CmaCh01G018930.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G018930.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr01: 12393963 .. 12396267 (-)
Sequence length279
RNA-Seq ExpressionCmaCh01G018930.1
SyntenyCmaCh01G018930.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGGCTGAGGTGGTCCTCCACCGACTCTTCGCCTCATAGGTCCGTCCATCTCCACGGTGGTTGCCGCCCCATCCGTCGCCCGCCGAACTGTCACTGTTTGTGTATGTCACAGTGACCTAACTGGGTAGTTACAAAATCCATTCGTATGGTTTGAATATTTGAATCTAGTTCTAACTTTGACCTTATAAATTTAGTTACATGTTTTGGGCTTGGTTGCTTATACTGTTATCAACCAAATGTACAGTGTATCATCCACCTTGTTATTATTATTTTTAAATGAAGAATATTAATAATGTGACATAAATAATAGGAGAGTTTGATAAAATAATTTAAGCATATTGCACCTGTTCATCTCACGCTGTTTTTAATGCATCCACCATTATTTTATATACCTATTCTTCATTGACTGACATAATTATAAAGTTTAATACTTTTATGTCAAATTTTACTAAAATTAAATTTTCTAACTCATATTTATTTTCTATAATAAAAATTAACTTCAAAATAATACTAATTTTAAATTTTATTAAAAATACATATCTAAAATGGGAAATTATTAAAGCTGCCATGTAATTATGACGTCAAACTTTAAAAAAAGGGATTAAAAAAAGCTTAATAGGGAAATCTTTAAGGACGAAGCAGAAGTAACGCTAATTACTTTAATAATTCTCTGGACATTGTTTAATTTTTTTAAATGGATAATTACGGATCGGATAGGAATAAATGATGATAAAACCGGCCAACAGCTCTGCCAATAATAGTTTTTTTTTTTTTTTTTTCTTTTTTTAATTATTATTTTCTTTCTCATTATTATACTGTTCATTGCAGTGCGTCGCTTGCTTAGTTGTTACGGAGCTTGGGTATGCAGAATTCCAGAAGAAAAGGCACTCCATCTAGGAAACGACGTCGTTGCCATATCAGTCATCCATATTTTCTTTTTATTTTTTGGTTATTGATATTTATTAATTCTAGCTGGTTTAACGAAATTTTTGAGCTTCTATTTTAATTTTATGGCTAAATTAATAAAAGTAATAATACCTTTAAAAAATTTAAAATACTTTTTAAACTTAAAAATAATTAAAGAATACAATTGTGTCAGTTGAAAATTTTGATATTTTATTTTAAAAATATCCTTAAAACGTTTAAAAATACTTTTAAATTTTTAAAAATTTCTTAATACCTTAAAATTTTAAAAAACTAAAAAAATAAAAAGATATTTAAATCATTTAAAAAAACATGTACTTTTTAATCTTTAACAAATTCATTCTTGAATTTTATCACGTTCTAGAACCTTAATAAACATCCATTTAGTTTTTATTAGTAACAAAAACTTATCAAAACGAAATTTACATTTTTATAATGTAATATTTAAACTTTAAAAAAATCTTAAAAATACCCTTTTAATTTTACCAAAATACCCCCACCGAGGTTCGAAACCCACCGATGAGGAAGATGGCATTTTCGTAAATAGCACGATTTATCCCTCTCAATCCAGTGTCAAGACCGGTCAAACGACCCATCGCCGTGCGTGTTAATATAATAAATCTTGACTTCGTTATATATATATATAAGATAATTGCAAATTCGAATAAATTCGAGCGTTAGGGTTTTTACTTAGCGTCCGCATCCATAGAAATTCCTGGATTCCATCGTCTTAACTCTCTTCTATCAATTCTGTTCACAGGGAAGGTTCTACACAGGGGACGAGCTCGTATCGAATTTGGAAGGTTTGTTCTTTGATTTTGCTCTATGGAAAATTTTGAGATGTTGTATGCGATTCAGGTTGCTAGAATTAGGGTTTCGATTTAGTTGTTATGTGATTGAACTGGGAGAGTGAGGTTCCCGTTGTTGTCATTTTATTCTCGCCTTTTCCGTATTGTCGGCGAGTTTATACATTTTTGGTATCATTTTTGAATACGTGCGTTATTGTTTATCTTCATTCTAGTGTTAACGACATGGATATTTACGCTATTTAAGGATCGGTTTAGTACGTTTCATCGTTCAATTAGTTCTTGGATCGTCACCGAATGTTTTCTTAAGGAGAAAGAAAACTATTTGGTAAGTGGAGTTGAAATGTGATGGTGATTTTATATGGGGTTTTACCTTGATTAAGTTTGAAATAAACTTGCCCCGAGCATAGGATGTATAAAGTTTGAATCTCCATCCACACAGGTTTTTGGACTCAAATTAAAAAGATTTGAAGTTGACTTGCTCGTATTTCTGTACTCATTTACTGAACTTTTAACTGGGCAGGTTCTGGAACATATTGGCATACTGATCAGGGAAAGTACCATGTGTGA

mRNA sequence

ATGAGTTGGCTGAGGTGGTCCTCCACCGACTCTTCGCCTCATAGGTCCGTCCATCTCCACGGTGGTTGCCGCCCCATCCGTCGCCCGCCGAACTGTCACTGTTTGTTGCGTCGCTTGCTTAGTTGTTACGGAGCTTGGAAATTCCTGGATTCCATCGTCTTAACTCTCTTCTATCAATTCTGTTCACAGGGAAGGTTCTACACAGGGGACGAGCTCGTATCGAATTTGGAAGGTTCTGGAACATATTGGCATACTGATCAGGGAAAGTACCATGTGTGA

Coding sequence (CDS)

ATGAGTTGGCTGAGGTGGTCCTCCACCGACTCTTCGCCTCATAGGTCCGTCCATCTCCACGGTGGTTGCCGCCCCATCCGTCGCCCGCCGAACTGTCACTGTTTGTTGCGTCGCTTGCTTAGTTGTTACGGAGCTTGGAAATTCCTGGATTCCATCGTCTTAACTCTCTTCTATCAATTCTGTTCACAGGGAAGGTTCTACACAGGGGACGAGCTCGTATCGAATTTGGAAGGTTCTGGAACATATTGGCATACTGATCAGGGAAAGTACCATGTGTGA

Protein sequence

MSWLRWSSTDSSPHRSVHLHGGCRPIRRPPNCHCLLRRLLSCYGAWKFLDSIVLTLFYQFCSQGRFYTGDELVSNLEGSGTYWHTDQGKYHV
Homology
[Close]
BLAST of CmaCh01G018930.1 vs. NCBI nr
Match: KAG6608523.1 (hypothetical protein SDJN03_01865, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.7 bits (348), Expect = 2.6e-29
Identity = 67/92 (72.83%), Postives = 72/92 (78.26%), Query Frame = 0 

Query: 1  MSWLRWSSTDSSPHRSVHLHGGCRPIRRPPNCHCLLRRLLSCYGAWKFLDSIVLTLFYQF 60
          MSWLRWSSTDSSPHRSVHLHGGCRPIRRPPNCHCL    +   G +  L+S++  LF   
Sbjct: 1  MSWLRWSSTDSSPHRSVHLHGGCRPIRRPPNCHCLSSASIEIRG-FHHLNSLLSILF--- 60

Query: 61 CSQGRFYTGDELVSNLEGSGTYWHTDQGKYHV 93
             GR YTG ELVSNLEGSGTYWHTDQGKYHV
Sbjct: 61 --TGRCYTGYELVSNLEGSGTYWHTDQGKYHV 86

The following BLAST results are available for this feature:
BLAST of CmaCh01G018930.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G018930.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G018930.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608523.12.6e-2972.83hypothetical protein SDJN03_01865, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh01G018930.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh01G018930CmaCh01G018930gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G018930.1:exon:2073CmaCh01G018930.1:exon:2073exon
CmaCh01G018930.1:exon:2072CmaCh01G018930.1:exon:2072exon
CmaCh01G018930.1:exon:2071CmaCh01G018930.1:exon:2071exon
CmaCh01G018930.1:exon:2070CmaCh01G018930.1:exon:2070exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G018930.1:cdsCmaCh01G018930.1:cds_4CDS
CmaCh01G018930.1:cdsCmaCh01G018930.1:cds_3CDS
CmaCh01G018930.1:cdsCmaCh01G018930.1:cds_2CDS
CmaCh01G018930.1:cdsCmaCh01G018930.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh01G018930.1CmaCh01G018930.1-proteinpolypeptide