CmaCh05G001640.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G001640.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionMannose-P-dolichol utilization defect 1 protein homolog
LocationCma_Chr05: 701691 .. 704213 (-)
Sequence length641
RNA-Seq ExpressionCmaCh05G001640.1
SyntenyCmaCh05G001640.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCCACGTCTTACTTTCTCAGCGTTGTAATCTGAAGAACGCGGGTGGAGATGGAGTTTTTTGGAATGGATTTCACCTGTGTTTTCGGAGCTCTAAACCACGGCAAGTTCCCGGAGAAAGATTGCTTGCTACCCCTCATCTCTAAGCTTCTCGGCTATTGCATTGTCGCCGCTTCAACCACCGTCAAACTTCCTCAGGCAAGCTATTCTGTCTTCCCTCTCTAGACTATAAACATATCTGTTTTGACTTTATCGACGGAAATGTGATGGAATCATAGCGTTTGTAATAAATGTTCACCTGGGTTGTGTTCTCGAGGTTCGGCTTGCCCTCTAATTCTGTGTAATGCAATTCAAGACCCCGTGAAATGTTTGTGAACACTTTTTGTGTTGTGTAAAGTGGCGGTTGATAATAATTTTTTTAATGTTTAAGCTTGATAATAAACTTTTTAGGCTCAATTTTGCTAATAATTTTTGTTAGGTTCAATTAGTTCAGTTATAAGTAAGCATCTGATACCCAAACTTTTTTGGGTGTAGCTAAGAATTGCAACCTGTTCCAAGTCTAATTAGGTCCTAAATAAATCTCTTGAACTTATATCAATCACCGAGAAGATCCCCACGCTTCCTTTAAATTCAAATATTTATTTATTTATTTATTTATTGTTTTCTTCCTGTTCAACGTTTCTGCCTGAATAATTTTTACCATTTCTCTTGCATGCATCCTACGATGGTTGCCGTTATCTACTATTATTCTCAGCCTATTGGTATGAAAACGTGGATCAGAGCGTTACTGTATCCTATTTGTTTTCACCTGTTCAGATTCTGCTTCTTTCTTGACGCATGCTTCTATAATGAGAACATTTCAACTGAGATCCTCCTGTGTTTTTATTTATATATTAATTTTTGCAAAAGAAGGGAGAAACTTGTAACTGCCTTAACACGCTCCCACTCAGATATTGTGCTCTAGCGCCAACAGTTCTAGCCGGTCAGATTAATCCTGCTCTCTTTGAAGCTCTTTACGCAAGTCTCGTACTGTTTTTTTAGGATTTATCGCTTAATCCATGTTTTAAGCTTTCTCAATTTCTTGTAAATTGTTCTTTAGATATTTTTACTGTCTGTCACTAATGTATTTGTTCATTCCTCGAAGAAGGTAAATAAATGAAGAAAAATCATGGACTTACCTTTACGTGTTGAAAATTTTCTCCTGTAATAGCTCTATACTAAAATCTTTGCCAATTTGGAAACTTCCTTTCAGCCATCTCAACATGCAGTTTTTCTCTTCTCGAGGATCCCTCAAATATGGAAGAACTTTTCTGTAAGTTTATTTGAAGGTTCTATTATACGATTTCAAATTTTCAATTAAATTACCCTTTGGGAAGGAAGAAAAAAAAAAAAAAGACAGGAAAAAATATTAAATGATATTGGACGATCTGTACCATTGTCATAGTTTCTCCAATTGCATTTCAAAAGATTAGGAAAGTGGTTCGAAACTGAACCTTGTAATCACGAAACCAGCTGTTGTCATGTTAACCAATGACCGTTCAAGTGAGAGTTTACCTTTCCTTTTGAGCATAGGTTTTTTGCCTTTTGGATTAACCCAATAGGCCTCGTACCAACAAAGCTATCATTCCTCACTTATGTACTCATGATCTCTCCCTTATCTAGCCAATATAGAATTTTAGTTGCATTCCCAACATTTATAAATAATCTTTTCTTTGGTTTGATGATATCATGTCTTAACCGTATTTTGTTTTGTTTTGATATCTTCCATGAAAGTACTCATTCAAAAAAAAAAGTAATCCTCTGTAATGAACAAAAGTTCTGGGAGCTTAGCCTTTTAACATCCATGATGAACTTTGGAGGTTCTATGGGTAAGACGATTCCCTGATGAAATTTAGTCGGTTGCATTAGTTTTCTCGTGAAGACATCAAGGTTTATTCCATTTTTCTTTTGCAGTGAGGGTTTTCACCAGCATACAAGAAAACGCACCAAGCAGTGGTATCCTCTTTTTAAAATTTATTTTTATTTTTTCCTTTCCGCACTTTTATTATTTGGGTAGTAGTTTCAGTGATAACATCTTATAAGAATTCAAGAATCAGTCTCATGCATGAAGTTTTGGTCTTTTCTAGGTTCAGCCTTTGCTCGAACACTTTCTCCGAGTTTACTAACAAATTCTCATTTCTTTGTAGTCATCGGTTATACTACTTGAAAAATATAAACTTGATGGAAAAATTCAAACACTCCCTTTTTCTGTTTGTAAAAATGCACTGCTGCATCAGTCCTCTCTAGGTCTTTGAAAACCTACTCCCACAGGTTTTATGAGTAACCTCTCGTTCTTTTTTGTTGTTAATATAATCCATTCAAGTTATTTTCCTAGATATTTATTCATTTTGATAAACCGTGGTCCTTAAAGCTTGTCAAAGTTCTCTTGGGATCGGCATTTTCCATTGTGACACACAGTACCATTTTGAGTCGGATAATTGTATACCAGAAGAGGGATGTAAAGAAAGAGAAGAAAACAGAGTAG

mRNA sequence

CATCCACGTCTTACTTTCTCAGCGTTGTAATCTGAAGAACGCGGGTGGAGATGGAGTTTTTTGGAATGGATTTCACCTGTGTTTTCGGAGCTCTAAACCACGGCAAGTTCCCGGAGAAAGATTGCTTGCTACCCCTCATCTCTAAGCTTCTCGGCTATTGCATTGTCGCCGCTTCAACCACCGTCAAACTTCCTCAGCCTATTGGTATGAAAACGTGGATCAGAGCGTTACTATATTGTGCTCTAGCGCCAACAGTTCTAGCCGGTCAGATTAATCCTGCTCTCTTTGAAGCTCTTTACGCAAGTCTCATATTTTTACTGTCTGTCACTAATGTATTTGTTCATTCCTCGAAGAAGTTTTTCTCTTCTCGAGGATCCCTCAAATATGGAAGAACTTTTCTTACTCATTCAAAAAAAAAAGTAATCCTCTGTAATGAACAAAAGTTCTGGGAGCTTAGCCTTTTAACATCCATGATGAACTTTGGAGGTTCTATGGTGAGGGTTTTCACCAGCATACAAGAAAACGCACCAAGCAGTGTTCTCTTGGGATCGGCATTTTCCATTGTGACACACAGTACCATTTTGAGTCGGATAATTGTATACCAGAAGAGGGATGTAAAGAAAGAGAAGAAAACAGAGTAG

Coding sequence (CDS)

ATGGAGTTTTTTGGAATGGATTTCACCTGTGTTTTCGGAGCTCTAAACCACGGCAAGTTCCCGGAGAAAGATTGCTTGCTACCCCTCATCTCTAAGCTTCTCGGCTATTGCATTGTCGCCGCTTCAACCACCGTCAAACTTCCTCAGCCTATTGGTATGAAAACGTGGATCAGAGCGTTACTATATTGTGCTCTAGCGCCAACAGTTCTAGCCGGTCAGATTAATCCTGCTCTCTTTGAAGCTCTTTACGCAAGTCTCATATTTTTACTGTCTGTCACTAATGTATTTGTTCATTCCTCGAAGAAGTTTTTCTCTTCTCGAGGATCCCTCAAATATGGAAGAACTTTTCTTACTCATTCAAAAAAAAAAGTAATCCTCTGTAATGAACAAAAGTTCTGGGAGCTTAGCCTTTTAACATCCATGATGAACTTTGGAGGTTCTATGGTGAGGGTTTTCACCAGCATACAAGAAAACGCACCAAGCAGTGTTCTCTTGGGATCGGCATTTTCCATTGTGACACACAGTACCATTTTGAGTCGGATAATTGTATACCAGAAGAGGGATGTAAAGAAAGAGAAGAAAACAGAGTAG

Protein sequence

MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLPQPIGMKTWIRALLYCALAPTVLAGQINPALFEALYASLIFLLSVTNVFVHSSKKFFSSRGSLKYGRTFLTHSKKKVILCNEQKFWELSLLTSMMNFGGSMVRVFTSIQENAPSSVLLGSAFSIVTHSTILSRIIVYQKRDVKKEKKTE
Homology
[Close]
BLAST of CmaCh05G001640.1 vs. ExPASy Swiss-Prot
Match: Q8VY63 (Mannose-P-dolichol utilization defect 1 protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At4g07390 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.7e-37
Identity = 105/261 (40.23%), Postives = 130/261 (49.81%), Query Frame = 0 

Query: 1   MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLP------------ 60
           M++ G+D +C  G+L +G FPEKDCLLPLISKLLGYC+VAAS TVKLP            
Sbjct: 1   MDYLGIDMSCAIGSLRNGDFPEKDCLLPLISKLLGYCLVAASITVKLPQIMKIVQHKSVR 60

Query: 61  ----------------------------------------------------QPIGMKTW 120
                                                               QP+ + TW
Sbjct: 61  GLSVVAFELEVVGYTISLAYCLHKGLPFSAFGEMAFLLIQALILVACIYYYSQPVPVTTW 120

Query: 121 IRALLYCALAPTVLAGQINPALFEALYAS--LIFLLS-VTNVFVHSSKKFFSSRGSLKYG 180
           IR LLYCA+APTVLAGQINP LFEALYAS   IFL + +  ++ +   K   S G     
Sbjct: 121 IRPLLYCAVAPTVLAGQINPTLFEALYASQHAIFLFARLPQIWKNFKNK---STG----- 180

Query: 181 RTFLTHSKKKVILCNEQKFWELSLLTSMMNFGGSMVRVFTSIQENAPSSVLLGSAFSIVT 195
                               ELS LT  MNF GS+VRVFTS+QE AP S+L G A  +VT
Sbjct: 181 --------------------ELSFLTFFMNFAGSIVRVFTSLQEKAPISILTGFALGVVT 233

[Close]
BLAST of CmaCh05G001640.1 vs. ExPASy Swiss-Prot
Match: Q9LTI3 (Mannose-P-dolichol utilization defect 1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g59470 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.6e-31
Identity = 92/253 (36.36%), Postives = 125/253 (49.41%), Query Frame = 0 

Query: 1   MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLP------------ 60
           M++ G+D +C  G+L +G+FP KDCLLPLISKLLGY +VAAS TVKLP            
Sbjct: 1   MDYLGIDLSCAIGSLRNGEFPAKDCLLPLISKLLGYFLVAASMTVKLPQIMKIVDNKSVK 60

Query: 61  ----------------------------------------------------QPIGMKTW 120
                                                               QP+ + TW
Sbjct: 61  GLSVVAFELEVIGYTISLAYCLNKDLPFSAFGELAFLLIQALILVACIYYFSQPLSVTTW 120

Query: 121 IRALLYCALAPTVLAGQINPALFEALYAS--LIFLLSVTNVFVHSSKKFFSSRGSLKYGR 180
           ++A+LY A+APTV AG+I+P LFEALYAS  LIFL    +  +    K F ++ +     
Sbjct: 121 VKAILYFAIAPTVFAGKIDPFLFEALYASKHLIFL----SARIPQIWKNFRNKST----- 180

Query: 181 TFLTHSKKKVILCNEQKFWELSLLTSMMNFGGSMVRVFTSIQENAPSSVLLGSAFSIVTH 188
                              +LS LT +MNFGG++ RVFTSIQE AP S+LLG   SI T+
Sbjct: 181 ------------------GQLSFLTCLMNFGGALARVFTSIQEKAPLSMLLGIVLSIFTN 226

[Close]
BLAST of CmaCh05G001640.1 vs. TAIR 10
Match: AT4G07390.1 (Mannose-P-dolichol utilization defect 1 protein )

HSP 1 Score: 155.6 bits (392), Expect = 4.1e-38
Identity = 105/261 (40.23%), Postives = 130/261 (49.81%), Query Frame = 0 

Query: 1   MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLP------------ 60
           M++ G+D +C  G+L +G FPEKDCLLPLISKLLGYC+VAAS TVKLP            
Sbjct: 1   MDYLGIDMSCAIGSLRNGDFPEKDCLLPLISKLLGYCLVAASITVKLPQIMKIVQHKSVR 60

Query: 61  ----------------------------------------------------QPIGMKTW 120
                                                               QP+ + TW
Sbjct: 61  GLSVVAFELEVVGYTISLAYCLHKGLPFSAFGEMAFLLIQALILVACIYYYSQPVPVTTW 120

Query: 121 IRALLYCALAPTVLAGQINPALFEALYAS--LIFLLS-VTNVFVHSSKKFFSSRGSLKYG 180
           IR LLYCA+APTVLAGQINP LFEALYAS   IFL + +  ++ +   K   S G     
Sbjct: 121 IRPLLYCAVAPTVLAGQINPTLFEALYASQHAIFLFARLPQIWKNFKNK---STG----- 180

Query: 181 RTFLTHSKKKVILCNEQKFWELSLLTSMMNFGGSMVRVFTSIQENAPSSVLLGSAFSIVT 195
                               ELS LT  MNF GS+VRVFTS+QE AP S+L G A  +VT
Sbjct: 181 --------------------ELSFLTFFMNFAGSIVRVFTSLQEKAPISILTGFALGVVT 233

[Close]
BLAST of CmaCh05G001640.1 vs. TAIR 10
Match: AT5G59470.1 (Mannose-P-dolichol utilization defect 1 protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-32
Identity = 92/253 (36.36%), Postives = 125/253 (49.41%), Query Frame = 0 

Query: 1   MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLP------------ 60
           M++ G+D +C  G+L +G+FP KDCLLPLISKLLGY +VAAS TVKLP            
Sbjct: 1   MDYLGIDLSCAIGSLRNGEFPAKDCLLPLISKLLGYFLVAASMTVKLPQIMKIVDNKSVK 60

Query: 61  ----------------------------------------------------QPIGMKTW 120
                                                               QP+ + TW
Sbjct: 61  GLSVVAFELEVIGYTISLAYCLNKDLPFSAFGELAFLLIQALILVACIYYFSQPLSVTTW 120

Query: 121 IRALLYCALAPTVLAGQINPALFEALYAS--LIFLLSVTNVFVHSSKKFFSSRGSLKYGR 180
           ++A+LY A+APTV AG+I+P LFEALYAS  LIFL    +  +    K F ++ +     
Sbjct: 121 VKAILYFAIAPTVFAGKIDPFLFEALYASKHLIFL----SARIPQIWKNFRNKST----- 180

Query: 181 TFLTHSKKKVILCNEQKFWELSLLTSMMNFGGSMVRVFTSIQENAPSSVLLGSAFSIVTH 188
                              +LS LT +MNFGG++ RVFTSIQE AP S+LLG   SI T+
Sbjct: 181 ------------------GQLSFLTCLMNFGGALARVFTSIQEKAPLSMLLGIVLSIFTN 226

[Close]
BLAST of CmaCh05G001640.1 vs. TAIR 10
Match: AT5G59470.2 (Mannose-P-dolichol utilization defect 1 protein )

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-14
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 1  MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLPQ 50
          M++ G+D +C  G+L +G+FP KDCLLPLISKLLGY +VAAS TVKLPQ
Sbjct: 1  MDYLGIDLSCAIGSLRNGEFPAKDCLLPLISKLLGYFLVAASMTVKLPQ 49

The following BLAST results are available for this feature:
BLAST of CmaCh05G001640.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VY635.7e-3740.23Mannose-P-dolichol utilization defect 1 protein homolog 2 OS=Arabidopsis thalian... [more]
Q9LTI33.6e-3136.36Mannose-P-dolichol utilization defect 1 protein homolog 1 OS=Arabidopsis thalian... [more]
BLAST of CmaCh05G001640.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G07390.14.1e-3840.23Mannose-P-dolichol utilization defect 1 protein [more]
AT5G59470.12.6e-3236.36Mannose-P-dolichol utilization defect 1 protein [more]
AT5G59470.24.1e-1467.35Mannose-P-dolichol utilization defect 1 protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016817Mannose-P-dolichol utilization defect 1 proteinPANTHERPTHR12226MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATEDcoord: 133..191
coord: 49..91
IPR016817Mannose-P-dolichol utilization defect 1 proteinPANTHERPTHR12226MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATEDcoord: 2..49
NoneNo IPR availablePANTHERPTHR12226:SF4MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN HOMOLOG 1coord: 2..49
NoneNo IPR availablePANTHERPTHR12226:SF4MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN HOMOLOG 1coord: 133..191
coord: 49..91

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh05G001640CmaCh05G001640gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh05G001640.1:exon:3311CmaCh05G001640.1:exon:3311exon
CmaCh05G001640.1:exon:3310CmaCh05G001640.1:exon:3310exon
CmaCh05G001640.1:exon:3309CmaCh05G001640.1:exon:3309exon
CmaCh05G001640.1:exon:3308CmaCh05G001640.1:exon:3308exon
CmaCh05G001640.1:exon:3307CmaCh05G001640.1:exon:3307exon
CmaCh05G001640.1:exon:3306CmaCh05G001640.1:exon:3306exon
CmaCh05G001640.1:exon:3305CmaCh05G001640.1:exon:3305exon
CmaCh05G001640.1:exon:3304CmaCh05G001640.1:exon:3304exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh05G001640.1:cdsCmaCh05G001640.1:cds_8CDS
CmaCh05G001640.1:cdsCmaCh05G001640.1:cds_7CDS
CmaCh05G001640.1:cdsCmaCh05G001640.1:cds_6CDS
CmaCh05G001640.1:cdsCmaCh05G001640.1:cds_5CDS
CmaCh05G001640.1:cdsCmaCh05G001640.1:cds_4CDS
CmaCh05G001640.1:cdsCmaCh05G001640.1:cds_3CDS
CmaCh05G001640.1:cdsCmaCh05G001640.1:cds_2CDS
CmaCh05G001640.1:cdsCmaCh05G001640.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh05G001640.1:five_prime_utrCmaCh05G001640.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh05G001640.1CmaCh05G001640.1-proteinpolypeptide