CmaCh04G012240 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G012240
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 6243229 .. 6244554 (+)
RNA-Seq ExpressionCmaCh04G012240
SyntenyCmaCh04G012240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATGTGATTCAGTCAGTGTCTTGTATGGTAGAGATACAGGAAATGCGGAACTGTTCAAAGCAAACATATCATCACAGTATTGCTAGTCTTGCCTGCTGTTTCTATTGATAGGTGAGAAGATTTCATTATGTTCCAACTCACCTATCCGATGGGTTCCTGGAAATTTTGCTGATATCTTGAACCAGAACCGAGCTCTGTATGAAAAAAATCTTGTAATTGTTGATGATCAGTTGGTAGCAAAGAACAGCTTGGAAATCTTATCAGCCCAAGATGAGCTCAAGAAAATGGTATTATGTCCAATTCGTCTATAGTAGTCCTCATTTCTTGTACGCTTATAGAAAATCTAGATTCATAACTGAGGAATGCTTGATAATCCATTCCATTTGGTAGATAGATGAGGGGAGGTGTTCCTTTTTTTATCTTCTTGTTTCTTTTTAATTGTAGGTTCATAGGAGATTTGAATCCTTGGCGGAAAAGTCATGACCAATATACAATTTCATCATTGATTAAGGGTGAGTGAGTCTCATATATCTTGGTATTTTCGACCATCAAATACTCGAGTACGGTATAAGAATTTGAACTTCCGACTTGATGGAAGAAGGAAGGGAAAAATTATATGTCGATTACTAAAGGCTCACTTTTATCAAATATTTTTTTCATTTTACTTTTGTAGTAAAATTTAATTTAATAATCTTTAGAACCTTAGGAAGTGTTGCGGTCTCTTTTCAGATTATACTGCTTTCAAACATGATATTTAAGAGAGAAAAATGTGTTTCCTCCTGGGCTCTATAAAACTGTTATTTTTTATTATATAAAAATGAATATTCAAATGGATATAGAAATTACTGTTCGCTAAATAAATAAATATATAGAAATTTGCGTGCTTTTATTTATTTATTTATATTTTGAGAACATATTATATTGTTCTAATTTGATAATTATACCTGGTTCGGCCATTTGCCCACCGTGTGTGTAAGGCAAGAGTCAAACAAGTCATCTTTTAATTAATTGGATAAATTTGATACACTTTCATAACATTTTTTGTTTACTATTAGAAACATAATTGCCTATTAAAAAACTGAATAACTTTCAAAAAACAGAGGACAAAATCAATTTTCGAAGGAGAAAAAATTAATAGCAAAATTCAAATCACATACGATTCTCATACATACATTAAAATACAATTTACTTTTATTTCTCTATCAATCTTTGCTAGTGCTAGTAATACCAATAAATAATGAACAGTTATGATGATTCCTGAACAGAATGCTATTCCTCTCTCCCATTCAAGGCATATATTGATAGTTTCACTCAAATCTTAA

mRNA sequence

ATGCGATGTGATTCAGTCAGTGTCTTGTATGGTGAGAAGATTTCATTATGTTCCAACTCACCTATCCGATGGGTTCCTGGAAATTTTGCTGATATCTTGAACCAGAACCGAGCTCTGTATGAAAAAAATCTTGTAATTGTTGATGATCAGTTGGTAGCAAAGAACAGCTTGGAAATCTTATCAGCCCAAGATGAGCTCAAGAAAATGGTATTATGTCCAATTCGTCTATAGTTCATAGGAGATTTGAATCCTTGGCGGAAAAGTCATGACCAATATACAATTTCATCATTGATTAAGGTTATGATGATTCCTGAACAGAATGCTATTCCTCTCTCCCATTCAAGGCATATATTGATAGTTTCACTCAAATCTTAA

Coding sequence (CDS)

ATGCGATGTGATTCAGTCAGTGTCTTGTATGGTGAGAAGATTTCATTATGTTCCAACTCACCTATCCGATGGGTTCCTGGAAATTTTGCTGATATCTTGAACCAGAACCGAGCTCTGTATGAAAAAAATCTTGTAATTGTTGATGATCAGTTGGTAGCAAAGAACAGCTTGGAAATCTTATCAGCCCAAGATGAGCTCAAGAAAATGGTATTATGTCCAATTCGTCTATAG

Protein sequence

MRCDSVSVLYGEKISLCSNSPIRWVPGNFADILNQNRALYEKNLVIVDDQLVAKNSLEILSAQDELKKMVLCPIRL
Homology
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BLAST of CmaCh04G012240 vs. NCBI nr
Match: KAG7031832.1 (hypothetical protein SDJN02_05873, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 0 

Query: 1  MRCDSVSVLYGEKISLCSNSPIRWVPGNFADILNQNR-ALYEKNLVIVDDQLVAKNSLEI 60
          MRCDS+SVLYG       N+ +       A+I +Q    + EKNLV+VDDQLVAK++LEI
Sbjct: 1  MRCDSISVLYGRD---TGNAEL-----FKANISSQTELCMKEKNLVVVDDQLVAKHNLEI 60

Query: 61 LSAQDELKKMV 71
          LS QD+ KK V
Sbjct: 61 LSVQDDPKKRV 63

The following BLAST results are available for this feature:
BLAST of CmaCh04G012240 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012240 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012240 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031832.12.8e-0552.11hypothetical protein SDJN02_05873, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh04G012240 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G012240.1CmaCh04G012240.1mRNA