CmaCh02G016110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G016110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Microspore-specific promoter 2, putative
Location	Cma_Chr02: 9164156 .. 9165742 (+)
RNA-Seq Expression	CmaCh02G016110
Synteny	CmaCh02G016110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACACTAAAAACCCTCACAAACAACCACAAAACTAAACAACATACCCATTTCTCCAAGAAACCAAAAGCTCCGATCCAATCCAATGGAGGATTATGCAAAGCTACAACCCCATCATCCACAACATTCCTCATCTTCTTCCTCAATGACCCTTTTTTCCAGATTAGATTACATGGATTTGGTTGTAAGTTCCTCTGTTTTTTTTCTTGTAAATAGTTATTTAGAGGTTCACTTACATATGGGGGTGTGTTATTTTTTGCATAGATGAAGTATTTGGAGAAAAAACAGAGGTTGGAAAGAGTGGGAGGCGTGGAAAAGAAGTGCATATCTTTGGATGTTGCACTAAAAGATACTTACTTTAAAGGTTCATTGTTGGATCGAGTGGCATCTCTTGAGCACAGACTTTTCCAGGTTCAAATATTCCTCCTTCATAACATGTTCTTTCTTTTTCATCATCTTTCTCAAATTATTTCTTGCCTTAATTGGCAGCTATGTTTGGAGATGGATTCAGGCAGCTCCTCAAATCCTTCATCATTAGGTTCAACACAGACATCAGCTGATATCAGTTCATCTTCTCCAACTCCTAAACAGTTTTGCAGAGGGGAGCCATCGTCTTCATACCCCATATTCCATTATCCCAGCCATGGAGGAACCTCAAAAATTTCCCAAATTCAGGTTTAAAGAGAAAAAAAAAAGACAATAATTGCTAGCAGACAAAGATTTGGAAAGAGGAATAAATTAACAAGAAATAAAATGATCCAGCAATTATATTCCTTTGCCTCAAGTTGGGGGGGTAATCAATTAAGCATTATGCTTTTGCTTTTGCTTTTCTTTTTCCTGTCATGAAACTTTTTGAGTCAAGTTGATGTTGTTTGAGGCATTGAATATTTTGGTGTTGGTTGGAAGCTGATGCTGATACTGATAATGACAGTGAGTACACTGAGCATCGTTACGGTCAAACGAACGATGTCGATCCGTATATAATCGATGGGTTGTGGGTTGTGTTTTGATATATTCCTTAGAATCTAAGCTCCCCTTTTTTTGTCATTTGATAGGAGAAGCCTCAAACTCAAAGACATGAACAGAAAAAGAAGCAACAGAGTCCTCCAAAAAGGCAACTTGGTAAGACGAGGAGTGGAAAGGATGAAGGAGGATCTTGCAAAAATGTCAAGAAAGGGATTCCTCCCAAATGGCTACACTTGAGGATGTTTGGTTGCTAATGCTTTTCTTCCTTCCTCCTCCTTTTTCCCAAGAACACAATTCTCCATGTTTCGAGAAATGTTCGCTTTAGTTTTTGAGTTTGGTGGTGATTTAGTATAATATCAACCTACGAACATAGAGCTTCGAATACACTATATCCAATGATAATGTACTTTGAATATAATATCTTGATAACTGACCTTGCATTCTAATTCTCGCATAATTTAGGGCATTTTTACTAACAAAAAGATGTTTATAGTGATTTTGTGGTCACATTAGATGCTGGATTTTGAAATACTGGATCTTGAAGGAGGTCACATTGGATGCTGGATTTTGAAATACTGGATCTTGAAGGAGGTCACATTGGATGCTGGATTTTGAAATACTGG

mRNA sequence

CACACTAAAAACCCTCACAAACAACCACAAAACTAAACAACATACCCATTTCTCCAAGAAACCAAAAGCTCCGATCCAATCCAATGGAGGATTATGCAAAGCTACAACCCCATCATCCACAACATTCCTCATCTTCTTCCTCAATGACCCTTTTTTCCAGATTAGATTACATGGATTTGGTTATGAAGTATTTGGAGAAAAAACAGAGGTTGGAAAGAGTGGGAGGCGTGGAAAAGAAGTGCATATCTTTGGATGTTGCACTAAAAGATACTTACTTTAAAGGTTCATTGTTGGATCGAGTGGCATCTCTTGAGCACAGACTTTTCCAGCTATGTTTGGAGATGGATTCAGGCAGCTCCTCAAATCCTTCATCATTAGGTTCAACACAGACATCAGCTGATATCAGTTCATCTTCTCCAACTCCTAAACAGTTTTGCAGAGGGGAGCCATCGTCTTCATACCCCATATTCCATTATCCCAGCCATGGAGGAACCTCAAAAATTTCCCAAATTCAGGAGAAGCCTCAAACTCAAAGACATGAACAGAAAAAGAAGCAACAGAGTCCTCCAAAAAGGCAACTTGGTAAGACGAGGAGTGGAAAGGATGAAGGAGGATCTTGCAAAAATGTCAAGAAAGGGATTCCTCCCAAATGGCTACACTTGAGGATGTTTGGTTGCTAATGCTTTTCTTCCTTCCTCCTCCTTTTTCCCAAGAACACAATTCTCCATGTTTCGAGAAATGTTCGCTTTAGTTTTTGAGTTTGGTGGTGATTTAGTATAATATCAACCTACGAACATAGAGCTTCGAATACACTATATCCAATGATAATGTACTTTGAATATAATATCTTGATAACTGACCTTGCATTCTAATTCTCGCATAATTTAGGGCATTTTTACTAACAAAAAGATGTTTATAGTGATTTTGTGGTCACATTAGATGCTGGATTTTGAAATACTGGATCTTGAAGGAGGTCACATTGGATGCTGGATTTTGAAATACTGGATCTTGAAGGAGGTCACATTGGATGCTGGATTTTGAAATACTGG

Coding sequence (CDS)

ATGGAGGATTATGCAAAGCTACAACCCCATCATCCACAACATTCCTCATCTTCTTCCTCAATGACCCTTTTTTCCAGATTAGATTACATGGATTTGGTTATGAAGTATTTGGAGAAAAAACAGAGGTTGGAAAGAGTGGGAGGCGTGGAAAAGAAGTGCATATCTTTGGATGTTGCACTAAAAGATACTTACTTTAAAGGTTCATTGTTGGATCGAGTGGCATCTCTTGAGCACAGACTTTTCCAGCTATGTTTGGAGATGGATTCAGGCAGCTCCTCAAATCCTTCATCATTAGGTTCAACACAGACATCAGCTGATATCAGTTCATCTTCTCCAACTCCTAAACAGTTTTGCAGAGGGGAGCCATCGTCTTCATACCCCATATTCCATTATCCCAGCCATGGAGGAACCTCAAAAATTTCCCAAATTCAGGAGAAGCCTCAAACTCAAAGACATGAACAGAAAAAGAAGCAACAGAGTCCTCCAAAAAGGCAACTTGGTAAGACGAGGAGTGGAAAGGATGAAGGAGGATCTTGCAAAAATGTCAAGAAAGGGATTCCTCCCAAATGGCTACACTTGAGGATGTTTGGTTGCTAA

Protein sequence

MEDYAKLQPHHPQHSSSSSSMTLFSRLDYMDLVMKYLEKKQRLERVGGVEKKCISLDVALKDTYFKGSLLDRVASLEHRLFQLCLEMDSGSSSNPSSLGSTQTSADISSSSPTPKQFCRGEPSSSYPIFHYPSHGGTSKISQIQEKPQTQRHEQKKKQQSPPKRQLGKTRSGKDEGGSCKNVKKGIPPKWLHLRMFGC

Homology

[Close]

BLAST of CmaCh02G016110 vs. TAIR 10
Match: AT5G46795.1 (microspore-specific promoter 2 )

HSP 1 Score: 81.6 bits (200), Expect = 7.6e-16
Identity = 65/197 (32.99%), Postives = 107/197 (54.31%), Query Frame = 0


Query: 13  QHSSSSSSMTLFSRLDYMDLVMKYLEKKQRL----ERVGGVEKKCISLDVALKDTYFKGS 72
           Q   S SS+ + SRL+++D V+K LE++Q L    +      +  I    A+++ YFKGS
Sbjct: 6   QQKHSLSSLPMLSRLEHLDFVIKNLERQQNLPKWKDESAPTTRGLIDRGTAIREAYFKGS 65

Query: 73  LLDRVASLEHRLFQLCLEMDSGSSSNPSSLGSTQTSA-----DISSSSPTPKQFCRGEPS 132
           LLDR+A+LE RLFQ+CLE++S S S+ S+ GS +TS+     D++ + P          S
Sbjct: 66  LLDRIAALETRLFQICLELESSSGSSTSTGGSGETSSQRIKRDLTKTLPI--------FS 125

Query: 133 SSYPIFHYPSHGGTSKISQIQEKPQTQRHEQKKKQQSPPKRQLGKTRSGKDEGGSCKNVK 192
           S+   FH P       + +++EK + ++ E+   ++   +++  KT+   D   +CK  K
Sbjct: 126 SNINPFHVPLQ-HPQDLREMEEKIEEEKEEEINVEKPLLEKKNKKTKK-NDANETCKPKK 185

Query: 193 KGI--PPKWLHLRMFGC 199
           K    P KW    + GC
Sbjct: 186 KKTKSPKKWSRFSLLGC 192

The following BLAST results are available for this feature:

BLAST of CmaCh02G016110 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G016110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46795.1	7.6e-16	32.99	microspore-specific promoter 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..186
None	No IPR available	PANTHER	PTHR34190:SF3	MICROSPORE-SPECIFIC PROMOTER 2	coord: 14..198
None	No IPR available	PANTHER	PTHR34190	EXPRESSED PROTEIN	coord: 14..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G016110.1	CmaCh02G016110.1	mRNA