CmaCh04G012240.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G012240.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 6243229 .. 6244554 (+)
Sequence length375
RNA-Seq ExpressionCmaCh04G012240.1
SyntenyCmaCh04G012240.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATGTGATTCAGTCAGTGTCTTGTATGGTAGAGATACAGGAAATGCGGAACTGTTCAAAGCAAACATATCATCACAGTATTGCTAGTCTTGCCTGCTGTTTCTATTGATAGGTGAGAAGATTTCATTATGTTCCAACTCACCTATCCGATGGGTTCCTGGAAATTTTGCTGATATCTTGAACCAGAACCGAGCTCTGTATGAAAAAAATCTTGTAATTGTTGATGATCAGTTGGTAGCAAAGAACAGCTTGGAAATCTTATCAGCCCAAGATGAGCTCAAGAAAATGGTATTATGTCCAATTCGTCTATAGTAGTCCTCATTTCTTGTACGCTTATAGAAAATCTAGATTCATAACTGAGGAATGCTTGATAATCCATTCCATTTGGTAGATAGATGAGGGGAGGTGTTCCTTTTTTTATCTTCTTGTTTCTTTTTAATTGTAGGTTCATAGGAGATTTGAATCCTTGGCGGAAAAGTCATGACCAATATACAATTTCATCATTGATTAAGGGTGAGTGAGTCTCATATATCTTGGTATTTTCGACCATCAAATACTCGAGTACGGTATAAGAATTTGAACTTCCGACTTGATGGAAGAAGGAAGGGAAAAATTATATGTCGATTACTAAAGGCTCACTTTTATCAAATATTTTTTTCATTTTACTTTTGTAGTAAAATTTAATTTAATAATCTTTAGAACCTTAGGAAGTGTTGCGGTCTCTTTTCAGATTATACTGCTTTCAAACATGATATTTAAGAGAGAAAAATGTGTTTCCTCCTGGGCTCTATAAAACTGTTATTTTTTATTATATAAAAATGAATATTCAAATGGATATAGAAATTACTGTTCGCTAAATAAATAAATATATAGAAATTTGCGTGCTTTTATTTATTTATTTATATTTTGAGAACATATTATATTGTTCTAATTTGATAATTATACCTGGTTCGGCCATTTGCCCACCGTGTGTGTAAGGCAAGAGTCAAACAAGTCATCTTTTAATTAATTGGATAAATTTGATACACTTTCATAACATTTTTTGTTTACTATTAGAAACATAATTGCCTATTAAAAAACTGAATAACTTTCAAAAAACAGAGGACAAAATCAATTTTCGAAGGAGAAAAAATTAATAGCAAAATTCAAATCACATACGATTCTCATACATACATTAAAATACAATTTACTTTTATTTCTCTATCAATCTTTGCTAGTGCTAGTAATACCAATAAATAATGAACAGTTATGATGATTCCTGAACAGAATGCTATTCCTCTCTCCCATTCAAGGCATATATTGATAGTTTCACTCAAATCTTAA

mRNA sequence

ATGCGATGTGATTCAGTCAGTGTCTTGTATGGTGAGAAGATTTCATTATGTTCCAACTCACCTATCCGATGGGTTCCTGGAAATTTTGCTGATATCTTGAACCAGAACCGAGCTCTGTATGAAAAAAATCTTGTAATTGTTGATGATCAGTTGGTAGCAAAGAACAGCTTGGAAATCTTATCAGCCCAAGATGAGCTCAAGAAAATGGTATTATGTCCAATTCGTCTATAGTTCATAGGAGATTTGAATCCTTGGCGGAAAAGTCATGACCAATATACAATTTCATCATTGATTAAGGTTATGATGATTCCTGAACAGAATGCTATTCCTCTCTCCCATTCAAGGCATATATTGATAGTTTCACTCAAATCTTAA

Coding sequence (CDS)

ATGCGATGTGATTCAGTCAGTGTCTTGTATGGTGAGAAGATTTCATTATGTTCCAACTCACCTATCCGATGGGTTCCTGGAAATTTTGCTGATATCTTGAACCAGAACCGAGCTCTGTATGAAAAAAATCTTGTAATTGTTGATGATCAGTTGGTAGCAAAGAACAGCTTGGAAATCTTATCAGCCCAAGATGAGCTCAAGAAAATGGTATTATGTCCAATTCGTCTATAG

Protein sequence

MRCDSVSVLYGEKISLCSNSPIRWVPGNFADILNQNRALYEKNLVIVDDQLVAKNSLEILSAQDELKKMVLCPIRL
Homology
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BLAST of CmaCh04G012240.1 vs. NCBI nr
Match: KAG7031832.1 (hypothetical protein SDJN02_05873, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 0 

Query: 1  MRCDSVSVLYGEKISLCSNSPIRWVPGNFADILNQNR-ALYEKNLVIVDDQLVAKNSLEI 60
          MRCDS+SVLYG       N+ +       A+I +Q    + EKNLV+VDDQLVAK++LEI
Sbjct: 1  MRCDSISVLYGRD---TGNAEL-----FKANISSQTELCMKEKNLVVVDDQLVAKHNLEI 60

Query: 61 LSAQDELKKMV 71
          LS QD+ KK V
Sbjct: 61 LSVQDDPKKRV 63

The following BLAST results are available for this feature:
BLAST of CmaCh04G012240.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012240.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012240.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031832.12.8e-0552.11hypothetical protein SDJN02_05873, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh04G012240.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh04G012240CmaCh04G012240gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G012240.1:exon:1388CmaCh04G012240.1:exon:1388exon
CmaCh04G012240.1:exon:1389CmaCh04G012240.1:exon:1389exon
CmaCh04G012240.1:exon:1390CmaCh04G012240.1:exon:1390exon
CmaCh04G012240.1:exon:1391CmaCh04G012240.1:exon:1391exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G012240.1:cdsCmaCh04G012240.1:cdsCDS
CmaCh04G012240.1:cdsCmaCh04G012240.1:cds_2CDS
CmaCh04G012240.1:cdsCmaCh04G012240.1:cds_3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G012240.1:three_prime_utrCmaCh04G012240.1:three_prime_utrthree_prime_UTR
CmaCh04G012240.1:three_prime_utrCmaCh04G012240.1:three_prime_utr_2three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh04G012240.1CmaCh04G012240.1-proteinpolypeptide