CmaCh02G009820.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G009820.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionethylene-responsive transcription factor ERF106-like
LocationCma_Chr02: 5854617 .. 5855150 (-)
Sequence length534
RNA-Seq ExpressionCmaCh02G009820.1
SyntenyCmaCh02G009820.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTGCAAGAAGAAGACGATTTCTCACGGTTGAAGTTCATCCAACGCCATCGTCTCCAAGATCCCGATTCCTTCCGCACTCTCCTGGATTTCGAGTTCCCGTTACCATCCGCCTTCTTCTCTCTCCCGTCGATCAAATTCGAATTCGAAGATTTCGAGTTCATGAAACCGTTGGAAGAGGAAGAGCCTCCGATTCAGAAGCCGGAACAATCGGAGCGATCGAGCTCTCCAGAAGTGGCGATCGCAGAAGAGGTGTTGAGTTCCGACGGCGGGAGGAGGTACAGAGGTGTACGACGGCGGCCGTGGGGGAAGTTCGTGGCGGAGATTCGAGATCCGAGTAGAAAAGGGAGTAGGGTTTGGTTGGGGACTTTTAATTCGGATGTTGAGGCGGCTAGGGCTTACGATTCGGCTGCGTTTAGAATGAGGGGAAGAAAGGCTAAGTTGAATTTTCCGTTGGATGCCGGGAAGTCTTGGCTGCCGCCGCCGCCGCCAGGAAATGGGCGGAACAGGAGAAAGACGAAAGTAAATTAA

mRNA sequence

ATGGAACTGCAAGAAGAAGACGATTTCTCACGGTTGAAGTTCATCCAACGCCATCGTCTCCAAGATCCCGATTCCTTCCGCACTCTCCTGGATTTCGAGTTCCCGTTACCATCCGCCTTCTTCTCTCTCCCGTCGATCAAATTCGAATTCGAAGATTTCGAGTTCATGAAACCGTTGGAAGAGGAAGAGCCTCCGATTCAGAAGCCGGAACAATCGGAGCGATCGAGCTCTCCAGAAGTGGCGATCGCAGAAGAGGTGTTGAGTTCCGACGGCGGGAGGAGGTACAGAGGTGTACGACGGCGGCCGTGGGGGAAGTTCGTGGCGGAGATTCGAGATCCGAGTAGAAAAGGGAGTAGGGTTTGGTTGGGGACTTTTAATTCGGATGTTGAGGCGGCTAGGGCTTACGATTCGGCTGCGTTTAGAATGAGGGGAAGAAAGGCTAAGTTGAATTTTCCGTTGGATGCCGGGAAGTCTTGGCTGCCGCCGCCGCCGCCAGGAAATGGGCGGAACAGGAGAAAGACGAAAGTAAATTAA

Coding sequence (CDS)

ATGGAACTGCAAGAAGAAGACGATTTCTCACGGTTGAAGTTCATCCAACGCCATCGTCTCCAAGATCCCGATTCCTTCCGCACTCTCCTGGATTTCGAGTTCCCGTTACCATCCGCCTTCTTCTCTCTCCCGTCGATCAAATTCGAATTCGAAGATTTCGAGTTCATGAAACCGTTGGAAGAGGAAGAGCCTCCGATTCAGAAGCCGGAACAATCGGAGCGATCGAGCTCTCCAGAAGTGGCGATCGCAGAAGAGGTGTTGAGTTCCGACGGCGGGAGGAGGTACAGAGGTGTACGACGGCGGCCGTGGGGGAAGTTCGTGGCGGAGATTCGAGATCCGAGTAGAAAAGGGAGTAGGGTTTGGTTGGGGACTTTTAATTCGGATGTTGAGGCGGCTAGGGCTTACGATTCGGCTGCGTTTAGAATGAGGGGAAGAAAGGCTAAGTTGAATTTTCCGTTGGATGCCGGGAAGTCTTGGCTGCCGCCGCCGCCGCCAGGAAATGGGCGGAACAGGAGAAAGACGAAAGTAAATTAA

Protein sequence

MELQEEDDFSRLKFIQRHRLQDPDSFRTLLDFEFPLPSAFFSLPSIKFEFEDFEFMKPLEEEEPPIQKPEQSERSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRKGSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNGRNRRKTKVN
Homology
[Close]
BLAST of CmaCh02G009820.1 vs. ExPASy Swiss-Prot
Match: Q9LY05 (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana OX=3702 GN=ERF106 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.0e-29
Identity = 82/188 (43.62%), Postives = 108/188 (57.45%), Query Frame = 0 

Query: 7   DDFSRLKFIQRHRLQD---PDSFRTLLDFEFPLPSAFFSL-PSIKFEFEDFEFMKPLEEE 66
           ++ S L+ IQ H L+D    D F    DF+    S  + + P +  +  D   + P    
Sbjct: 5   EESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGLWCIEPHVPKQEPDSPVLDPDSFV 64

Query: 67  EPPIQKPEQSERSSSPEVAIAEEVLSSD-------------GGRRYRGVRRRPWGKFVAE 126
              +Q   +S  SSSPE+  +     +D               R YRGVRRRPWGKF AE
Sbjct: 65  NEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAE 124

Query: 127 IRDPSRKGSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNGR 178
           IRDP++KGSR+WLGTF SDV+AARAYD AAF++RGRKA LNFPLDAGK      P  +GR
Sbjct: 125 IRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKY---EAPANSGR 184

[Close]
BLAST of CmaCh02G009820.1 vs. ExPASy Swiss-Prot
Match: Q9FKG2 (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana OX=3702 GN=ERF107 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.3e-27
Identity = 90/196 (45.92%), Postives = 111/196 (56.63%), Query Frame = 0 

Query: 1   MELQEEDDFSRLKFIQRHRLQD---PDSFRTLLDFEFPLPSAFFSLPSIKFEFEDFEFMK 60
           ME  EE   S L  IQ+H  +D   PD F  + DF F   +AF    S  +  E F  + 
Sbjct: 1   METFEES--SDLDVIQKHLFEDLMIPDGF--IEDFVFD-DTAFV---SGLWSLEPFNPVP 60

Query: 61  PLEEEEPP----------IQKPEQSERSSSPEVAIAEEVLSS-------DGGRRYRGVRR 120
            LE   P           +Q   +S  SSS   +   E +S+       +  R YRGVRR
Sbjct: 61  KLEPSSPVLDPDSYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRR 120

Query: 121 RPWGKFVAEIRDPSRKGSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWL 177
           RPWGKF AEIRDP++KGSR+WLGTF SD++AARAYD AAF++RGRKA LNFPLDAGK   
Sbjct: 121 RPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKY-- 180

[Close]
BLAST of CmaCh02G009820.1 vs. ExPASy Swiss-Prot
Match: O80341 (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=ERF5 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-24
Identity = 74/171 (43.27%), Postives = 101/171 (59.06%), Query Frame = 0 

Query: 29  LLDFEFPLPSAFFSLPSIKFEFE------DFEFMKPLEEEE-------------PP--IQ 88
           ++D + P    F S+P   FEF+      DF+F KP  + +             PP  I 
Sbjct: 70  IIDLDTPRSMEFLSIP---FEFDSEVSVSDFDF-KPSNQNQNQFEPELKSQIRKPPLKIS 129

Query: 89  KPEQSE------RSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRKGSRVW 148
            P ++E       ++ PEV    + +S +  + YRGVR+RPWGKF AEIRDP+++GSRVW
Sbjct: 130 LPAKTEWIQFAAENTKPEVT---KPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVW 189

Query: 149 LGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNGRNRR 173
           LGTF++ +EAARAYD AAFR+RG KA LNFPL+ GK W P    G  + +R
Sbjct: 190 LGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGK-WKPRADEGEKKRKR 232

[Close]
BLAST of CmaCh02G009820.1 vs. ExPASy Swiss-Prot
Match: Q8VZ91 (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=ERF6 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-23
Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 0 

Query: 57  KPLEEEEPPIQKPEQSERSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRK 116
           KP  +  PP +       + +P+  +   V++++  R YRGVR RPWGKF AEIRDP+R+
Sbjct: 99  KPPLKIAPPNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRR 158

Query: 117 GSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNG-RNRRK 174
           G+RVWLGTF + +EAARAYD  AFR+RG KA LNFPL+  K W P    G G  N+RK
Sbjct: 159 GTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDK-WNPRAEDGRGLYNKRK 215

[Close]
BLAST of CmaCh02G009820.1 vs. ExPASy Swiss-Prot
Match: Q8VY90 (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana OX=3702 GN=ERF105 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.6e-22
Identity = 66/154 (42.86%), Postives = 86/154 (55.84%), Query Frame = 0 

Query: 4   QEEDDFSRLKFIQRHRLQDPDSFRTLLDFEFPLPSAFFSLPSIKFEFEDFEFMKPLEEEE 63
           Q+E D S L  I +H L D   F +L  F   +     S                L + +
Sbjct: 8   QQEQDQSALDLITQHLLTD---FPSLDTFASTIHHCTTS---------------TLSQRK 67

Query: 64  PPIQKPEQSERSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRKGSRVWLG 123
           PP+         ++  V     V+  +  R YRGVRRRPWGK+ AEIRDP++KG RVWLG
Sbjct: 68  PPL---------ATIAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLG 127

Query: 124 TFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGK 158
           TF++ +EAAR YD AAF++RG KA LNFPL+AGK
Sbjct: 128 TFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGK 134

[Close]
BLAST of CmaCh02G009820.1 vs. TAIR 10
Match: AT5G07580.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-30
Identity = 82/188 (43.62%), Postives = 108/188 (57.45%), Query Frame = 0 

Query: 7   DDFSRLKFIQRHRLQD---PDSFRTLLDFEFPLPSAFFSL-PSIKFEFEDFEFMKPLEEE 66
           ++ S L+ IQ H L+D    D F    DF+    S  + + P +  +  D   + P    
Sbjct: 72  EESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGLWCIEPHVPKQEPDSPVLDPDSFV 131

Query: 67  EPPIQKPEQSERSSSPEVAIAEEVLSSD-------------GGRRYRGVRRRPWGKFVAE 126
              +Q   +S  SSSPE+  +     +D               R YRGVRRRPWGKF AE
Sbjct: 132 NEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAE 191

Query: 127 IRDPSRKGSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNGR 178
           IRDP++KGSR+WLGTF SDV+AARAYD AAF++RGRKA LNFPLDAGK      P  +GR
Sbjct: 192 IRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKY---EAPANSGR 251

[Close]
BLAST of CmaCh02G009820.1 vs. TAIR 10
Match: AT5G61590.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 5.9e-28
Identity = 90/196 (45.92%), Postives = 111/196 (56.63%), Query Frame = 0 

Query: 1   MELQEEDDFSRLKFIQRHRLQD---PDSFRTLLDFEFPLPSAFFSLPSIKFEFEDFEFMK 60
           ME  EE   S L  IQ+H  +D   PD F  + DF F   +AF    S  +  E F  + 
Sbjct: 1   METFEES--SDLDVIQKHLFEDLMIPDGF--IEDFVFD-DTAFV---SGLWSLEPFNPVP 60

Query: 61  PLEEEEPP----------IQKPEQSERSSSPEVAIAEEVLSS-------DGGRRYRGVRR 120
            LE   P           +Q   +S  SSS   +   E +S+       +  R YRGVRR
Sbjct: 61  KLEPSSPVLDPDSYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRR 120

Query: 121 RPWGKFVAEIRDPSRKGSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWL 177
           RPWGKF AEIRDP++KGSR+WLGTF SD++AARAYD AAF++RGRKA LNFPLDAGK   
Sbjct: 121 RPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKY-- 180

[Close]
BLAST of CmaCh02G009820.1 vs. TAIR 10
Match: AT5G47230.1 (ethylene responsive element binding factor 5 )

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-25
Identity = 74/171 (43.27%), Postives = 101/171 (59.06%), Query Frame = 0 

Query: 29  LLDFEFPLPSAFFSLPSIKFEFE------DFEFMKPLEEEE-------------PP--IQ 88
           ++D + P    F S+P   FEF+      DF+F KP  + +             PP  I 
Sbjct: 70  IIDLDTPRSMEFLSIP---FEFDSEVSVSDFDF-KPSNQNQNQFEPELKSQIRKPPLKIS 129

Query: 89  KPEQSE------RSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRKGSRVW 148
            P ++E       ++ PEV    + +S +  + YRGVR+RPWGKF AEIRDP+++GSRVW
Sbjct: 130 LPAKTEWIQFAAENTKPEVT---KPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVW 189

Query: 149 LGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNGRNRR 173
           LGTF++ +EAARAYD AAFR+RG KA LNFPL+ GK W P    G  + +R
Sbjct: 190 LGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGK-WKPRADEGEKKRKR 232

[Close]
BLAST of CmaCh02G009820.1 vs. TAIR 10
Match: AT4G17490.1 (ethylene responsive element binding factor 6 )

HSP 1 Score: 109.0 bits (271), Expect = 4.0e-24
Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 0 

Query: 57  KPLEEEEPPIQKPEQSERSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRK 116
           KP  +  PP +       + +P+  +   V++++  R YRGVR RPWGKF AEIRDP+R+
Sbjct: 99  KPPLKIAPPNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRR 158

Query: 117 GSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNG-RNRRK 174
           G+RVWLGTF + +EAARAYD  AFR+RG KA LNFPL+  K W P    G G  N+RK
Sbjct: 159 GTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDK-WNPRAEDGRGLYNKRK 215

[Close]
BLAST of CmaCh02G009820.1 vs. TAIR 10
Match: AT5G51190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-23
Identity = 66/154 (42.86%), Postives = 86/154 (55.84%), Query Frame = 0 

Query: 4   QEEDDFSRLKFIQRHRLQDPDSFRTLLDFEFPLPSAFFSLPSIKFEFEDFEFMKPLEEEE 63
           Q+E D S L  I +H L D   F +L  F   +     S                L + +
Sbjct: 8   QQEQDQSALDLITQHLLTD---FPSLDTFASTIHHCTTS---------------TLSQRK 67

Query: 64  PPIQKPEQSERSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRKGSRVWLG 123
           PP+         ++  V     V+  +  R YRGVRRRPWGK+ AEIRDP++KG RVWLG
Sbjct: 68  PPL---------ATIAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLG 127

Query: 124 TFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGK 158
           TF++ +EAAR YD AAF++RG KA LNFPL+AGK
Sbjct: 128 TFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGK 134

The following BLAST results are available for this feature:
BLAST of CmaCh02G009820.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LY054.0e-2943.62Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9FKG28.3e-2745.92Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana OX=3702 ... [more]
O803411.7e-2443.27Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=ER... [more]
Q8VZ915.6e-2350.85Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=ER... [more]
Q8VY903.6e-2242.86Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of CmaCh02G009820.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G07580.12.8e-3043.62Integrase-type DNA-binding superfamily protein [more]
AT5G61590.15.9e-2845.92Integrase-type DNA-binding superfamily protein [more]
AT5G47230.11.2e-2543.27ethylene responsive element binding factor 5 [more]
AT4G17490.14.0e-2450.85ethylene responsive element binding factor 6 [more]
AT5G51190.12.6e-2342.86Integrase-type DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 134..154
score: 57.66
coord: 95..106
score: 72.73
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 94..158
e-value: 4.7E-37
score: 139.1
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 94..144
e-value: 1.0E-14
score: 54.5
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 94..152
score: 24.170595
IPR001471AP2/ERF domainCDDcd00018AP2coord: 102..152
e-value: 2.37277E-25
score: 90.7939
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10AP2/ERF domaincoord: 93..154
e-value: 4.5E-29
score: 102.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..177
NoneNo IPR availablePANTHERPTHR31190:SF222ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105coord: 48..157
IPR044808Ethylene-responsive transcription factorPANTHERPTHR31190DNA-BINDING DOMAINcoord: 48..157
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 94..153

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh02G009820CmaCh02G009820gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G009820.1:exon:806CmaCh02G009820.1:exon:806exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G009820.1:cdsCmaCh02G009820.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh02G009820.1CmaCh02G009820.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009873 ethylene-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity