CmaCh02G009820 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G009820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ethylene-responsive transcription factor ERF106-like
Location	Cma_Chr02: 5854617 .. 5855150 (-)
RNA-Seq Expression	CmaCh02G009820
Synteny	CmaCh02G009820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTGCAAGAAGAAGACGATTTCTCACGGTTGAAGTTCATCCAACGCCATCGTCTCCAAGATCCCGATTCCTTCCGCACTCTCCTGGATTTCGAGTTCCCGTTACCATCCGCCTTCTTCTCTCTCCCGTCGATCAAATTCGAATTCGAAGATTTCGAGTTCATGAAACCGTTGGAAGAGGAAGAGCCTCCGATTCAGAAGCCGGAACAATCGGAGCGATCGAGCTCTCCAGAAGTGGCGATCGCAGAAGAGGTGTTGAGTTCCGACGGCGGGAGGAGGTACAGAGGTGTACGACGGCGGCCGTGGGGGAAGTTCGTGGCGGAGATTCGAGATCCGAGTAGAAAAGGGAGTAGGGTTTGGTTGGGGACTTTTAATTCGGATGTTGAGGCGGCTAGGGCTTACGATTCGGCTGCGTTTAGAATGAGGGGAAGAAAGGCTAAGTTGAATTTTCCGTTGGATGCCGGGAAGTCTTGGCTGCCGCCGCCGCCGCCAGGAAATGGGCGGAACAGGAGAAAGACGAAAGTAAATTAA

mRNA sequence

ATGGAACTGCAAGAAGAAGACGATTTCTCACGGTTGAAGTTCATCCAACGCCATCGTCTCCAAGATCCCGATTCCTTCCGCACTCTCCTGGATTTCGAGTTCCCGTTACCATCCGCCTTCTTCTCTCTCCCGTCGATCAAATTCGAATTCGAAGATTTCGAGTTCATGAAACCGTTGGAAGAGGAAGAGCCTCCGATTCAGAAGCCGGAACAATCGGAGCGATCGAGCTCTCCAGAAGTGGCGATCGCAGAAGAGGTGTTGAGTTCCGACGGCGGGAGGAGGTACAGAGGTGTACGACGGCGGCCGTGGGGGAAGTTCGTGGCGGAGATTCGAGATCCGAGTAGAAAAGGGAGTAGGGTTTGGTTGGGGACTTTTAATTCGGATGTTGAGGCGGCTAGGGCTTACGATTCGGCTGCGTTTAGAATGAGGGGAAGAAAGGCTAAGTTGAATTTTCCGTTGGATGCCGGGAAGTCTTGGCTGCCGCCGCCGCCGCCAGGAAATGGGCGGAACAGGAGAAAGACGAAAGTAAATTAA

Coding sequence (CDS)

ATGGAACTGCAAGAAGAAGACGATTTCTCACGGTTGAAGTTCATCCAACGCCATCGTCTCCAAGATCCCGATTCCTTCCGCACTCTCCTGGATTTCGAGTTCCCGTTACCATCCGCCTTCTTCTCTCTCCCGTCGATCAAATTCGAATTCGAAGATTTCGAGTTCATGAAACCGTTGGAAGAGGAAGAGCCTCCGATTCAGAAGCCGGAACAATCGGAGCGATCGAGCTCTCCAGAAGTGGCGATCGCAGAAGAGGTGTTGAGTTCCGACGGCGGGAGGAGGTACAGAGGTGTACGACGGCGGCCGTGGGGGAAGTTCGTGGCGGAGATTCGAGATCCGAGTAGAAAAGGGAGTAGGGTTTGGTTGGGGACTTTTAATTCGGATGTTGAGGCGGCTAGGGCTTACGATTCGGCTGCGTTTAGAATGAGGGGAAGAAAGGCTAAGTTGAATTTTCCGTTGGATGCCGGGAAGTCTTGGCTGCCGCCGCCGCCGCCAGGAAATGGGCGGAACAGGAGAAAGACGAAAGTAAATTAA

Protein sequence

MELQEEDDFSRLKFIQRHRLQDPDSFRTLLDFEFPLPSAFFSLPSIKFEFEDFEFMKPLEEEEPPIQKPEQSERSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRKGSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNGRNRRKTKVN

Homology

[Close]

BLAST of CmaCh02G009820 vs. ExPASy Swiss-Prot
Match: Q9LY05 (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana OX=3702 GN=ERF106 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.0e-29
Identity = 82/188 (43.62%), Postives = 108/188 (57.45%), Query Frame = 0


Query: 7   DDFSRLKFIQRHRLQD---PDSFRTLLDFEFPLPSAFFSL-PSIKFEFEDFEFMKPLEEE 66
           ++ S L+ IQ H L+D    D F    DF+    S  + + P +  +  D   + P    
Sbjct: 5   EESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGLWCIEPHVPKQEPDSPVLDPDSFV 64

Query: 67  EPPIQKPEQSERSSSPEVAIAEEVLSSD-------------GGRRYRGVRRRPWGKFVAE 126
              +Q   +S  SSSPE+  +     +D               R YRGVRRRPWGKF AE
Sbjct: 65  NEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAE 124

Query: 127 IRDPSRKGSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNGR 178
           IRDP++KGSR+WLGTF SDV+AARAYD AAF++RGRKA LNFPLDAGK      P  +GR
Sbjct: 125 IRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKY---EAPANSGR 184

[Close]

BLAST of CmaCh02G009820 vs. ExPASy Swiss-Prot
Match: Q9FKG2 (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana OX=3702 GN=ERF107 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.3e-27
Identity = 90/196 (45.92%), Postives = 111/196 (56.63%), Query Frame = 0


Query: 1   MELQEEDDFSRLKFIQRHRLQD---PDSFRTLLDFEFPLPSAFFSLPSIKFEFEDFEFMK 60
           ME  EE   S L  IQ+H  +D   PD F  + DF F   +AF    S  +  E F  + 
Sbjct: 1   METFEES--SDLDVIQKHLFEDLMIPDGF--IEDFVFD-DTAFV---SGLWSLEPFNPVP 60

Query: 61  PLEEEEPP----------IQKPEQSERSSSPEVAIAEEVLSS-------DGGRRYRGVRR 120
            LE   P           +Q   +S  SSS   +   E +S+       +  R YRGVRR
Sbjct: 61  KLEPSSPVLDPDSYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRR 120

Query: 121 RPWGKFVAEIRDPSRKGSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWL 177
           RPWGKF AEIRDP++KGSR+WLGTF SD++AARAYD AAF++RGRKA LNFPLDAGK   
Sbjct: 121 RPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKY-- 180

[Close]

BLAST of CmaCh02G009820 vs. ExPASy Swiss-Prot
Match: O80341 (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=ERF5 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-24
Identity = 74/171 (43.27%), Postives = 101/171 (59.06%), Query Frame = 0


Query: 29  LLDFEFPLPSAFFSLPSIKFEFE------DFEFMKPLEEEE-------------PP--IQ 88
           ++D + P    F S+P   FEF+      DF+F KP  + +             PP  I 
Sbjct: 70  IIDLDTPRSMEFLSIP---FEFDSEVSVSDFDF-KPSNQNQNQFEPELKSQIRKPPLKIS 129

Query: 89  KPEQSE------RSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRKGSRVW 148
            P ++E       ++ PEV    + +S +  + YRGVR+RPWGKF AEIRDP+++GSRVW
Sbjct: 130 LPAKTEWIQFAAENTKPEVT---KPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVW 189

Query: 149 LGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNGRNRR 173
           LGTF++ +EAARAYD AAFR+RG KA LNFPL+ GK W P    G  + +R
Sbjct: 190 LGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGK-WKPRADEGEKKRKR 232

[Close]

BLAST of CmaCh02G009820 vs. ExPASy Swiss-Prot
Match: Q8VZ91 (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=ERF6 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-23
Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 57  KPLEEEEPPIQKPEQSERSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRK 116
           KP  +  PP +       + +P+  +   V++++  R YRGVR RPWGKF AEIRDP+R+
Sbjct: 99  KPPLKIAPPNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRR 158

Query: 117 GSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNG-RNRRK 174
           G+RVWLGTF + +EAARAYD  AFR+RG KA LNFPL+  K W P    G G  N+RK
Sbjct: 159 GTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDK-WNPRAEDGRGLYNKRK 215

[Close]

BLAST of CmaCh02G009820 vs. ExPASy Swiss-Prot
Match: Q8VY90 (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana OX=3702 GN=ERF105 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.6e-22
Identity = 66/154 (42.86%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 4   QEEDDFSRLKFIQRHRLQDPDSFRTLLDFEFPLPSAFFSLPSIKFEFEDFEFMKPLEEEE 63
           Q+E D S L  I +H L D   F +L  F   +     S                L + +
Sbjct: 8   QQEQDQSALDLITQHLLTD---FPSLDTFASTIHHCTTS---------------TLSQRK 67

Query: 64  PPIQKPEQSERSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRKGSRVWLG 123
           PP+         ++  V     V+  +  R YRGVRRRPWGK+ AEIRDP++KG RVWLG
Sbjct: 68  PPL---------ATIAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLG 127

Query: 124 TFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGK 158
           TF++ +EAAR YD AAF++RG KA LNFPL+AGK
Sbjct: 128 TFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGK 134

[Close]

BLAST of CmaCh02G009820 vs. TAIR 10
Match: AT5G07580.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-30
Identity = 82/188 (43.62%), Postives = 108/188 (57.45%), Query Frame = 0


Query: 7   DDFSRLKFIQRHRLQD---PDSFRTLLDFEFPLPSAFFSL-PSIKFEFEDFEFMKPLEEE 66
           ++ S L+ IQ H L+D    D F    DF+    S  + + P +  +  D   + P    
Sbjct: 72  EESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGLWCIEPHVPKQEPDSPVLDPDSFV 131

Query: 67  EPPIQKPEQSERSSSPEVAIAEEVLSSD-------------GGRRYRGVRRRPWGKFVAE 126
              +Q   +S  SSSPE+  +     +D               R YRGVRRRPWGKF AE
Sbjct: 132 NEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAE 191

Query: 127 IRDPSRKGSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNGR 178
           IRDP++KGSR+WLGTF SDV+AARAYD AAF++RGRKA LNFPLDAGK      P  +GR
Sbjct: 192 IRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKY---EAPANSGR 251

[Close]

BLAST of CmaCh02G009820 vs. TAIR 10
Match: AT5G61590.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 5.9e-28
Identity = 90/196 (45.92%), Postives = 111/196 (56.63%), Query Frame = 0


Query: 1   MELQEEDDFSRLKFIQRHRLQD---PDSFRTLLDFEFPLPSAFFSLPSIKFEFEDFEFMK 60
           ME  EE   S L  IQ+H  +D   PD F  + DF F   +AF    S  +  E F  + 
Sbjct: 1   METFEES--SDLDVIQKHLFEDLMIPDGF--IEDFVFD-DTAFV---SGLWSLEPFNPVP 60

Query: 61  PLEEEEPP----------IQKPEQSERSSSPEVAIAEEVLSS-------DGGRRYRGVRR 120
            LE   P           +Q   +S  SSS   +   E +S+       +  R YRGVRR
Sbjct: 61  KLEPSSPVLDPDSYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRR 120

Query: 121 RPWGKFVAEIRDPSRKGSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWL 177
           RPWGKF AEIRDP++KGSR+WLGTF SD++AARAYD AAF++RGRKA LNFPLDAGK   
Sbjct: 121 RPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKY-- 180

[Close]

BLAST of CmaCh02G009820 vs. TAIR 10
Match: AT5G47230.1 (ethylene responsive element binding factor 5 )

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-25
Identity = 74/171 (43.27%), Postives = 101/171 (59.06%), Query Frame = 0


Query: 29  LLDFEFPLPSAFFSLPSIKFEFE------DFEFMKPLEEEE-------------PP--IQ 88
           ++D + P    F S+P   FEF+      DF+F KP  + +             PP  I 
Sbjct: 70  IIDLDTPRSMEFLSIP---FEFDSEVSVSDFDF-KPSNQNQNQFEPELKSQIRKPPLKIS 129

Query: 89  KPEQSE------RSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRKGSRVW 148
            P ++E       ++ PEV    + +S +  + YRGVR+RPWGKF AEIRDP+++GSRVW
Sbjct: 130 LPAKTEWIQFAAENTKPEVT---KPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVW 189

Query: 149 LGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNGRNRR 173
           LGTF++ +EAARAYD AAFR+RG KA LNFPL+ GK W P    G  + +R
Sbjct: 190 LGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGK-WKPRADEGEKKRKR 232

[Close]

BLAST of CmaCh02G009820 vs. TAIR 10
Match: AT4G17490.1 (ethylene responsive element binding factor 6 )

HSP 1 Score: 109.0 bits (271), Expect = 4.0e-24
Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 57  KPLEEEEPPIQKPEQSERSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRK 116
           KP  +  PP +       + +P+  +   V++++  R YRGVR RPWGKF AEIRDP+R+
Sbjct: 99  KPPLKIAPPNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRR 158

Query: 117 GSRVWLGTFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGKSWLPPPPPGNG-RNRRK 174
           G+RVWLGTF + +EAARAYD  AFR+RG KA LNFPL+  K W P    G G  N+RK
Sbjct: 159 GTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDK-WNPRAEDGRGLYNKRK 215

[Close]

BLAST of CmaCh02G009820 vs. TAIR 10
Match: AT5G51190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-23
Identity = 66/154 (42.86%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 4   QEEDDFSRLKFIQRHRLQDPDSFRTLLDFEFPLPSAFFSLPSIKFEFEDFEFMKPLEEEE 63
           Q+E D S L  I +H L D   F +L  F   +     S                L + +
Sbjct: 8   QQEQDQSALDLITQHLLTD---FPSLDTFASTIHHCTTS---------------TLSQRK 67

Query: 64  PPIQKPEQSERSSSPEVAIAEEVLSSDGGRRYRGVRRRPWGKFVAEIRDPSRKGSRVWLG 123
           PP+         ++  V     V+  +  R YRGVRRRPWGK+ AEIRDP++KG RVWLG
Sbjct: 68  PPL---------ATIAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLG 127

Query: 124 TFNSDVEAARAYDSAAFRMRGRKAKLNFPLDAGK 158
           TF++ +EAAR YD AAF++RG KA LNFPL+AGK
Sbjct: 128 TFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGK 134

The following BLAST results are available for this feature:

BLAST of CmaCh02G009820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LY05	4.0e-29	43.62	Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9FKG2	8.3e-27	45.92	Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana OX=3702 ...	[more]
O80341	1.7e-24	43.27	Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]
Q8VZ91	5.6e-23	50.85	Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]
Q8VY90	3.6e-22	42.86	Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmaCh02G009820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07580.1	2.8e-30	43.62	Integrase-type DNA-binding superfamily protein	[more]
AT5G61590.1	5.9e-28	45.92	Integrase-type DNA-binding superfamily protein	[more]
AT5G47230.1	1.2e-25	43.27	ethylene responsive element binding factor 5	[more]
AT4G17490.1	4.0e-24	50.85	ethylene responsive element binding factor 6	[more]
AT5G51190.1	2.6e-23	42.86	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 134..154 score: 57.66 coord: 95..106 score: 72.73
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 94..158 e-value: 4.7E-37 score: 139.1
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 94..144 e-value: 1.0E-14 score: 54.5
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 94..152 score: 24.170595
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 102..152 e-value: 2.37277E-25 score: 90.7939
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 93..154 e-value: 4.5E-29 score: 102.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..177
None	No IPR available	PANTHER	PTHR31190:SF222	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105	coord: 48..157
IPR044808	Ethylene-responsive transcription factor	PANTHER	PTHR31190	DNA-BINDING DOMAIN	coord: 48..157
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 94..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G009820.1	CmaCh02G009820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009873	ethylene-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity