CmaCh04G002610.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G002610.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionzinc finger CCCH domain-containing protein 11-like
LocationCma_Chr04: 1281395 .. 1284103 (+)
Sequence length694
RNA-Seq ExpressionCmaCh04G002610.1
SyntenyCmaCh04G002610.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATTTGCTTATTCCAGCGTGCAAAAGTTAAAACCACTACTCCCATTACACCGGAGCTTTTCTTTCAATGGAAGAAGAAAAAGATGAATGAAAGAGATGCTGGTTTGGCTGCACAACAAGCAGAGAGAGCTAAGAATGATCGCATGAGGTTTCTACATTACTCATATAGTTAATTTTACTTTTAAAGGTAATTAATAGTCATATAAGTTCCATTTTGTTCTTCAGTGGTCGGGAGTTGTTTCTTGCAAATGCAAGCTTGTTTGTGGATGACGCCGAGGCGTATGAAAAATATCAGCGAGAAGAACCTGAAGCTGACGATGAACAAAAGGTAATTCTATGTGTGAAATTCGTACAGATTGCTTGTTGCTTCAGTCATTTGCGATTCTGGCTCATGAGTTATGCCGAACAGTTTGTTCATGGCCGTGTCCTTAGTTTACAACATTACCTTGCCAGTCAAATTTCCTTCCATGCTGTCTGGTTAATGAGTTTTCTATCCCTTTATGCCCTCTATTTTTCATGTGTTTCTGTAGTGTCTTCCCCTCCTCACTCTCTGGTTCAAGAACGAATGTTATGGATCCAAAAAGAAATAGGAAAAGGAGTACAAGTAATTCTAGTCCACTAAGAGACCAAGGGGGATGACTGAACGGCCCTCTAGTTGTTTAATATTAAATAGTGAAATTACAAGAAAACCTTTTTGAGGTTTCACTACTTTGAGGCTTAAAACTAGTTAAAATCCTAACTCTAACCCATACGGATTGAATAATTCTCTTCTCTCCCCCAAAGATAGACACCATCATATAGCTGTGTAAGCCCATTCATATAAAGGCTTCAACTTGGTTAATTGAACAAACTATATCAGTAGAATTTGCCCGATCTCACCCTTTGAAGTTACAAAAATTGAAGAATATCCATATTCTTTCGGAAGAAGGGAAGTAGCATAAGTGGTGTATTTGGTTTTCATTATATGCACAAGTGATATGTTTGGTTTTCATTATACTTGTTGCAAAGAACTCACCAGCTTGGGAAATGATTGAACAGTGGTTGTTCTCCTAGCAATGGTCCACCGAGTATTTAACTTTCTACAAATTGCTGATAAAACAAAGACTTTCACCTTCTTAGGAGCTTTGAAGTTCCGTAGTTCATTGGAGAGTGATCTTGTAATAACCTCCAACTGCTTGGCAAGGCAGTCAAACAAAATCTTACTAGTGAATGTCCTTGGTTTATCTAATTTCTGAATTCGGTTATCACATTAGCTATTCTAACACACAAAAATCAATCTGTCGGTGAGGCTGGATCACCTCCACCTTTCTATGGATGAGGTTCCTCCTGAAATATTTTTCTAATATCTGCAAGTGTATTGGGTCAATTTTGTGCACTCCGACTAATCTTATGGGACAACTGCATTGCCTAGAAAATTTATAGGATTTTAAATCCTAGGAAGTAGCCACCATGATTTCTCTTGGCCATAACAAGCACTAGGCCTTGAATAGGAGATCTCAATTCTCAACCACCATCTTCCAATCCAAGTGCGCCATCAATGATTGTACTTGTTAATTGGAAGTATGACAATCTACTCTATCCTCCCATTCTAATGAAATCTCTTAATCGTCCATCAATCTTATCAACCTTCAACAGAATCGTGAAGATGTGAGAGATGGTGAATTTCTAAAGCTTTCGGGTTCAAAGGTGTGCATGATTGATATAGCTTCTTTCAAAAGAATGCCTTCATTGATCTTTGTAGCTCATTCTTCCCAAGATCTGATACCTAAAACTTATGAGACAGTAGGATTTCTTTGATGAGAATACAATTACGCGGATACCCTTGCTCCACCTTGGATCTTCATTGATTACAAAATTGGTCCTAGATAGATAGCAGTTAGAGAAAGGAACTCTGTCCATAAAGCAACACTTGAAGCTTCGATATACCAATCAAAGCTTTGTAGACGTTCCTTCTCAAGACTCTTCATGTCTATTGCATCTCAATCACTGTGAAAATCATTTGAGAGGGCAAGTCGTTGGAAAACGAAGCCTGCACTCAAGGCCATTGTTAGCACCAAACAGGTCCCCCCTTGGCCTTCCATTTAGTGGGGGATAGATCTGGTAGGAGCATTCCCAATTAGCGGTTGGGCAAAAGCAGCATTCAATTATGGACTTAAGATTAAAAGTTTTATCATTCAAGAATAGTTATGAAGTCTAGGCATTCTACTTTTGGGGCATTAAGCTTCAAATATTCTTATATCCTTTTTTTTACCCCGTGCAATTTCAGGCCAAGGATAATTCAACGGGTAGACCCACTTCCTCAACAAGTGCTGTGGATGATTCTGAGGATGTTCTCTTGGATGATGACGACGACGACGACGACGAACTAGATCTTGACGAGCTAAACGAGCTTGAGGCAAGTTTATCTAGAACGTCAATTCAGATCCGGGAGCCAGGTATTGAGCCCTCTTGAGACATTTGTTCATTACTGCGGAGTATGTGTTTGTAATCTAATCTGGTAAAGAATTGAAGAACATAATGGATTTGAGTTTATGTTCTCTTATTTAGAAGTGGAATGACTCCAATGGTTGCCATATAACATATTCAAATTTTGACTCCCTGTTCTTCTGTTTGCCCCTTTAGCCTCAGTGTAAACAAGCTATTACTGGTTTGCAATAATTTCGACTCCACTTGTAATTGTGCTCGTTTTTTCACCATTTCGTTAT

mRNA sequence

ATGTTTATTTGCTTATTCCAGCGTGCAAAAGTTAAAACCACTACTCCCATTACACCGGAGCTTTTCTTTCAATGGAAGAAGAAAAAGATGAATGAAAGAGATGCTGGTTTGGCTGCACAACAAGCAGAGAGAGCTAAGAATGATCGCATGAGTGGTCGGGAGTTGTTTCTTGCAAATGCAAGCTTGTTTGTGGATGACGCCGAGGCGTATGAAAAATATCAGCGAGAAGAACCTGAAGCTGACGATGAACAAAAGGCCAAGGATAATTCAACGGGTAGACCCACTTCCTCAACAAGTGCTGTGGATGATTCTGAGGATGTTCTCTTGGATGATGACGACGACGACGACGACGAACTAGATCTTGACGAGCTAAACGAGCTTGAGGCAAGTTTATCTAGAACGTCAATTCAGATCCGGGAGCCAGGTATTGAGCCCTCTTGAGACATTTGTTCATTACTGCGGAGTATGTGTTTGTAATCTAATCTGGTAAAGAATTGAAGAACATAATGGATTTGAGTTTATGTTCTCTTATTTAGAAGTGGAATGACTCCAATGGTTGCCATATAACATATTCAAATTTTGACTCCCTGTTCTTCTGTTTGCCCCTTTAGCCTCAGTGTAAACAAGCTATTACTGGTTTGCAATAATTTCGACTCCACTTGTAATTGTGCTCGTTTTTTCACCATTTCGTTAT

Coding sequence (CDS)

ATGTTTATTTGCTTATTCCAGCGTGCAAAAGTTAAAACCACTACTCCCATTACACCGGAGCTTTTCTTTCAATGGAAGAAGAAAAAGATGAATGAAAGAGATGCTGGTTTGGCTGCACAACAAGCAGAGAGAGCTAAGAATGATCGCATGAGTGGTCGGGAGTTGTTTCTTGCAAATGCAAGCTTGTTTGTGGATGACGCCGAGGCGTATGAAAAATATCAGCGAGAAGAACCTGAAGCTGACGATGAACAAAAGGCCAAGGATAATTCAACGGGTAGACCCACTTCCTCAACAAGTGCTGTGGATGATTCTGAGGATGTTCTCTTGGATGATGACGACGACGACGACGACGAACTAGATCTTGACGAGCTAAACGAGCTTGAGGCAAGTTTATCTAGAACGTCAATTCAGATCCGGGAGCCAGGTATTGAGCCCTCTTGA

Protein sequence

MFICLFQRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDDAEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNELEASLSRTSIQIREPGIEPS
Homology
[Close]
BLAST of CmaCh04G002610.1 vs. ExPASy Swiss-Prot
Match: Q9SK74 (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=At2g20280 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.6e-37
Identity = 93/144 (64.58%), Postives = 113/144 (78.47%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAK++T T +TP LF +WK+KK+ ERDAGLAA QAERAKNDRMSGRELFL+NASLFVDD
Sbjct: 227 ERAKLQTATQMTPALFMEWKRKKIAERDAGLAASQAERAKNDRMSGRELFLSNASLFVDD 286

Query: 67  AEAYEKYQREEPEADDEQKAKDN--STGRPTSSTSAVDDSEDV--LLDDDDDDDDELDLD 126
           AEA E+Y+RE  + + EQKAK+     G   SS  A   S++V    +DDDDDDD+LD+D
Sbjct: 287 AEACEEYEREREQEETEQKAKNKEAEAGTSKSSGDAEQSSKEVNEEEEDDDDDDDDLDMD 346

Query: 127 ELNELEASLSRTSIQIREPGIEPS 147
           EL+ELEASLS+TSIQIREP  E S
Sbjct: 347 ELDELEASLSKTSIQIREPNDEGS 370

[Close]
BLAST of CmaCh04G002610.1 vs. ExPASy Swiss-Prot
Match: Q0JHZ2 (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 5.2e-35
Identity = 87/139 (62.59%), Postives = 111/139 (79.86%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           QR KVKTTTP+T +LF +WK+KK  ER+AGLAA +AERAKNDRMSGRELF+A++S+FVDD
Sbjct: 227 QRKKVKTTTPMTTDLFMEWKRKKAEEREAGLAALRAERAKNDRMSGRELFMADSSVFVDD 286

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTS---AVDDSEDVLLDDDDDDDDELDLDE 126
           AEAY+ Y+R+E    +E+ +  N    P+SSTS    V++S+    D+D + DD+LD+DE
Sbjct: 287 AEAYDVYERQEESEANEEPSNKNQDEGPSSSTSNGKEVEESD----DEDINIDDDLDIDE 346

Query: 127 LNELEASLSRTSIQIREPG 143
           LNELEASLSRTSIQIREPG
Sbjct: 347 LNELEASLSRTSIQIREPG 361

[Close]
BLAST of CmaCh04G002610.1 vs. ExPASy Swiss-Prot
Match: Q54DA5 (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0292410 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAER-----AKNDRMSGRELFLANAS 66
           +RAK+  +TP+T E F +WK++K  +++      Q +R     A    MSGRE+F+ N  
Sbjct: 233 ERAKLTKSTPVTLETFLRWKEEKRLQKEKAAKDAQDKRLADIKAGKTSMSGREMFVFNPD 292

Query: 67  LFVDDAEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDL 124
           LFVDD  A +   +E  ++++E  A  N       +   V  S+D   DDDDDDDDE   
Sbjct: 293 LFVDDESAIDTKSKEYEKSEEEIAALANQINTSLFTDGGVLPSDDDDDDDDDDDDDEDGD 352

[Close]
BLAST of CmaCh04G002610.1 vs. ExPASy TrEMBL
Match: A0A6J1JHM5 (zinc finger CCCH domain-containing protein 11-like OS=Cucurbita maxima OX=3661 GN=LOC111485787 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.9e-65
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 223 ERAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 282

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE
Sbjct: 283 AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 342

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQIREPGIEPS
Sbjct: 343 LEASLSRTSIQIREPGIEPS 362

[Close]
BLAST of CmaCh04G002610.1 vs. ExPASy TrEMBL
Match: A0A6J1FQA9 (zinc finger CCCH domain-containing protein 11-like OS=Cucurbita moschata OX=3662 GN=LOC111447811 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.8e-62
Identity = 135/140 (96.43%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 223 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 282

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREEPEADDEQKA+DNSTGRPT+STSAVDDSEDVLL DDDDDDDELDLDELNE
Sbjct: 283 AEAYEKYQREEPEADDEQKAEDNSTGRPTTSTSAVDDSEDVLL-DDDDDDDELDLDELNE 342

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQIREPGIEPS
Sbjct: 343 LEASLSRTSIQIREPGIEPS 361

[Close]
BLAST of CmaCh04G002610.1 vs. ExPASy TrEMBL
Match: A0A1S3BDM3 (zinc finger CCCH domain-containing protein 11 OS=Cucumis melo OX=3656 GN=LOC103488739 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.1e-54
Identity = 123/140 (87.86%), Postives = 131/140 (93.57%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ER+AGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 225 ERAKVKTTTPITPELFFQWKKKKMDERNAGLAAQQAERAKNDRMSGRELFLANASLFVDD 284

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREE    DE KAKDNSTG P++ST+AVDDSEDVLL  D+DDDDELDLDELNE
Sbjct: 285 AEAYEKYQREEEPEADESKAKDNSTGGPSTSTNAVDDSEDVLL--DEDDDDELDLDELNE 344

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEA+LSRTSIQIREPGIE S
Sbjct: 345 LEATLSRTSIQIREPGIEAS 362

[Close]
BLAST of CmaCh04G002610.1 vs. ExPASy TrEMBL
Match: A0A6J1H1W4 (zinc finger CCCH domain-containing protein 11-like OS=Cucurbita moschata OX=3662 GN=LOC111458829 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.0e-54
Identity = 123/140 (87.86%), Postives = 130/140 (92.86%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 224 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 283

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREE    DE KAKDN+TG P++STSA+DDSEDVLL  D+DDDDELDLDELNE
Sbjct: 284 AEAYEKYQREEEPEADEPKAKDNATGGPSTSTSAIDDSEDVLL--DEDDDDELDLDELNE 343

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQI EPGIE S
Sbjct: 344 LEASLSRTSIQIGEPGIEAS 361

[Close]
BLAST of CmaCh04G002610.1 vs. ExPASy TrEMBL
Match: A0A6J1JJ07 (zinc finger CCCH domain-containing protein 11-like OS=Cucurbita maxima OX=3661 GN=LOC111486255 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.2e-54
Identity = 124/140 (88.57%), Postives = 129/140 (92.14%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 224 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 283

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREE    DE KAKDN TG P++STSAVDDSEDVLL  D+DDDDELDLDELNE
Sbjct: 284 AEAYEKYQREEEPEADEPKAKDNPTGGPSTSTSAVDDSEDVLL--DEDDDDELDLDELNE 343

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQI EPGIE S
Sbjct: 344 LEASLSRTSIQIGEPGIEAS 361

[Close]
BLAST of CmaCh04G002610.1 vs. NCBI nr
Match: XP_022988591.1 (zinc finger CCCH domain-containing protein 11-like [Cucurbita maxima])

HSP 1 Score: 257.3 bits (656), Expect = 8.0e-65
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 223 ERAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 282

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE
Sbjct: 283 AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 342

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQIREPGIEPS
Sbjct: 343 LEASLSRTSIQIREPGIEPS 362

[Close]
BLAST of CmaCh04G002610.1 vs. NCBI nr
Match: XP_023511761.1 (zinc finger CCCH domain-containing protein 11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 223 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 282

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREEPEADDEQKAKDNSTGRPT+STSAVDDSEDVLL  DDDDDDELDLDELNE
Sbjct: 283 AEAYEKYQREEPEADDEQKAKDNSTGRPTTSTSAVDDSEDVLL--DDDDDDELDLDELNE 342

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQIREPGIEPS
Sbjct: 343 LEASLSRTSIQIREPGIEPS 360

[Close]
BLAST of CmaCh04G002610.1 vs. NCBI nr
Match: XP_022942926.1 (zinc finger CCCH domain-containing protein 11-like [Cucurbita moschata])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 135/140 (96.43%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 223 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 282

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREEPEADDEQKA+DNSTGRPT+STSAVDDSEDVLL DDDDDDDELDLDELNE
Sbjct: 283 AEAYEKYQREEPEADDEQKAEDNSTGRPTTSTSAVDDSEDVLL-DDDDDDDELDLDELNE 342

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQIREPGIEPS
Sbjct: 343 LEASLSRTSIQIREPGIEPS 361

[Close]
BLAST of CmaCh04G002610.1 vs. NCBI nr
Match: KAG6600095.1 (Zinc finger CCCH domain-containing protein 11, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030767.1 Zinc finger CCCH domain-containing protein 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 223 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 282

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREEPEADDEQKAKDNSTGRPT+STSAVDDSEDVLL  DDDDDDELDLDELNE
Sbjct: 283 AEAYEKYQREEPEADDEQKAKDNSTGRPTTSTSAVDDSEDVLL--DDDDDDELDLDELNE 342

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQIREPGIEPS
Sbjct: 343 LEASLSRTSIQIREPGIEPS 360

[Close]
BLAST of CmaCh04G002610.1 vs. NCBI nr
Match: KAG7031850.1 (Zinc finger CCCH domain-containing protein 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.3 bits (573), Expect = 3.4e-55
Identity = 126/141 (89.36%), Postives = 132/141 (93.62%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 224 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 283

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLD-DDDDDDDELDLDELN 126
           AEAYEKYQREE    DE KAKDN+TG P++STSA+DDSEDVLLD DDDDDDDELDLDELN
Sbjct: 284 AEAYEKYQREEEPEADEPKAKDNATGGPSTSTSAIDDSEDVLLDEDDDDDDDELDLDELN 343

Query: 127 ELEASLSRTSIQIREPGIEPS 147
           ELEASLSRTSIQI EPGIE S
Sbjct: 344 ELEASLSRTSIQIGEPGIEAS 364

[Close]
BLAST of CmaCh04G002610.1 vs. TAIR 10
Match: AT2G20280.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 155.2 bits (391), Expect = 4.0e-38
Identity = 93/144 (64.58%), Postives = 113/144 (78.47%), Query Frame = 0 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAK++T T +TP LF +WK+KK+ ERDAGLAA QAERAKNDRMSGRELFL+NASLFVDD
Sbjct: 227 ERAKLQTATQMTPALFMEWKRKKIAERDAGLAASQAERAKNDRMSGRELFLSNASLFVDD 286

Query: 67  AEAYEKYQREEPEADDEQKAKDN--STGRPTSSTSAVDDSEDV--LLDDDDDDDDELDLD 126
           AEA E+Y+RE  + + EQKAK+     G   SS  A   S++V    +DDDDDDD+LD+D
Sbjct: 287 AEACEEYEREREQEETEQKAKNKEAEAGTSKSSGDAEQSSKEVNEEEEDDDDDDDDLDMD 346

Query: 127 ELNELEASLSRTSIQIREPGIEPS 147
           EL+ELEASLS+TSIQIREP  E S
Sbjct: 347 ELDELEASLSKTSIQIREPNDEGS 370

The following BLAST results are available for this feature:
BLAST of CmaCh04G002610.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SK745.6e-3764.58Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q0JHZ25.2e-3562.59Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica OX... [more]
Q54DA52.1e-0736.89Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideu... [more]
BLAST of CmaCh04G002610.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JHM53.9e-6599.29zinc finger CCCH domain-containing protein 11-like OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1FQA96.8e-6296.43zinc finger CCCH domain-containing protein 11-like OS=Cucurbita moschata OX=3662... [more]
A0A1S3BDM33.1e-5487.86zinc finger CCCH domain-containing protein 11 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A6J1H1W44.0e-5487.86zinc finger CCCH domain-containing protein 11-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1JJ075.2e-5488.57zinc finger CCCH domain-containing protein 11-like OS=Cucurbita maxima OX=3661 G... [more]
BLAST of CmaCh04G002610.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022988591.18.0e-6599.29zinc finger CCCH domain-containing protein 11-like [Cucurbita maxima][more]
XP_023511761.11.4e-6196.43zinc finger CCCH domain-containing protein 11-like [Cucurbita pepo subsp. pepo][more]
XP_022942926.11.4e-6196.43zinc finger CCCH domain-containing protein 11-like [Cucurbita moschata][more]
KAG6600095.11.4e-6196.43Zinc finger CCCH domain-containing protein 11, partial [Cucurbita argyrosperma s... [more]
KAG7031850.13.4e-5589.36Zinc finger CCCH domain-containing protein 11 [Cucurbita argyrosperma subsp. arg... [more]
BLAST of CmaCh04G002610.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G20280.14.0e-3864.58Zinc finger C-x8-C-x5-C-x3-H type family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.20.400.10coord: 6..61
e-value: 2.5E-12
score: 48.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..89
NoneNo IPR availablePANTHERPTHR12681:SF14ZINC FINGER, CCCH-TYPE, ZC3H15/TMA46 FAMILY-RELATEDcoord: 7..141
NoneNo IPR availablePANTHERPTHR12681ZINC FINGER-CONTAINING PROTEIN P48ZNFcoord: 7..141
IPR032378ZC3H15/TMA46 family, C-terminalPFAMPF16543DFRP_Ccoord: 7..79
e-value: 5.9E-15
score: 55.5

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh04G002610CmaCh04G002610gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G002610.1:exon:828CmaCh04G002610.1:exon:828exon
CmaCh04G002610.1:exon:829CmaCh04G002610.1:exon:829exon
CmaCh04G002610.1:exon:830CmaCh04G002610.1:exon:830exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G002610.1:cdsCmaCh04G002610.1:cdsCDS
CmaCh04G002610.1:cdsCmaCh04G002610.1:cds_2CDS
CmaCh04G002610.1:cdsCmaCh04G002610.1:cds_3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G002610.1:three_prime_utrCmaCh04G002610.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh04G002610.1CmaCh04G002610.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
cellular_component GO:0005829 cytosol
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding