CmaCh02G016110.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G016110.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionMicrospore-specific promoter 2, putative
LocationCma_Chr02: 9164156 .. 9165742 (+)
Sequence length1049
RNA-Seq ExpressionCmaCh02G016110.1
SyntenyCmaCh02G016110.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACACTAAAAACCCTCACAAACAACCACAAAACTAAACAACATACCCATTTCTCCAAGAAACCAAAAGCTCCGATCCAATCCAATGGAGGATTATGCAAAGCTACAACCCCATCATCCACAACATTCCTCATCTTCTTCCTCAATGACCCTTTTTTCCAGATTAGATTACATGGATTTGGTTGTAAGTTCCTCTGTTTTTTTTCTTGTAAATAGTTATTTAGAGGTTCACTTACATATGGGGGTGTGTTATTTTTTGCATAGATGAAGTATTTGGAGAAAAAACAGAGGTTGGAAAGAGTGGGAGGCGTGGAAAAGAAGTGCATATCTTTGGATGTTGCACTAAAAGATACTTACTTTAAAGGTTCATTGTTGGATCGAGTGGCATCTCTTGAGCACAGACTTTTCCAGGTTCAAATATTCCTCCTTCATAACATGTTCTTTCTTTTTCATCATCTTTCTCAAATTATTTCTTGCCTTAATTGGCAGCTATGTTTGGAGATGGATTCAGGCAGCTCCTCAAATCCTTCATCATTAGGTTCAACACAGACATCAGCTGATATCAGTTCATCTTCTCCAACTCCTAAACAGTTTTGCAGAGGGGAGCCATCGTCTTCATACCCCATATTCCATTATCCCAGCCATGGAGGAACCTCAAAAATTTCCCAAATTCAGGTTTAAAGAGAAAAAAAAAAGACAATAATTGCTAGCAGACAAAGATTTGGAAAGAGGAATAAATTAACAAGAAATAAAATGATCCAGCAATTATATTCCTTTGCCTCAAGTTGGGGGGGTAATCAATTAAGCATTATGCTTTTGCTTTTGCTTTTCTTTTTCCTGTCATGAAACTTTTTGAGTCAAGTTGATGTTGTTTGAGGCATTGAATATTTTGGTGTTGGTTGGAAGCTGATGCTGATACTGATAATGACAGTGAGTACACTGAGCATCGTTACGGTCAAACGAACGATGTCGATCCGTATATAATCGATGGGTTGTGGGTTGTGTTTTGATATATTCCTTAGAATCTAAGCTCCCCTTTTTTTGTCATTTGATAGGAGAAGCCTCAAACTCAAAGACATGAACAGAAAAAGAAGCAACAGAGTCCTCCAAAAAGGCAACTTGGTAAGACGAGGAGTGGAAAGGATGAAGGAGGATCTTGCAAAAATGTCAAGAAAGGGATTCCTCCCAAATGGCTACACTTGAGGATGTTTGGTTGCTAATGCTTTTCTTCCTTCCTCCTCCTTTTTCCCAAGAACACAATTCTCCATGTTTCGAGAAATGTTCGCTTTAGTTTTTGAGTTTGGTGGTGATTTAGTATAATATCAACCTACGAACATAGAGCTTCGAATACACTATATCCAATGATAATGTACTTTGAATATAATATCTTGATAACTGACCTTGCATTCTAATTCTCGCATAATTTAGGGCATTTTTACTAACAAAAAGATGTTTATAGTGATTTTGTGGTCACATTAGATGCTGGATTTTGAAATACTGGATCTTGAAGGAGGTCACATTGGATGCTGGATTTTGAAATACTGGATCTTGAAGGAGGTCACATTGGATGCTGGATTTTGAAATACTGG

mRNA sequence

CACACTAAAAACCCTCACAAACAACCACAAAACTAAACAACATACCCATTTCTCCAAGAAACCAAAAGCTCCGATCCAATCCAATGGAGGATTATGCAAAGCTACAACCCCATCATCCACAACATTCCTCATCTTCTTCCTCAATGACCCTTTTTTCCAGATTAGATTACATGGATTTGGTTATGAAGTATTTGGAGAAAAAACAGAGGTTGGAAAGAGTGGGAGGCGTGGAAAAGAAGTGCATATCTTTGGATGTTGCACTAAAAGATACTTACTTTAAAGGTTCATTGTTGGATCGAGTGGCATCTCTTGAGCACAGACTTTTCCAGCTATGTTTGGAGATGGATTCAGGCAGCTCCTCAAATCCTTCATCATTAGGTTCAACACAGACATCAGCTGATATCAGTTCATCTTCTCCAACTCCTAAACAGTTTTGCAGAGGGGAGCCATCGTCTTCATACCCCATATTCCATTATCCCAGCCATGGAGGAACCTCAAAAATTTCCCAAATTCAGGAGAAGCCTCAAACTCAAAGACATGAACAGAAAAAGAAGCAACAGAGTCCTCCAAAAAGGCAACTTGGTAAGACGAGGAGTGGAAAGGATGAAGGAGGATCTTGCAAAAATGTCAAGAAAGGGATTCCTCCCAAATGGCTACACTTGAGGATGTTTGGTTGCTAATGCTTTTCTTCCTTCCTCCTCCTTTTTCCCAAGAACACAATTCTCCATGTTTCGAGAAATGTTCGCTTTAGTTTTTGAGTTTGGTGGTGATTTAGTATAATATCAACCTACGAACATAGAGCTTCGAATACACTATATCCAATGATAATGTACTTTGAATATAATATCTTGATAACTGACCTTGCATTCTAATTCTCGCATAATTTAGGGCATTTTTACTAACAAAAAGATGTTTATAGTGATTTTGTGGTCACATTAGATGCTGGATTTTGAAATACTGGATCTTGAAGGAGGTCACATTGGATGCTGGATTTTGAAATACTGGATCTTGAAGGAGGTCACATTGGATGCTGGATTTTGAAATACTGG

Coding sequence (CDS)

ATGGAGGATTATGCAAAGCTACAACCCCATCATCCACAACATTCCTCATCTTCTTCCTCAATGACCCTTTTTTCCAGATTAGATTACATGGATTTGGTTATGAAGTATTTGGAGAAAAAACAGAGGTTGGAAAGAGTGGGAGGCGTGGAAAAGAAGTGCATATCTTTGGATGTTGCACTAAAAGATACTTACTTTAAAGGTTCATTGTTGGATCGAGTGGCATCTCTTGAGCACAGACTTTTCCAGCTATGTTTGGAGATGGATTCAGGCAGCTCCTCAAATCCTTCATCATTAGGTTCAACACAGACATCAGCTGATATCAGTTCATCTTCTCCAACTCCTAAACAGTTTTGCAGAGGGGAGCCATCGTCTTCATACCCCATATTCCATTATCCCAGCCATGGAGGAACCTCAAAAATTTCCCAAATTCAGGAGAAGCCTCAAACTCAAAGACATGAACAGAAAAAGAAGCAACAGAGTCCTCCAAAAAGGCAACTTGGTAAGACGAGGAGTGGAAAGGATGAAGGAGGATCTTGCAAAAATGTCAAGAAAGGGATTCCTCCCAAATGGCTACACTTGAGGATGTTTGGTTGCTAA

Protein sequence

MEDYAKLQPHHPQHSSSSSSMTLFSRLDYMDLVMKYLEKKQRLERVGGVEKKCISLDVALKDTYFKGSLLDRVASLEHRLFQLCLEMDSGSSSNPSSLGSTQTSADISSSSPTPKQFCRGEPSSSYPIFHYPSHGGTSKISQIQEKPQTQRHEQKKKQQSPPKRQLGKTRSGKDEGGSCKNVKKGIPPKWLHLRMFGC
Homology
[Close]
BLAST of CmaCh02G016110.1 vs. TAIR 10
Match: AT5G46795.1 (microspore-specific promoter 2 )

HSP 1 Score: 81.6 bits (200), Expect = 7.6e-16
Identity = 65/197 (32.99%), Postives = 107/197 (54.31%), Query Frame = 0 

Query: 13  QHSSSSSSMTLFSRLDYMDLVMKYLEKKQRL----ERVGGVEKKCISLDVALKDTYFKGS 72
           Q   S SS+ + SRL+++D V+K LE++Q L    +      +  I    A+++ YFKGS
Sbjct: 6   QQKHSLSSLPMLSRLEHLDFVIKNLERQQNLPKWKDESAPTTRGLIDRGTAIREAYFKGS 65

Query: 73  LLDRVASLEHRLFQLCLEMDSGSSSNPSSLGSTQTSA-----DISSSSPTPKQFCRGEPS 132
           LLDR+A+LE RLFQ+CLE++S S S+ S+ GS +TS+     D++ + P          S
Sbjct: 66  LLDRIAALETRLFQICLELESSSGSSTSTGGSGETSSQRIKRDLTKTLPI--------FS 125

Query: 133 SSYPIFHYPSHGGTSKISQIQEKPQTQRHEQKKKQQSPPKRQLGKTRSGKDEGGSCKNVK 192
           S+   FH P       + +++EK + ++ E+   ++   +++  KT+   D   +CK  K
Sbjct: 126 SNINPFHVPLQ-HPQDLREMEEKIEEEKEEEINVEKPLLEKKNKKTKK-NDANETCKPKK 185

Query: 193 KGI--PPKWLHLRMFGC 199
           K    P KW    + GC
Sbjct: 186 KKTKSPKKWSRFSLLGC 192

The following BLAST results are available for this feature:
BLAST of CmaCh02G016110.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh02G016110.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G46795.17.6e-1632.99microspore-specific promoter 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..186
NoneNo IPR availablePANTHERPTHR34190:SF3MICROSPORE-SPECIFIC PROMOTER 2coord: 14..198
NoneNo IPR availablePANTHERPTHR34190EXPRESSED PROTEINcoord: 14..198

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh02G016110CmaCh02G016110gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G016110.1:exon:1747CmaCh02G016110.1:exon:1747exon
CmaCh02G016110.1:exon:1748CmaCh02G016110.1:exon:1748exon
CmaCh02G016110.1:exon:1749CmaCh02G016110.1:exon:1749exon
CmaCh02G016110.1:exon:1750CmaCh02G016110.1:exon:1750exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G016110.1:five_prime_utrCmaCh02G016110.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G016110.1:cdsCmaCh02G016110.1:cdsCDS
CmaCh02G016110.1:cdsCmaCh02G016110.1:cds_2CDS
CmaCh02G016110.1:cdsCmaCh02G016110.1:cds_3CDS
CmaCh02G016110.1:cdsCmaCh02G016110.1:cds_4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G016110.1:three_prime_utrCmaCh02G016110.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh02G016110.1CmaCh02G016110.1-proteinpolypeptide