CmaCh03G002810.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G002810.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr03: 3761793 .. 3764817 (-)
Sequence length267
RNA-Seq ExpressionCmaCh03G002810.1
SyntenyCmaCh03G002810.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTCTGTTGTATAACACGAGATCTTGGATTGAAAATAGTACAAAACGTTATTATTGATATGATCATTGTTGAAGTCTGTATATCCACTTCATAGTTATGAGTAGCAACACTAAGCTAAATGAACTTCACTTGTGTTTTCATAAGTACTAGGAGGCCGATGAGTTGGGCTCCTCTTAGCGTTCTATTTGGCCACTTCCCCCATAAGTATTTATAGATTTGAGTAAAAGAATGACCTAATACATACAAGGAAATAAACCAACACTCCCATTGCTTGACTCTGTTTTCTAAGTTTCTTAGAAGTTATGTATGTTTGATTTGTAGGTTTATTTGTCTCGAGTCATGGATTTCTAATGTACTGACTTCTATGAACTATACGTTTTTTTTTTTGTATGCTCGAATCGTTCTACTAGACTAAATGTCTTGTTTTAATTCATAGATTTTAATTTTTTTTCTAATCATATACGATCAAGAATTTGAAAATTTATCGAATCCTCAATACCCATCTTTGTCCATTCAAATATGTCTCGCTTCCTAAATTTATCTCTCTCCCACCAATGTTCCTAGGTTTTCGAAGATATTTCATGAAAGAATATGAATATCTTCTAGCGTACTACATGGATAAGTCGATATCAACATTAAGCTTCCTAGTTAGAGTATTTTCATGAATATGAAAATCTTCTAGTGTACTACATGGATAAGTTGATATCAACATTAAGCTTCCTAGTTAGAGTATTTTGTACTTTTAGGGACTTTTGGCATTTATGTTAGATATCTTAAGTTTAGATTGAAGATTTAGGAAGTGTTATGTATCTGAGTTTGAAGTAGAGATGGGCAGTGTGGAGATGGGGAAGCCTTACTCGACCCGTCCCCACCACCTATTTAATCCTCCATTCTTGCAAAATTCTTCAAGAGATTATTTGTGGATAATTTTTTCTCATATATATATATATATATATTGAAAATATATCTATATTAAGTGAAGGGGCGGGGACAGGAACTAGAATCTCGTCTCCAAACCCATTATCTAATAGGGAAAAATGTTTCCCCCTCTCTATCTCATTCTCTGTCTAATTGTAGAGGGGATTTCTTGTTTAGCGCGAGTCTTTGTCGGTAAAATGGACATCTTTTAGTTTACGATGTCTATTCATGTAATTTGAGTTTTTAAAGAGAGAAAATGAAAAAAAAAATGTAGGTCCTACTAAATTATAACAAATAAGTAGAAATTTATTGTTTAGATGATTACCCCGGGTTTTACTAAACCCATGCTCGGGCCAAATGACACCTTTGAAATAGCCAAATTTGAGAAAATAATTACCAAAACTACCCTTGGATTTTCTTAGATTTTAGTTGGATATATAATACAACAATAGTCAATGAACCCTTTTGTTGCCCTTTCCCATATCTTCTCAAAAGATAATAATAATAATAATAATCATAATTAAATGATTATGAAATTAGAGTAAAGCGATTATATAGAAGACTTTTAGGCATCCTCTTGATTATTCCTATTATAATATAATTAAAGAATGTTCAAATTTTCCTCCCACGTGCAAGACAACCTCTTTACGAGCTTCAATTGTCCCCCACGCGCCTTCTCACCAAGAAGAATTATTTAACAAACAATTATTTTTACCCAAATCATTTTATCATTTTTTTTTTCGTTTATTTAAATAAAATAATGGTAGACGTTGATAAAAATAATATATTTGAATTTTATATTTTGCTTAAAAATATATATTTAAATTTTTAATATTTTGATTTGGTCGTTATTTTTTAAATAAATCTAAATACGTGTTCGCATACCTTAAAAAAACACGTTATTCATCTATTAAATAATTTGTATTAAATTAAATACAAATAAATAAATTATAGTTTTTTGGTATATATAGTTTTCAAATGAGTATATATAGTTTTTTGGTCAAATATTTATTTACTAGTACTAACCTGACTTTAGGAGCGATTATGTTCATATTTTTAAAATAAAATAATATTAACGTAAATAATAATAAGGCTAAATTAATAAAAAAAAATAACATTTGAATATTTTTTAACTAAAAAAATTAAAAAACATTCTTAATGTAAACCATTAATATTTTATTTTAAAAATAATTTTAATGGTTAGAAGGGTAATAAATATTAAATTTTCAAAAATTTCATTAATACCAAACTTTAAAAAATATTCTTACGGTACCATATTTAAAAAATTCAGAAATATCTATAAGGATGGATAGATTATTATTATTATTATTATTATTATTTTATTATTTTATTTTTTAAAGTAAATGATATTTTTAAAATTTAATGATTGGTCTAATATTAACTATTATTATTATTATTATTATTATTTAGCTTTTAAAAAAATTTAAGCATGTTAAATGAATTTTTTTAAAGTTAAAATATATATTTGAAATATTTTGAAAGTTTAAATGGTATTTTTGATAGATGTAATTTTTTGTTTAAAAATAATTTAAAGTATTATCAGCATATTTGATAATAACAATTTAATAATAATACAAAACAAAGTTTTAATAATAATTTTAAAATGATGAATTTTAATGATTGGTTTGATAAGCCCACTCTCGAAAGAGCGCGTGGAGTTTACATCATCGTCGAGATACAGAAAAGTCAACAACAACCTCTGCGCTGGTTCAACTTCACAGAGAGAAGAGAGAGAGAGAGAGAATCGGCGATGGTGTTGCTGTCAATGGGTGGGCTCTAATGTGAAGCAAAAGCAAAAAAATATTAGTAAATTGGAAGCGCCAACGAAACCTCCACAATGTCGCTTTCCCCTTTCATCCGATGCCCCCATTTTCAAACTCACTTTCCTTTTCTACTGCCCATCCTTCTTACTTGCTCTAACCTTCAATCTCCTACAGGTCTCAATTCTATGAGTTTTTTTTCTGATTTCGATGGATTTTGTGTTGAATTTGTAGAATCTGATTGCGTATTTTTCTTTGTGGCTAATGGTTTGAAATTGGTAGGAATTCGTTTCTTTGCTTGTGATGCTGTTTGGAAGCTAA

mRNA sequence

ATGTTCTTCTGTTGTATAACACGAGATCTTGGATTGAAAATAGTACAAAACGTTATTATTGATATGATCATTGTTGAACAAAAGCAAAAAAATATTAGTAAATTGGAAGCGCCAACGAAACCTCCACAATGTCGCTTTCCCCTTTCATCCGATGCCCCCATTTTCAAACTCACTTTCCTTTTCTACTGCCCATCCTTCTTACTTGCTCTAACCTTCAATCTCCTACAGGAATTCGTTTCTTTGCTTGTGATGCTGTTTGGAAGCTAA

Coding sequence (CDS)

ATGTTCTTCTGTTGTATAACACGAGATCTTGGATTGAAAATAGTACAAAACGTTATTATTGATATGATCATTGTTGAACAAAAGCAAAAAAATATTAGTAAATTGGAAGCGCCAACGAAACCTCCACAATGTCGCTTTCCCCTTTCATCCGATGCCCCCATTTTCAAACTCACTTTCCTTTTCTACTGCCCATCCTTCTTACTTGCTCTAACCTTCAATCTCCTACAGGAATTCGTTTCTTTGCTTGTGATGCTGTTTGGAAGCTAA

Protein sequence

MFFCCITRDLGLKIVQNVIIDMIIVEQKQKNISKLEAPTKPPQCRFPLSSDAPIFKLTFLFYCPSFLLALTFNLLQEFVSLLVMLFGS
Homology
[Close]
BLAST of CmaCh03G002810.1 vs. NCBI nr
Match: KAG6603523.1 (putative acetyltransferase TAP2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.5 bits (267), Expect = 6.1e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 34  KLEAPTKPPQCRFPLSSDAPIFKLTFLFYCPSFLLALTFNLLQEFVSLLVMLFGS 89
           KLEAPTKPPQCR+PLSSDAPIFKLTFLFYCPSFLLALTFNLLQEFVSLLVMLFGS
Sbjct: 270 KLEAPTKPPQCRYPLSSDAPIFKLTFLFYCPSFLLALTFNLLQEFVSLLVMLFGS 324

The following BLAST results are available for this feature:
BLAST of CmaCh03G002810.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G002810.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G002810.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6603523.16.1e-2098.18putative acetyltransferase TAP2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh03G002810.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 88..88

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh03G002810CmaCh03G002810gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh03G002810.1:exon:414CmaCh03G002810.1:exon:414exon
CmaCh03G002810.1:exon:413CmaCh03G002810.1:exon:413exon
CmaCh03G002810.1:exon:412CmaCh03G002810.1:exon:412exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh03G002810.1:cdsCmaCh03G002810.1:cds_3CDS
CmaCh03G002810.1:cdsCmaCh03G002810.1:cds_2CDS
CmaCh03G002810.1:cdsCmaCh03G002810.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh03G002810.1CmaCh03G002810.1-proteinpolypeptide