAAGATTATTAAACCAGGAGTGATAAATAGCTGGTGGTGTCCTTTTTCATCGTTTTCATGTTTCTTTGTTATCAAGTCCAAGCTGTGCAATGTTCCATACATGTTGACGAGTGGTTTCTGTTTTTATGATTGATTTCAAAATTTACAGTGTTAGAACTACTTGCAAATTTTTTATTACGAGTGAAGGTCTTCTTTCTAGCCCCCCCCAATTAAAGCATTTCCTTGGAAGGAATTGAGAAAATAATTAAGTTTTATATGGGTACCTCTTAAA

mRNA sequence

TAAAACCAAAATTAAGGAGACAAATAACAACTTCATTTCGTTTCATTCCAAATCCAATTCCCCTTTTACCCATCAATTGATTGATATTTATTCAATCAACTTCCCCCTCTGCGACTCGGCAATCCCAATCTGCGGCATCTTCCCCCTCTTCCCATTTCTCTCTCTGTTTTCTCTCGATCGTTCGCCCCTATTCGAGAGAGATCGGAAGCGGATTCGGGATGAGGGAAATCATCAGTCTTCACATTGGTCAAGCTGGGATTCAGGTCGGCAATTCTTGCTGGGAGCTTTACTGCCTCGAGCATGGCATCCAGCCTGATGGTTTGATGCCCAGTGACACCTCGGTTGGTGTAGCACACGATGCTTTCAACACATTTTTCAGCGAGACTGGTTCGGGCAAGCACGTTCCTAGAGCTATATTTGTGGATCTCGAACCAACTGTTATTGATGAAGTGAGGACTGGGACATATAGACAGCTTTTCCACCCGGAACAGCTCATATCTGGTAAAGAAGATGCTGCAAATAATTTTGCCCGAGGACATTATACAGTGGGTAGGGAAATAGTTGATCTGTGCCTTGACCGAGTTCGAAAACTAGCCGACAATTGTACTGGTTTGCAAGGGTTCTTAGTGTTTAATGCTGTTGGTGGTGGCACTGGATCTGGTTTGGGGTCGTTACTTCTGGAACGCTTGTCCGTGGATTATGGAAAGAAGTCAAAGCTTGGATTTTCCATATATCCTTCTCCACAGGTATCCACTGCCGTGGTCGAACCATACAACAGTGTGCTTTCCACTCATTCTCTGCTAGAACACACAGATGTCGCTGTGCTTCTGGACAACGAAGCCATTTATGATATCTGCAGGAGATCATTGGATATTGAAAGACCAACTTACACCAACTTGAACCGCTTGATATCCCAAGTTATCTCTTCTTTAACCACTTCCTTGAGGTTTGATGGTGCTATCAACGTGGATATAACCGAGTTTCAAACTAACCTTGTACCTTATCCACGTATTCATTTCATGCTCTCTTCTTATGCTCCTGTGATCTCTTCTGCAAAAGCTTACCATGAGCAGCTATCTGTTCCCGAAATCACCAATGCCGTATTTGATCCTTCAAGCATGATGGTCAAATGCGACCCAAGGCACGGAAAGTACATGGCATGCTGTTTGATGTATAGAGGAGATGTTGTACCCAAGGATGTGAATGCTGCTGTTGCTACCATCAAAACGAAGAGAACAGTTCAATTTGTTGACTGGTGTCCTACTGGCTTCAAATGTGGTATTAACTATCAACCCCCAAGTGTTGTTCCTGGGGGCGATCTTGCGAAGGTGCAGCGAGCTGTTTGTATGATAAGTAATAGCACAGCCGTGGCCGAGGTCTTTTCAAGAATCGATCACAAATTTGATCTGATGTATGCTAAGCGGGCATTCGTACATTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAATTTTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAAAAGGACTACGAGGAAGTTGGTGCGGAGGATGTGGATGAAGAGGAGGAAGGGGAAGATTATTAAACCAGGAGTGATAAATAGCTGGTGGTGTCCTTTTTCATCGTTTTCATGTTTCTTTGTTATCAAGTCCAAGCTGTGCAATGTTCCATACATGTTGACGAGTGGTTTCTGTTTTTATGATTGATTTCAAAATTTACAGTGTTAGAACTACTTGCAAATTTTTTATTACGAGTGAAGGTCTTCTTTCTAGCCCCCCCCAATTAAAGCATTTCCTTGGAAGGAATTGAGAAAATAATTAAGTTTTATATGGGTACCTCTTAAA

Coding sequence (CDS)

ATGAGGGAAATCATCAGTCTTCACATTGGTCAAGCTGGGATTCAGGTCGGCAATTCTTGCTGGGAGCTTTACTGCCTCGAGCATGGCATCCAGCCTGATGGTTTGATGCCCAGTGACACCTCGGTTGGTGTAGCACACGATGCTTTCAACACATTTTTCAGCGAGACTGGTTCGGGCAAGCACGTTCCTAGAGCTATATTTGTGGATCTCGAACCAACTGTTATTGATGAAGTGAGGACTGGGACATATAGACAGCTTTTCCACCCGGAACAGCTCATATCTGGTAAAGAAGATGCTGCAAATAATTTTGCCCGAGGACATTATACAGTGGGTAGGGAAATAGTTGATCTGTGCCTTGACCGAGTTCGAAAACTAGCCGACAATTGTACTGGTTTGCAAGGGTTCTTAGTGTTTAATGCTGTTGGTGGTGGCACTGGATCTGGTTTGGGGTCGTTACTTCTGGAACGCTTGTCCGTGGATTATGGAAAGAAGTCAAAGCTTGGATTTTCCATATATCCTTCTCCACAGGTATCCACTGCCGTGGTCGAACCATACAACAGTGTGCTTTCCACTCATTCTCTGCTAGAACACACAGATGTCGCTGTGCTTCTGGACAACGAAGCCATTTATGATATCTGCAGGAGATCATTGGATATTGAAAGACCAACTTACACCAACTTGAACCGCTTGATATCCCAAGTTATCTCTTCTTTAACCACTTCCTTGAGGTTTGATGGTGCTATCAACGTGGATATAACCGAGTTTCAAACTAACCTTGTACCTTATCCACGTATTCATTTCATGCTCTCTTCTTATGCTCCTGTGATCTCTTCTGCAAAAGCTTACCATGAGCAGCTATCTGTTCCCGAAATCACCAATGCCGTATTTGATCCTTCAAGCATGATGGTCAAATGCGACCCAAGGCACGGAAAGTACATGGCATGCTGTTTGATGTATAGAGGAGATGTTGTACCCAAGGATGTGAATGCTGCTGTTGCTACCATCAAAACGAAGAGAACAGTTCAATTTGTTGACTGGTGTCCTACTGGCTTCAAATGTGGTATTAACTATCAACCCCCAAGTGTTGTTCCTGGGGGCGATCTTGCGAAGGTGCAGCGAGCTGTTTGTATGATAAGTAATAGCACAGCCGTGGCCGAGGTCTTTTCAAGAATCGATCACAAATTTGATCTGATGTATGCTAAGCGGGCATTCGTACATTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAATTTTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAAAAGGACTACGAGGAAGTTGGTGCGGAGGATGTGGATGAAGAGGAGGAAGGGGAAGATTATTAA

Protein sequence

MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY

Homology

[Close]

BLAST of CmaCh06G017590.1 vs. ExPASy Swiss-Prot
Match: Q56WH1 (Tubulin alpha-3 chain OS=Arabidopsis thaliana OX=3702 GN=TUBA3 PE=1 SV=2)

HSP 1 Score: 881.3 bits (2276), Expect = 4.5e-255
Identity = 431/450 (95.78%), Postives = 445/450 (98.89%), Query Frame = 0


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+HIGQAGIQVGNSCWELYCLEHGIQPDG+MPSDT+VGVAHDAFNTFFSETG+GK
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRA+FVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120

Query: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTA 180
           RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF+IYPSPQVSTA
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+ISSLTT
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSS 300
           SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS+AKAYHEQLSVPEITNAVF+P+S
Sbjct: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPAS 300

Query: 301 MMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MM KCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTVQFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPP 360

Query: 361 SVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           +VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAE-DVDEEEEGEDY 450
           AREDLAALEKDYEEVGAE   DEE+EGEDY
Sbjct: 421 AREDLAALEKDYEEVGAEGGDDEEDEGEDY 450

[Close]

BLAST of CmaCh06G017590.1 vs. ExPASy Swiss-Prot
Match: B9DHQ0 (Tubulin alpha-5 chain OS=Arabidopsis thaliana OX=3702 GN=TUBA5 PE=1 SV=2)

HSP 1 Score: 881.3 bits (2276), Expect = 4.5e-255
Identity = 431/450 (95.78%), Postives = 445/450 (98.89%), Query Frame = 0


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+HIGQAGIQVGNSCWELYCLEHGIQPDG+MPSDT+VGVAHDAFNTFFSETG+GK
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRA+FVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120

Query: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTA 180
           RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF+IYPSPQVSTA
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+ISSLTT
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSS 300
           SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS+AKAYHEQLSVPEITNAVF+P+S
Sbjct: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPAS 300

Query: 301 MMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MM KCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTVQFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPP 360

Query: 361 SVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           +VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAE-DVDEEEEGEDY 450
           AREDLAALEKDYEEVGAE   DEE+EGEDY
Sbjct: 421 AREDLAALEKDYEEVGAEGGDDEEDEGEDY 450

[Close]

BLAST of CmaCh06G017590.1 vs. ExPASy Swiss-Prot
Match: O22349 (Tubulin alpha-3 chain OS=Eleusine indica OX=29674 GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 880.6 bits (2274), Expect = 7.7e-255
Identity = 431/450 (95.78%), Postives = 444/450 (98.67%), Query Frame = 0


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+HIGQAGIQVGN+CWELYCLEHGI+PDG MPSDTSVGVAHDAFNTFFSETGSGK
Sbjct: 1   MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRAIFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLD
Sbjct: 61  HVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120

Query: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTA 180
           RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF+IYPSPQVSTA
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+ISSLTT
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSS 300
           SLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KAYHEQLSVPEITNAVF+PSS
Sbjct: 241 SLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300

Query: 301 MMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360

Query: 361 SVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           SVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 SVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAEDVDEE-EEGEDY 450
           AREDLAALEKDYEEVGAE  D+E +EGEDY
Sbjct: 421 AREDLAALEKDYEEVGAEGADDEGDEGEDY 450

[Close]

BLAST of CmaCh06G017590.1 vs. ExPASy Swiss-Prot
Match: P33627 (Tubulin alpha-6 chain OS=Zea mays OX=4577 GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 879.4 bits (2271), Expect = 1.7e-254
Identity = 430/450 (95.56%), Postives = 444/450 (98.67%), Query Frame = 0


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+HIGQAGIQVGN+CWELYCLEHGI+PDG MPSDTSVGVAHDAFNTFFSETGSGK
Sbjct: 1   MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRAIFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLD
Sbjct: 61  HVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120

Query: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTA 180
           RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF+IYPSPQVSTA
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+ISSLTT
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSS 300
           SLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KAYHEQLSVPEITNAVF+PSS
Sbjct: 241 SLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300

Query: 301 MMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360

Query: 361 SVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           SVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 SVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAEDVDEE-EEGEDY 450
           AREDLAALEKDYEEVGAE  D+E +EG+DY
Sbjct: 421 AREDLAALEKDYEEVGAEGADDEGDEGDDY 450

[Close]

BLAST of CmaCh06G017590.1 vs. ExPASy Swiss-Prot
Match: P28752 (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 877.1 bits (2265), Expect = 8.6e-254
Identity = 428/450 (95.11%), Postives = 444/450 (98.67%), Query Frame = 0


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+HIGQAGIQVGN+CWELYCLEHGI+PDG MPSDT+VGVAHDAFNTFFSETG+GK
Sbjct: 1   MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRAIFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLD
Sbjct: 61  HVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120

Query: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTA 180
           RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF+IYPSPQVSTA
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+ISSLTT
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSS 300
           SLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KAYHEQLSVPEITNAVF+PSS
Sbjct: 241 SLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300

Query: 301 MMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360

Query: 361 SVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           SVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 SVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAEDVDEE-EEGEDY 450
           AREDLAALEKDYEEVGAE  D+E ++GEDY
Sbjct: 421 AREDLAALEKDYEEVGAEGADDENDDGEDY 450

[Close]

BLAST of CmaCh06G017590.1 vs. TAIR 10
Match: AT5G19770.1 (tubulin alpha-3 )

HSP 1 Score: 881.3 bits (2276), Expect = 3.2e-256
Identity = 431/450 (95.78%), Postives = 445/450 (98.89%), Query Frame = 0


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+HIGQAGIQVGNSCWELYCLEHGIQPDG+MPSDT+VGVAHDAFNTFFSETG+GK
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRA+FVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120

Query: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTA 180
           RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF+IYPSPQVSTA
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+ISSLTT
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSS 300
           SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS+AKAYHEQLSVPEITNAVF+P+S
Sbjct: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPAS 300

Query: 301 MMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MM KCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTVQFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPP 360

Query: 361 SVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           +VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAE-DVDEEEEGEDY 450
           AREDLAALEKDYEEVGAE   DEE+EGEDY
Sbjct: 421 AREDLAALEKDYEEVGAEGGDDEEDEGEDY 450

[Close]

BLAST of CmaCh06G017590.1 vs. TAIR 10
Match: AT5G19780.1 (tubulin alpha-5 )

HSP 1 Score: 881.3 bits (2276), Expect = 3.2e-256
Identity = 431/450 (95.78%), Postives = 445/450 (98.89%), Query Frame = 0


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+HIGQAGIQVGNSCWELYCLEHGIQPDG+MPSDT+VGVAHDAFNTFFSETG+GK
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRA+FVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120

Query: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTA 180
           RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF+IYPSPQVSTA
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+ISSLTT
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSS 300
           SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS+AKAYHEQLSVPEITNAVF+P+S
Sbjct: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPAS 300

Query: 301 MMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MM KCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTVQFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPP 360

Query: 361 SVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           +VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAE-DVDEEEEGEDY 450
           AREDLAALEKDYEEVGAE   DEE+EGEDY
Sbjct: 421 AREDLAALEKDYEEVGAEGGDDEEDEGEDY 450

[Close]

BLAST of CmaCh06G017590.1 vs. TAIR 10
Match: AT1G64740.1 (alpha-1 tubulin )

HSP 1 Score: 850.1 bits (2195), Expect = 8.0e-247
Identity = 412/450 (91.56%), Postives = 433/450 (96.22%), Query Frame = 0


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MREIIS+HIGQAGIQVGNSCWELYCLEHGIQPDG MPSD++VG  HDAFNTFFSET SG+
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRA+F+DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVD CL+
Sbjct: 61  HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLE 120

Query: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTA 180
           R+RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD+GKKSKLGF+IYPSPQVSTA
Sbjct: 121 RLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
           VVEPYNSVLSTHSLLEHTDV VLLDNEAIYDICRRSLDIERPTY+NLNRLISQ ISSLTT
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLNRLISQTISSLTT 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSS 300
           SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQ SVPEIT +VF+PS+
Sbjct: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSN 300

Query: 301 MMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MM KCDPRHGKYMACCLMYRGDVVPKDVN AVA IK KRT+QFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPP 360

Query: 361 SVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           SVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 SVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAEDV-DEEEEGEDY 450
           AREDLAALEKDYEEVG E   D++EEG++Y
Sbjct: 421 AREDLAALEKDYEEVGGEGAEDDDEEGDEY 450

[Close]

BLAST of CmaCh06G017590.1 vs. TAIR 10
Match: AT1G04820.1 (tubulin alpha-4 chain )

HSP 1 Score: 845.1 bits (2182), Expect = 2.6e-245
Identity = 407/450 (90.44%), Postives = 434/450 (96.44%), Query Frame = 0


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MRE IS+HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD +VG   DAFNTFFSETG+GK
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRA+FVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120

Query: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTA 180
           R+RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF++YPSPQVST+
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
           VVEPYNSVLSTHSLLEHTDV++LLDNEAIYDICRRSL IERPTYTNLNRL+SQVISSLT 
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTA 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSS 300
           SLRFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KA+HEQLSV EITN+ F+P+S
Sbjct: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPAS 300

Query: 301 MMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MM KCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRT+QFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPP 360

Query: 361 SVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           +VVPGGDLAKVQRAVCMISNST+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAE-DVDEEEEGEDY 450
           AREDLAALEKDYEEVGAE   DE++EGE+Y
Sbjct: 421 AREDLAALEKDYEEVGAEGGDDEDDEGEEY 450

[Close]

BLAST of CmaCh06G017590.1 vs. TAIR 10
Match: AT1G50010.1 (tubulin alpha-2 chain )

HSP 1 Score: 845.1 bits (2182), Expect = 2.6e-245
Identity = 407/450 (90.44%), Postives = 434/450 (96.44%), Query Frame = 0


Query: 1   MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGK 60
           MRE IS+HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD +VG   DAFNTFFSETG+GK
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60

Query: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRA+FVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120

Query: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTA 180
           R+RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF++YPSPQVST+
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
           VVEPYNSVLSTHSLLEHTDV++LLDNEAIYDICRRSL IERPTYTNLNRL+SQVISSLT 
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTA 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSS 300
           SLRFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAPVIS+ KA+HEQLSV EITN+ F+P+S
Sbjct: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPAS 300

Query: 301 MMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MM KCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRT+QFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPP 360

Query: 361 SVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           +VVPGGDLAKVQRAVCMISNST+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAE-DVDEEEEGEDY 450
           AREDLAALEKDYEEVGAE   DE++EGE+Y
Sbjct: 421 AREDLAALEKDYEEVGAEGGDDEDDEGEEY 450

The following BLAST results are available for this feature:

BLAST of CmaCh06G017590.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56WH1	4.5e-255	95.78	Tubulin alpha-3 chain OS=Arabidopsis thaliana OX=3702 GN=TUBA3 PE=1 SV=2	[more]
B9DHQ0	4.5e-255	95.78	Tubulin alpha-5 chain OS=Arabidopsis thaliana OX=3702 GN=TUBA5 PE=1 SV=2	[more]
O22349	7.7e-255	95.78	Tubulin alpha-3 chain OS=Eleusine indica OX=29674 GN=TUBA3 PE=2 SV=1	[more]
P33627	1.7e-254	95.56	Tubulin alpha-6 chain OS=Zea mays OX=4577 GN=TUBA6 PE=2 SV=1	[more]
P28752	8.6e-254	95.11	Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBA1 PE=1 SV=...	[more]

BLAST of CmaCh06G017590.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19770.1	3.2e-256	95.78	tubulin alpha-3	[more]
AT5G19780.1	3.2e-256	95.78	tubulin alpha-5	[more]
AT1G64740.1	8.0e-247	91.56	alpha-1 tubulin	[more]
AT1G04820.1	2.6e-245	90.44	tubulin alpha-4 chain	[more]
AT1G50010.1	2.6e-245	90.44	tubulin alpha-2 chain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 418..445
None	No IPR available	PANTHER	PTHR11588:SF382	TUBULIN ALPHA CHAIN	coord: 1..448
None	No IPR available	CDD	cd02186	alpha_tubulin	coord: 2..435 e-value: 0.0 score: 886.112
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 153..174 score: 49.54 coord: 10..30 score: 64.79 coord: 380..408 score: 58.62 coord: 134..152 score: 66.84 coord: 95..106 score: 64.97 coord: 178..191 score: 71.97 coord: 192..212 score: 61.21 coord: 53..72 score: 66.02 coord: 108..132 score: 58.79
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 1..448
IPR002452	Alpha tubulin	PRINTS	PR01162	ALPHATUBULIN	coord: 88..101 score: 94.12 coord: 161..172 score: 81.72 coord: 360..379 score: 86.34 coord: 422..438 score: 90.81 coord: 385..401 score: 83.59 coord: 18..33 score: 90.65 coord: 274..289 score: 75.26 coord: 214..226 score: 86.36 coord: 148..160 score: 86.23 coord: 45..58 score: 72.57 coord: 347..360 score: 93.1 coord: 321..342 score: 87.24 coord: 120..128 score: 80.77
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	SMART	SM00865	Tubulin_C_4	coord: 248..393 e-value: 1.2E-54 score: 197.5
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	PFAM	PF03953	Tubulin_C	coord: 263..392 e-value: 2.7E-51 score: 173.0
IPR003008	Tubulin/FtsZ, GTPase domain	SMART	SM00864	Tubulin_4	coord: 49..246 e-value: 1.4E-74 score: 263.7
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..213 e-value: 5.7E-68 score: 229.0
IPR023123	Tubulin, C-terminal	GENE3D	1.10.287.600	Helix hairpin bin	coord: 384..436 e-value: 1.4E-31 score: 109.9
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	GENE3D	3.40.50.1440	Tubulin/FtsZ, GTPase domain	coord: 1..268 e-value: 4.1E-129 score: 431.7
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	SUPERFAMILY	52490	Tubulin nucleotide-binding domain-like	coord: 1..244
IPR037103	Tubulin/FtsZ-like, C-terminal domain	GENE3D	3.30.1330.20		coord: 269..383 e-value: 1.5E-59 score: 200.9
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4
IPR017975	Tubulin, conserved site	PROSITE	PS00227	TUBULIN	coord: 142..148
IPR008280	Tubulin/FtsZ, C-terminal	SUPERFAMILY	55307	Tubulin C-terminal domain-like	coord: 246..436

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G017590	CmaCh06G017590	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G017590.1:exon:753	CmaCh06G017590.1:exon:753	exon
CmaCh06G017590.1:exon:754	CmaCh06G017590.1:exon:754	exon
CmaCh06G017590.1:exon:755	CmaCh06G017590.1:exon:755	exon
CmaCh06G017590.1:exon:756	CmaCh06G017590.1:exon:756	exon
CmaCh06G017590.1:exon:757	CmaCh06G017590.1:exon:757	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G017590.1:five_prime_utr	CmaCh06G017590.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G017590.1:cds	CmaCh06G017590.1:cds	CDS
CmaCh06G017590.1:cds	CmaCh06G017590.1:cds_2	CDS
CmaCh06G017590.1:cds	CmaCh06G017590.1:cds_3	CDS
CmaCh06G017590.1:cds	CmaCh06G017590.1:cds_4	CDS
CmaCh06G017590.1:cds	CmaCh06G017590.1:cds_5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G017590.1:three_prime_utr	CmaCh06G017590.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G017590.1	CmaCh06G017590.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0000278	mitotic cell cycle
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton