CmaCh05G001640 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G001640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Mannose-P-dolichol utilization defect 1 protein homolog
Location	Cma_Chr05: 701691 .. 704213 (-)
RNA-Seq Expression	CmaCh05G001640
Synteny	CmaCh05G001640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCCACGTCTTACTTTCTCAGCGTTGTAATCTGAAGAACGCGGGTGGAGATGGAGTTTTTTGGAATGGATTTCACCTGTGTTTTCGGAGCTCTAAACCACGGCAAGTTCCCGGAGAAAGATTGCTTGCTACCCCTCATCTCTAAGCTTCTCGGCTATTGCATTGTCGCCGCTTCAACCACCGTCAAACTTCCTCAGGCAAGCTATTCTGTCTTCCCTCTCTAGACTATAAACATATCTGTTTTGACTTTATCGACGGAAATGTGATGGAATCATAGCGTTTGTAATAAATGTTCACCTGGGTTGTGTTCTCGAGGTTCGGCTTGCCCTCTAATTCTGTGTAATGCAATTCAAGACCCCGTGAAATGTTTGTGAACACTTTTTGTGTTGTGTAAAGTGGCGGTTGATAATAATTTTTTTAATGTTTAAGCTTGATAATAAACTTTTTAGGCTCAATTTTGCTAATAATTTTTGTTAGGTTCAATTAGTTCAGTTATAAGTAAGCATCTGATACCCAAACTTTTTTGGGTGTAGCTAAGAATTGCAACCTGTTCCAAGTCTAATTAGGTCCTAAATAAATCTCTTGAACTTATATCAATCACCGAGAAGATCCCCACGCTTCCTTTAAATTCAAATATTTATTTATTTATTTATTTATTGTTTTCTTCCTGTTCAACGTTTCTGCCTGAATAATTTTTACCATTTCTCTTGCATGCATCCTACGATGGTTGCCGTTATCTACTATTATTCTCAGCCTATTGGTATGAAAACGTGGATCAGAGCGTTACTGTATCCTATTTGTTTTCACCTGTTCAGATTCTGCTTCTTTCTTGACGCATGCTTCTATAATGAGAACATTTCAACTGAGATCCTCCTGTGTTTTTATTTATATATTAATTTTTGCAAAAGAAGGGAGAAACTTGTAACTGCCTTAACACGCTCCCACTCAGATATTGTGCTCTAGCGCCAACAGTTCTAGCCGGTCAGATTAATCCTGCTCTCTTTGAAGCTCTTTACGCAAGTCTCGTACTGTTTTTTTAGGATTTATCGCTTAATCCATGTTTTAAGCTTTCTCAATTTCTTGTAAATTGTTCTTTAGATATTTTTACTGTCTGTCACTAATGTATTTGTTCATTCCTCGAAGAAGGTAAATAAATGAAGAAAAATCATGGACTTACCTTTACGTGTTGAAAATTTTCTCCTGTAATAGCTCTATACTAAAATCTTTGCCAATTTGGAAACTTCCTTTCAGCCATCTCAACATGCAGTTTTTCTCTTCTCGAGGATCCCTCAAATATGGAAGAACTTTTCTGTAAGTTTATTTGAAGGTTCTATTATACGATTTCAAATTTTCAATTAAATTACCCTTTGGGAAGGAAGAAAAAAAAAAAAAAGACAGGAAAAAATATTAAATGATATTGGACGATCTGTACCATTGTCATAGTTTCTCCAATTGCATTTCAAAAGATTAGGAAAGTGGTTCGAAACTGAACCTTGTAATCACGAAACCAGCTGTTGTCATGTTAACCAATGACCGTTCAAGTGAGAGTTTACCTTTCCTTTTGAGCATAGGTTTTTTGCCTTTTGGATTAACCCAATAGGCCTCGTACCAACAAAGCTATCATTCCTCACTTATGTACTCATGATCTCTCCCTTATCTAGCCAATATAGAATTTTAGTTGCATTCCCAACATTTATAAATAATCTTTTCTTTGGTTTGATGATATCATGTCTTAACCGTATTTTGTTTTGTTTTGATATCTTCCATGAAAGTACTCATTCAAAAAAAAAAGTAATCCTCTGTAATGAACAAAAGTTCTGGGAGCTTAGCCTTTTAACATCCATGATGAACTTTGGAGGTTCTATGGGTAAGACGATTCCCTGATGAAATTTAGTCGGTTGCATTAGTTTTCTCGTGAAGACATCAAGGTTTATTCCATTTTTCTTTTGCAGTGAGGGTTTTCACCAGCATACAAGAAAACGCACCAAGCAGTGGTATCCTCTTTTTAAAATTTATTTTTATTTTTTCCTTTCCGCACTTTTATTATTTGGGTAGTAGTTTCAGTGATAACATCTTATAAGAATTCAAGAATCAGTCTCATGCATGAAGTTTTGGTCTTTTCTAGGTTCAGCCTTTGCTCGAACACTTTCTCCGAGTTTACTAACAAATTCTCATTTCTTTGTAGTCATCGGTTATACTACTTGAAAAATATAAACTTGATGGAAAAATTCAAACACTCCCTTTTTCTGTTTGTAAAAATGCACTGCTGCATCAGTCCTCTCTAGGTCTTTGAAAACCTACTCCCACAGGTTTTATGAGTAACCTCTCGTTCTTTTTTGTTGTTAATATAATCCATTCAAGTTATTTTCCTAGATATTTATTCATTTTGATAAACCGTGGTCCTTAAAGCTTGTCAAAGTTCTCTTGGGATCGGCATTTTCCATTGTGACACACAGTACCATTTTGAGTCGGATAATTGTATACCAGAAGAGGGATGTAAAGAAAGAGAAGAAAACAGAGTAG

mRNA sequence

CATCCACGTCTTACTTTCTCAGCGTTGTAATCTGAAGAACGCGGGTGGAGATGGAGTTTTTTGGAATGGATTTCACCTGTGTTTTCGGAGCTCTAAACCACGGCAAGTTCCCGGAGAAAGATTGCTTGCTACCCCTCATCTCTAAGCTTCTCGGCTATTGCATTGTCGCCGCTTCAACCACCGTCAAACTTCCTCAGCCTATTGGTATGAAAACGTGGATCAGAGCGTTACTATATTGTGCTCTAGCGCCAACAGTTCTAGCCGGTCAGATTAATCCTGCTCTCTTTGAAGCTCTTTACGCAAGTCTCATATTTTTACTGTCTGTCACTAATGTATTTGTTCATTCCTCGAAGAAGTTTTTCTCTTCTCGAGGATCCCTCAAATATGGAAGAACTTTTCTTACTCATTCAAAAAAAAAAGTAATCCTCTGTAATGAACAAAAGTTCTGGGAGCTTAGCCTTTTAACATCCATGATGAACTTTGGAGGTTCTATGGTGAGGGTTTTCACCAGCATACAAGAAAACGCACCAAGCAGTGTTCTCTTGGGATCGGCATTTTCCATTGTGACACACAGTACCATTTTGAGTCGGATAATTGTATACCAGAAGAGGGATGTAAAGAAAGAGAAGAAAACAGAGTAG

Coding sequence (CDS)

ATGGAGTTTTTTGGAATGGATTTCACCTGTGTTTTCGGAGCTCTAAACCACGGCAAGTTCCCGGAGAAAGATTGCTTGCTACCCCTCATCTCTAAGCTTCTCGGCTATTGCATTGTCGCCGCTTCAACCACCGTCAAACTTCCTCAGCCTATTGGTATGAAAACGTGGATCAGAGCGTTACTATATTGTGCTCTAGCGCCAACAGTTCTAGCCGGTCAGATTAATCCTGCTCTCTTTGAAGCTCTTTACGCAAGTCTCATATTTTTACTGTCTGTCACTAATGTATTTGTTCATTCCTCGAAGAAGTTTTTCTCTTCTCGAGGATCCCTCAAATATGGAAGAACTTTTCTTACTCATTCAAAAAAAAAAGTAATCCTCTGTAATGAACAAAAGTTCTGGGAGCTTAGCCTTTTAACATCCATGATGAACTTTGGAGGTTCTATGGTGAGGGTTTTCACCAGCATACAAGAAAACGCACCAAGCAGTGTTCTCTTGGGATCGGCATTTTCCATTGTGACACACAGTACCATTTTGAGTCGGATAATTGTATACCAGAAGAGGGATGTAAAGAAAGAGAAGAAAACAGAGTAG

Protein sequence

MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLPQPIGMKTWIRALLYCALAPTVLAGQINPALFEALYASLIFLLSVTNVFVHSSKKFFSSRGSLKYGRTFLTHSKKKVILCNEQKFWELSLLTSMMNFGGSMVRVFTSIQENAPSSVLLGSAFSIVTHSTILSRIIVYQKRDVKKEKKTE

Homology

[Close]

BLAST of CmaCh05G001640 vs. ExPASy Swiss-Prot
Match: Q8VY63 (Mannose-P-dolichol utilization defect 1 protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At4g07390 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.7e-37
Identity = 105/261 (40.23%), Postives = 130/261 (49.81%), Query Frame = 0


Query: 1   MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLP------------ 60
           M++ G+D +C  G+L +G FPEKDCLLPLISKLLGYC+VAAS TVKLP            
Sbjct: 1   MDYLGIDMSCAIGSLRNGDFPEKDCLLPLISKLLGYCLVAASITVKLPQIMKIVQHKSVR 60

Query: 61  ----------------------------------------------------QPIGMKTW 120
                                                               QP+ + TW
Sbjct: 61  GLSVVAFELEVVGYTISLAYCLHKGLPFSAFGEMAFLLIQALILVACIYYYSQPVPVTTW 120

Query: 121 IRALLYCALAPTVLAGQINPALFEALYAS--LIFLLS-VTNVFVHSSKKFFSSRGSLKYG 180
           IR LLYCA+APTVLAGQINP LFEALYAS   IFL + +  ++ +   K   S G     
Sbjct: 121 IRPLLYCAVAPTVLAGQINPTLFEALYASQHAIFLFARLPQIWKNFKNK---STG----- 180

Query: 181 RTFLTHSKKKVILCNEQKFWELSLLTSMMNFGGSMVRVFTSIQENAPSSVLLGSAFSIVT 195
                               ELS LT  MNF GS+VRVFTS+QE AP S+L G A  +VT
Sbjct: 181 --------------------ELSFLTFFMNFAGSIVRVFTSLQEKAPISILTGFALGVVT 233

[Close]

BLAST of CmaCh05G001640 vs. ExPASy Swiss-Prot
Match: Q9LTI3 (Mannose-P-dolichol utilization defect 1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g59470 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.6e-31
Identity = 92/253 (36.36%), Postives = 125/253 (49.41%), Query Frame = 0


Query: 1   MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLP------------ 60
           M++ G+D +C  G+L +G+FP KDCLLPLISKLLGY +VAAS TVKLP            
Sbjct: 1   MDYLGIDLSCAIGSLRNGEFPAKDCLLPLISKLLGYFLVAASMTVKLPQIMKIVDNKSVK 60

Query: 61  ----------------------------------------------------QPIGMKTW 120
                                                               QP+ + TW
Sbjct: 61  GLSVVAFELEVIGYTISLAYCLNKDLPFSAFGELAFLLIQALILVACIYYFSQPLSVTTW 120

Query: 121 IRALLYCALAPTVLAGQINPALFEALYAS--LIFLLSVTNVFVHSSKKFFSSRGSLKYGR 180
           ++A+LY A+APTV AG+I+P LFEALYAS  LIFL    +  +    K F ++ +     
Sbjct: 121 VKAILYFAIAPTVFAGKIDPFLFEALYASKHLIFL----SARIPQIWKNFRNKST----- 180

Query: 181 TFLTHSKKKVILCNEQKFWELSLLTSMMNFGGSMVRVFTSIQENAPSSVLLGSAFSIVTH 188
                              +LS LT +MNFGG++ RVFTSIQE AP S+LLG   SI T+
Sbjct: 181 ------------------GQLSFLTCLMNFGGALARVFTSIQEKAPLSMLLGIVLSIFTN 226

[Close]

BLAST of CmaCh05G001640 vs. TAIR 10
Match: AT4G07390.1 (Mannose-P-dolichol utilization defect 1 protein )

HSP 1 Score: 155.6 bits (392), Expect = 4.1e-38
Identity = 105/261 (40.23%), Postives = 130/261 (49.81%), Query Frame = 0


Query: 1   MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLP------------ 60
           M++ G+D +C  G+L +G FPEKDCLLPLISKLLGYC+VAAS TVKLP            
Sbjct: 1   MDYLGIDMSCAIGSLRNGDFPEKDCLLPLISKLLGYCLVAASITVKLPQIMKIVQHKSVR 60

Query: 61  ----------------------------------------------------QPIGMKTW 120
                                                               QP+ + TW
Sbjct: 61  GLSVVAFELEVVGYTISLAYCLHKGLPFSAFGEMAFLLIQALILVACIYYYSQPVPVTTW 120

Query: 121 IRALLYCALAPTVLAGQINPALFEALYAS--LIFLLS-VTNVFVHSSKKFFSSRGSLKYG 180
           IR LLYCA+APTVLAGQINP LFEALYAS   IFL + +  ++ +   K   S G     
Sbjct: 121 IRPLLYCAVAPTVLAGQINPTLFEALYASQHAIFLFARLPQIWKNFKNK---STG----- 180

Query: 181 RTFLTHSKKKVILCNEQKFWELSLLTSMMNFGGSMVRVFTSIQENAPSSVLLGSAFSIVT 195
                               ELS LT  MNF GS+VRVFTS+QE AP S+L G A  +VT
Sbjct: 181 --------------------ELSFLTFFMNFAGSIVRVFTSLQEKAPISILTGFALGVVT 233

[Close]

BLAST of CmaCh05G001640 vs. TAIR 10
Match: AT5G59470.1 (Mannose-P-dolichol utilization defect 1 protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-32
Identity = 92/253 (36.36%), Postives = 125/253 (49.41%), Query Frame = 0


Query: 1   MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLP------------ 60
           M++ G+D +C  G+L +G+FP KDCLLPLISKLLGY +VAAS TVKLP            
Sbjct: 1   MDYLGIDLSCAIGSLRNGEFPAKDCLLPLISKLLGYFLVAASMTVKLPQIMKIVDNKSVK 60

Query: 61  ----------------------------------------------------QPIGMKTW 120
                                                               QP+ + TW
Sbjct: 61  GLSVVAFELEVIGYTISLAYCLNKDLPFSAFGELAFLLIQALILVACIYYFSQPLSVTTW 120

Query: 121 IRALLYCALAPTVLAGQINPALFEALYAS--LIFLLSVTNVFVHSSKKFFSSRGSLKYGR 180
           ++A+LY A+APTV AG+I+P LFEALYAS  LIFL    +  +    K F ++ +     
Sbjct: 121 VKAILYFAIAPTVFAGKIDPFLFEALYASKHLIFL----SARIPQIWKNFRNKST----- 180

Query: 181 TFLTHSKKKVILCNEQKFWELSLLTSMMNFGGSMVRVFTSIQENAPSSVLLGSAFSIVTH 188
                              +LS LT +MNFGG++ RVFTSIQE AP S+LLG   SI T+
Sbjct: 181 ------------------GQLSFLTCLMNFGGALARVFTSIQEKAPLSMLLGIVLSIFTN 226

[Close]

BLAST of CmaCh05G001640 vs. TAIR 10
Match: AT5G59470.2 (Mannose-P-dolichol utilization defect 1 protein )

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-14
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 1  MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLPQ 50
          M++ G+D +C  G+L +G+FP KDCLLPLISKLLGY +VAAS TVKLPQ
Sbjct: 1  MDYLGIDLSCAIGSLRNGEFPAKDCLLPLISKLLGYFLVAASMTVKLPQ 49

The following BLAST results are available for this feature:

BLAST of CmaCh05G001640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY63	5.7e-37	40.23	Mannose-P-dolichol utilization defect 1 protein homolog 2 OS=Arabidopsis thalian...	[more]
Q9LTI3	3.6e-31	36.36	Mannose-P-dolichol utilization defect 1 protein homolog 1 OS=Arabidopsis thalian...	[more]

BLAST of CmaCh05G001640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G07390.1	4.1e-38	40.23	Mannose-P-dolichol utilization defect 1 protein	[more]
AT5G59470.1	2.6e-32	36.36	Mannose-P-dolichol utilization defect 1 protein	[more]
AT5G59470.2	4.1e-14	67.35	Mannose-P-dolichol utilization defect 1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016817	Mannose-P-dolichol utilization defect 1 protein	PANTHER	PTHR12226	MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED	coord: 133..191 coord: 49..91
IPR016817	Mannose-P-dolichol utilization defect 1 protein	PANTHER	PTHR12226	MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED	coord: 2..49
None	No IPR available	PANTHER	PTHR12226:SF4	MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN HOMOLOG 1	coord: 2..49
None	No IPR available	PANTHER	PTHR12226:SF4	MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN HOMOLOG 1	coord: 133..191 coord: 49..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G001640.1	CmaCh05G001640.1	mRNA