CmaCh04G016450.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G016450.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor PRE6-like
Location	Cma_Chr04: 8301679 .. 8302407 (-)
Sequence length	644
RNA-Seq Expression	CmaCh04G016450.1
Synteny	CmaCh04G016450.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTAGCTCGCCTTTCTCCAACAAACAACATTACATTCTTCATCTGCCTTTCTCTCACCTCTGCCCTCTGGCCCTCTCTGGATCTCCCCACTTTTCAAACACACACACAAAACCCCCCAATGTCTACCAGAACCTCCCGTTCTAGACGCTCCCCTCTTCCTTCTACCACCATCTCTGACCACCAGATTGCTGATTTGATCTCCAAATTACACCAACTCATCCCTCAGATTCGTAATCGACGTTCCTCCTCCACGGTATTCTCTCCTTTCTCTTTATCATACGTAGGACAATAACTGCTTGCGGTGGACTTAGACGGTGTGAATGTGTGTGGGGATGTAGGTATCAGCTTCCAAGGTTCTACAAGAGACTTGCAACTTCATAAGAAGCTTAGAGAGAGAGGTGGATGACTTGAGCGAGCGATTATCAGAGCTATTGGCGTCCACAGACCCTGAAAGTGCTCAGGCTGCCATACTTAGAAGCTTACTTATGTAATGAGTATCACAACTCCATCCCAGGTTTCTTCTTCTATAGACCATTTGGTGTTCAGCAGCGAAGCCTCAGATGTGGATTTCCCTACACGCACCTATTTCAAACCTTCCATCTTTACCCACCATGCAGTTAATTAATCAATTAATATAAATATGTGTAAAGTCGTATAATAAAATGACCTTCTCTAGAGTTCCACTTTTATTATCATATATTTAAGTTAAGTTAAGTTTATATTGTTC

mRNA sequence

TTTTTAGCTCGCCTTTCTCCAACAAACAACATTACATTCTTCATCTGCCTTTCTCTCACCTCTGCCCTCTGGCCCTCTCTGGATCTCCCCACTTTTCAAACACACACACAAAACCCCCCAATGTCTACCAGAACCTCCCGTTCTAGACGCTCCCCTCTTCCTTCTACCACCATCTCTGACCACCAGATTGCTGATTTGATCTCCAAATTACACCAACTCATCCCTCAGATTCGTAATCGACGTTCCTCCTCCACGGTATCAGCTTCCAAGGTTCTACAAGAGACTTGCAACTTCATAAGAAGCTTAGAGAGAGAGGTGGATGACTTGAGCGAGCGATTATCAGAGCTATTGGCGTCCACAGACCCTGAAAGTGCTCAGGCTGCCATACTTAGAAGCTTACTTATGTAATGAGTATCACAACTCCATCCCAGGTTTCTTCTTCTATAGACCATTTGGTGTTCAGCAGCGAAGCCTCAGATGTGGATTTCCCTACACGCACCTATTTCAAACCTTCCATCTTTACCCACCATGCAGTTAATTAATCAATTAATATAAATATGTGTAAAGTCGTATAATAAAATGACCTTCTCTAGAGTTCCACTTTTATTATCATATATTTAAGTTAAGTTAAGTTTATATTGTTC

Coding sequence (CDS)

ATGTCTACCAGAACCTCCCGTTCTAGACGCTCCCCTCTTCCTTCTACCACCATCTCTGACCACCAGATTGCTGATTTGATCTCCAAATTACACCAACTCATCCCTCAGATTCGTAATCGACGTTCCTCCTCCACGGTATCAGCTTCCAAGGTTCTACAAGAGACTTGCAACTTCATAAGAAGCTTAGAGAGAGAGGTGGATGACTTGAGCGAGCGATTATCAGAGCTATTGGCGTCCACAGACCCTGAAAGTGCTCAGGCTGCCATACTTAGAAGCTTACTTATGTAA

Protein sequence

MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPESAQAAILRSLLM

Homology

[Close]

BLAST of CmaCh04G016450.1 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-23
Identity = 66/93 (70.97%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 2  STRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIRS 61
          S R+SRSR+S   S+ ISD QI+DL+SKL  LIP++R RRS   VSASKVLQETCN+IR+
Sbjct: 3  SRRSSRSRQS--GSSRISDDQISDLVSKLQHLIPELRRRRSDK-VSASKVLQETCNYIRN 62

Query: 62 LEREVDDLSERLSELLASTDPESAQAAILRSLL 95
          L REVDDLS+RLSELLASTD  SA+AAI+RSLL
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of CmaCh04G016450.1 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.3e-22
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 5  TSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIRSLER 64
          +SR  R    S+ ISD QI DLISKL Q IP+IR  R S+TVSASKVLQETCN+IR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSERLSELLASTDPESAQAAILRSLL 95
          E DDLS+RL++LL S DP S QAA++RSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of CmaCh04G016450.1 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-21
Identity = 62/95 (65.26%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60
          MS+R SRSR+S   S+ I+D QI+DL+SKL  L+P+ R  RS+  V +S+VLQETCN+IR
Sbjct: 1  MSSRRSRSRQS--GSSRITDEQISDLVSKLQDLLPEAR-LRSNDRVPSSRVLQETCNYIR 60

Query: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          SL +EVDDLSERLSELLA++D  SAQAAI+RSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of CmaCh04G016450.1 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-21
Identity = 62/95 (65.26%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60
          MS+R SRSR+S   S+ I+D QI+DL+SKL  L+P+ R  RS+  V +S+VLQETCN+IR
Sbjct: 1  MSSRRSRSRQS--GSSRITDEQISDLVSKLQDLLPEAR-LRSNDRVPSSRVLQETCNYIR 60

Query: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          SL +EVDDLSERLSELLA++D  SAQAAI+RSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of CmaCh04G016450.1 vs. ExPASy Swiss-Prot
Match: F4JCN9 (Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.1e-21
Identity = 58/95 (61.05%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60
          MS+R SRSR++   ++ I+D QI DL+ +LH+L+P++ N R S  VSAS+VLQETC++IR
Sbjct: 1  MSSRKSRSRQT--GASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIR 60

Query: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          +L +EVDDLSERLS+LL STD  SAQAA++RSLLM
Sbjct: 61 NLSKEVDDLSERLSQLLESTD--SAQAALIRSLLM 91

[Close]

BLAST of CmaCh04G016450.1 vs. ExPASy TrEMBL
Match: A0A6J1JAV8 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111485123 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.1e-40
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60
          MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR
Sbjct: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60

Query: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          SLEREVDDLSERLSELLASTDPESAQAAILRSLLM
Sbjct: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLLM 95

[Close]

BLAST of CmaCh04G016450.1 vs. ExPASy TrEMBL
Match: A0A6J1GYM6 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111458692 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.4e-37
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRR-SSSTVSASKVLQETCNFI 60
          MSTRT RSRR PLPSTTISDHQIADLISKLHQLIPQIRNRR SSSTVSASKVLQETCNFI
Sbjct: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60

Query: 61 RSLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          RSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Sbjct: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 96

[Close]

BLAST of CmaCh04G016450.1 vs. ExPASy TrEMBL
Match: A0A6J1DAM4 (transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-32
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60
          MS+R+SRSRRSP+PS  ISD QIADLISKL QLIP+IRN RSSS VSASKVLQETCN+IR
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          SL+REVDDLSERLSELLASTDPESAQAAI+RSLLM
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CmaCh04G016450.1 vs. ExPASy TrEMBL
Match: A0A6J1HXN1 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60
          MS+R+SRSRRS +PS+ ISD QIADLISKL QLIP+IRN RSSS VSASKVLQETCN+IR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          SL+REV DLS+RLSELL STDPESAQAAI+RSLLM
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of CmaCh04G016450.1 vs. ExPASy TrEMBL
Match: A0A6J1G268 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.6e-30
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60
          MS+R+SRSRRS +PS+ ISD QIADLISKL QLIP+IRN RSSS VSASKVLQETCN+IR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          SL+REV DLS+RLSELL STDPESAQAAI+RSLLM
Sbjct: 61 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of CmaCh04G016450.1 vs. NCBI nr
Match: XP_022987627.1 (transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60
          MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR
Sbjct: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60

Query: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          SLEREVDDLSERLSELLASTDPESAQAAILRSLLM
Sbjct: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLLM 95

[Close]

BLAST of CmaCh04G016450.1 vs. NCBI nr
Match: XP_023514693.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRR-SSSTVSASKVLQETCNFI 60
          MSTRT RSRRSPLPSTTISDHQIADLISKLH+LIPQIRNRR SSSTVSASK+LQETCNFI
Sbjct: 1  MSTRTPRSRRSPLPSTTISDHQIADLISKLHRLIPQIRNRRSSSSTVSASKILQETCNFI 60

Query: 61 RSLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          RSLEREVDDLSERLSELLASTDPESAQAAILRSLLM
Sbjct: 61 RSLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96

[Close]

BLAST of CmaCh04G016450.1 vs. NCBI nr
Match: KAG7032204.1 (Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.7 bits (413), Expect = 7.8e-37
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRR----SSSTVSASKVLQETC 60
          MSTRT RSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRR    SSSTVSASKVLQETC
Sbjct: 1  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETC 60

Query: 61 NFIRSLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          NFIRSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Sbjct: 61 NFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 99

[Close]

BLAST of CmaCh04G016450.1 vs. NCBI nr
Match: XP_022957252.1 (transcription factor PRE6-like [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRR-SSSTVSASKVLQETCNFI 60
          MSTRT RSRR PLPSTTISDHQIADLISKLHQLIPQIRNRR SSSTVSASKVLQETCNFI
Sbjct: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60

Query: 61 RSLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          RSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Sbjct: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 96

[Close]

BLAST of CmaCh04G016450.1 vs. NCBI nr
Match: KAG6601421.1 (Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNR-----RSSSTVSASKVLQET 60
           MSTRT RSRRSPLPSTTISDHQIADLISKLHQLIPQIRNR      SSSTVSASKVLQET
Sbjct: 1   MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRPSSSSSSSSTVSASKVLQET 60

Query: 61  CNFIRSLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
           CNFIRSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Sbjct: 61  CNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 100

[Close]

BLAST of CmaCh04G016450.1 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 7.3e-25
Identity = 66/93 (70.97%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 2  STRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIRS 61
          S R+SRSR+S   S+ ISD QI+DL+SKL  LIP++R RRS   VSASKVLQETCN+IR+
Sbjct: 3  SRRSSRSRQS--GSSRISDDQISDLVSKLQHLIPELRRRRSDK-VSASKVLQETCNYIRN 62

Query: 62 LEREVDDLSERLSELLASTDPESAQAAILRSLL 95
          L REVDDLS+RLSELLASTD  SA+AAI+RSLL
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of CmaCh04G016450.1 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 105.1 bits (261), Expect = 3.1e-23
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 5  TSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIRSLER 64
          +SR  R    S+ ISD QI DLISKL Q IP+IR  R S+TVSASKVLQETCN+IR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSERLSELLASTDPESAQAAILRSLL 95
          E DDLS+RL++LL S DP S QAA++RSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of CmaCh04G016450.1 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 100.9 bits (250), Expect = 5.8e-22
Identity = 58/95 (61.05%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60
          MS+R SRSR++   ++ I+D QI DL+ +LH+L+P++ N R S  VSAS+VLQETC++IR
Sbjct: 1  MSSRKSRSRQT--GASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIR 60

Query: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          +L +EVDDLSERLS+LL STD  SAQAA++RSLLM
Sbjct: 61 NLSKEVDDLSERLSQLLESTD--SAQAALIRSLLM 91

[Close]

BLAST of CmaCh04G016450.1 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 100.1 bits (248), Expect = 9.9e-22
Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60
          MS R SR   S   +  ISD+Q+ DL+SKL Q++P+I  RR S   SASKVLQETCN+IR
Sbjct: 1  MSNRRSRQSSS---APRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIR 60

Query: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96
          +L REVD+LSERLS+LL S D +S +AA++RSLLM
Sbjct: 61 NLNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CmaCh04G016450.1 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-21
Identity = 59/94 (62.77%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSTVSASKVLQETCNFIR 60
          MS R SRSR+S   ++ IS+ QI DLI KL QL+P++R+ R S  VSA++VLQ+TCN+IR
Sbjct: 1  MSGRRSRSRQSS-GTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLEREVDDLSERLSELLASTDPESAQAAILRSLL 95
          +L REVDDLSERLSELLA++D  +AQAA++RSLL
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

The following BLAST results are available for this feature:

BLAST of CmaCh04G016450.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	1.0e-23	70.97	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9LXG5	4.3e-22	63.33	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
B8APB5	1.3e-21	65.26	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	1.3e-21	65.26	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
F4JCN9	8.1e-21	61.05	Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1	[more]

BLAST of CmaCh04G016450.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAV8	8.1e-40	100.00	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111485123 PE=4 ...	[more]
A0A6J1GYM6	6.4e-37	95.83	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111458692 PE=...	[more]
A0A6J1DAM4	1.3e-32	86.32	transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE...	[more]
A0A6J1HXN1	2.0e-30	82.11	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 ...	[more]
A0A6J1G268	2.6e-30	82.11	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=...	[more]

BLAST of CmaCh04G016450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022987627.1	1.7e-39	100.00	transcription factor PRE6-like [Cucurbita maxima]	[more]
XP_023514693.1	6.0e-37	95.83	transcription factor PRE6-like [Cucurbita pepo subsp. pepo]	[more]
KAG7032204.1	7.8e-37	93.94	Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022957252.1	1.3e-36	95.83	transcription factor PRE6-like [Cucurbita moschata]	[more]
KAG6601421.1	5.1e-36	92.00	Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmaCh04G016450.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	7.3e-25	70.97	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G15160.1	3.1e-23	63.33	BANQUO 2	[more]
AT3G47710.1	5.8e-22	61.05	BANQUO 3	[more]
AT5G39860.1	9.9e-22	60.00	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT1G74500.1	2.9e-21	62.77	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..79
None	No IPR available	PANTHER	PTHR46446:SF11	TRANSCRIPTION FACTOR PRE6	coord: 1..95
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 20..91 e-value: 1.9E-7 score: 33.2
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 21..83
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh04G016450	CmaCh04G016450	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G016450.1:exon:2034	CmaCh04G016450.1:exon:2034	exon
CmaCh04G016450.1:exon:2033	CmaCh04G016450.1:exon:2033	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G016450.1:three_prime_utr	CmaCh04G016450.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G016450.1:cds	CmaCh04G016450.1:cds_2	CDS
CmaCh04G016450.1:cds	CmaCh04G016450.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G016450.1:five_prime_utr	CmaCh04G016450.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh04G016450.1	CmaCh04G016450.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity