CmaCh01G017820.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G017820.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionLIM domain-containing protein WLIM1-like
LocationCma_Chr01: 11936942 .. 11938236 (-)
Sequence length918
RNA-Seq ExpressionCmaCh01G017820.1
SyntenyCmaCh01G017820.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCACATTGTCTTCTTCTTCCGCCTCCTTCCCTCGCATCACCGACTCACAATTCACTCACATTTCTCTGGCTCTGAGTTTTTCAACCACCCATTTACCCACAGCCATGGCCTTCGCAGGAACCACCCAGAAGTGCATGGCTTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCCGACAATCGTGTCTTCCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACTCTCAAGGTAATCAAACCTTGTTCATTTCAACTCTCATCTATCCATGAACTTAATTCTTAATTGGGCTGCTACATTCATTTCGATTTCTTGAAATGGGCTCTCAGATCAGCTCAATTTTAGTGGGCTATGGATGAATTTGAATTCAACGATTCACTGATTAACGGATCTGATTTGCAGTTAAGCAATTACAATTCGTTTGAAGGGGTTCTGTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACAGGAAGCTTAAACAAAAGCTTCGAAGGTATTAAGAAAAGAAACTAAGTTGGTATTCCATCACTAATCTCAAACTAACATTCTTTCTATCTTGATTTTAGGAACACCGAAGATTGGGAAGAAGCCAGCTGATTCTGAGGTGCACCTAATTAATTACTCTGTTTTACCCTGTTATTGTAAGTGATTACTGAACATCATTTGACAGAAACCAGCGGCGACCAGGGTTGCAAGCATGTTTGTCGGCACCAAAGACAAGTGCCTTGGCTGTAACAACACTGTTTATCCGACCGAGAAGGTAAATGTGAGCTGAAATGGACGAATAATTGTGGATTCAGAACATCATTTGAAGCTTTGTTTCTCAGGTTTTAGTGGATGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATCGCACACGAAGGCCGACTCTACTGCAAACATCACCACAGTCAGCTCATCAAAGAAAAAGGAGACCTGAGCCAGCTTGAGGCAAACCATTAAAGAACCACGCACTCGCAGACCCTTTTGCATATTTTCAGCTGTCTTTCTTTTTGTTCCCGTCTTTCTGCTGTGCCTTTACCTGAACTTCAGCACAACGCTCCCTTTTTGCAGAAATTGCTTTGAAATTTGCACGTCATGCTAAAAACAAAGGACGTTATCGTGTGGGTCTCTCTTGTTTTCCGCTTTGGTTGTTGAATTCAAACAAGCTAGGTAAAACTAAGGCTAAAATATACATAAACATTTACGGTTTCTTTATGGCTATATGACCCTCTTGTAATT

mRNA sequence

TTCACATTGTCTTCTTCTTCCGCCTCCTTCCCTCGCATCACCGACTCACAATTCACTCACATTTCTCTGGCTCTGAGTTTTTCAACCACCCATTTACCCACAGCCATGGCCTTCGCAGGAACCACCCAGAAGTGCATGGCTTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCCGACAATCGTGTCTTCCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACTCTCAAGTTAAGCAATTACAATTCGTTTGAAGGGGTTCTGTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACAGGAAGCTTAAACAAAAGCTTCGAAGGAACACCGAAGATTGGGAAGAAGCCAGCTGATTCTGAGAAACCAGCGGCGACCAGGGTTGCAAGCATGTTTGTCGGCACCAAAGACAAGTGCCTTGGCTGTAACAACACTGTTTATCCGACCGAGAAGGTTTTAGTGGATGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATCGCACACGAAGGCCGACTCTACTGCAAACATCACCACAGTCAGCTCATCAAAGAAAAAGGAGACCTGAGCCAGCTTGAGGCAAACCATTAAAGAACCACGCACTCGCAGACCCTTTTGCATATTTTCAGCTGTCTTTCTTTTTGTTCCCGTCTTTCTGCTGTGCCTTTACCTGAACTTCAGCACAACGCTCCCTTTTTGCAGAAATTGCTTTGAAATTTGCACGTCATGCTAAAAACAAAGGACGTTATCGTGTGGGTCTCTCTTGTTTTCCGCTTTGGTTGTTGAATTCAAACAAGCTAGGTAAAACTAAGGCTAAAATATACATAAACATTTACGGTTTCTTTATGGCTATATGACCCTCTTGTAATT

Coding sequence (CDS)

ATGGCCTTCGCAGGAACCACCCAGAAGTGCATGGCTTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCCGACAATCGTGTCTTCCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACTCTCAAGTTAAGCAATTACAATTCGTTTGAAGGGGTTCTGTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACAGGAAGCTTAAACAAAAGCTTCGAAGGAACACCGAAGATTGGGAAGAAGCCAGCTGATTCTGAGAAACCAGCGGCGACCAGGGTTGCAAGCATGTTTGTCGGCACCAAAGACAAGTGCCTTGGCTGTAACAACACTGTTTATCCGACCGAGAAGGTTTTAGTGGATGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATCGCACACGAAGGCCGACTCTACTGCAAACATCACCACAGTCAGCTCATCAAAGAAAAAGGAGACCTGAGCCAGCTTGAGGCAAACCATTAA

Protein sequence

MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH
Homology
[Close]
BLAST of CmaCh01G017820.1 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.2e-88
Identity = 148/176 (84.09%), Postives = 162/176 (92.05%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQ FKRTGSL KSFEGTPKIGK  +P + E+PA T+V++MF GT++KC+GC+ TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLE 175
           EKV V+GT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHH QLIKEKG+LSQLE
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]
BLAST of CmaCh01G017820.1 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.9e-74
Identity = 123/174 (70.69%), Postives = 143/174 (82.18%), Query Frame = 0 

Query: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
           +F GTTQKC  C+KTVYLVDKL A+ RV+HKACFRCHHC  TLKLSN+NSF+GV+YCR H
Sbjct: 3   SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62

Query: 62  FDQLFKRTGSLNKSFEGTPKI-GKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 121
           FDQLFKRTGSL KSF+GTPK   ++    E  +A R++S F GT+DKC  C   VYP E+
Sbjct: 63  FDQLFKRTGSLEKSFDGTPKFKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIER 122

Query: 122 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLE 175
           V VDGT+YH++CFKCCHGGCTISPSNYIAHEGRLYCKHHH QL K+KG+ SQLE
Sbjct: 123 VKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLE 176

[Close]
BLAST of CmaCh01G017820.1 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.8e-59
Identity = 104/174 (59.77%), Postives = 125/174 (71.84%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPK-IGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTE 120
           HF+QLFK +GS +K+F+   K +  KP        +R+A MF GT+DKC  C  TVYP E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL 174
           KV V+   YHKSCFKC HGGC ISPSNY A EG LYCKHH +QL KEKG  + L
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]
BLAST of CmaCh01G017820.1 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-58
Identity = 101/173 (58.38%), Postives = 124/173 (71.68%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HF+QLFK +GS NK+F+   K   K         +RVA  F GT++KC  C+ TVYP EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL 174
           V V+  +YHKSCFKC HGGC ISPSNY A EG LYCKHH +QL KEKG  + L
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]
BLAST of CmaCh01G017820.1 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.0e-53
Identity = 91/183 (49.73%), Postives = 129/183 (70.49%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC  CDKTVY+VD L+ +   +HK+CFRC HCKGTL++SNY+S +GVLYC+ 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATR----VASMFVGTKDKCLGCNNTVY 120
           HF+QLFK +G+ +K+F+        P  +EKP  TR    ++S+F GT+DKC  C  TVY
Sbjct: 61  HFEQLFKESGNFSKNFQ--------PGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVY 120

Query: 121 PTEKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL--E 178
           P EK+ ++G  +HK+CF+C HGGCT++ S+Y + +  LYC+HH +QL  EKG+ + +   
Sbjct: 121 PLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQA 175

[Close]
BLAST of CmaCh01G017820.1 vs. ExPASy TrEMBL
Match: A0A6J1J2W3 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111481309 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.5e-103
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH
Sbjct: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 177

[Close]
BLAST of CmaCh01G017820.1 vs. ExPASy TrEMBL
Match: A0A6J1FJ62 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111445852 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 2.8e-102
Identity = 175/177 (98.87%), Postives = 176/177 (99.44%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSL KSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKGDLSQLEANH
Sbjct: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGDLSQLEANH 177

[Close]
BLAST of CmaCh01G017820.1 vs. ExPASy TrEMBL
Match: A0A6J1FCP1 (LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC111442805 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 1.9e-95
Identity = 164/179 (91.62%), Postives = 172/179 (96.09%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL+KSFEGTPKIGK  KPADSE+P AT+VASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           EKV V+GT YHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKG+LSQLE +H
Sbjct: 121 EKVSVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]
BLAST of CmaCh01G017820.1 vs. ExPASy TrEMBL
Match: A0A0A0L3T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.5e-95
Identity = 164/179 (91.62%), Postives = 171/179 (95.53%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL+KSFEGTPKIGK  KP DSEKP AT+VASMFVGTKDKCLGCN TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           EKV V+GTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKG+LSQLE +H
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]
BLAST of CmaCh01G017820.1 vs. ExPASy TrEMBL
Match: A0A5A7VG01 (LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001620 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.3e-95
Identity = 163/179 (91.06%), Postives = 171/179 (95.53%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL+KSFEGTPKIGK  KP DSEKP AT+VASMF+GTKDKCLGCN TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           EKV V+GTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKG+LSQLE +H
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]
BLAST of CmaCh01G017820.1 vs. NCBI nr
Match: XP_022982515.1 (LIM domain-containing protein WLIM1-like [Cucurbita maxima])

HSP 1 Score: 385.2 bits (988), Expect = 3.1e-103
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH
Sbjct: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 177

[Close]
BLAST of CmaCh01G017820.1 vs. NCBI nr
Match: XP_022940134.1 (LIM domain-containing protein WLIM1-like [Cucurbita moschata] >XP_023524403.1 LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo] >KAG6608422.1 LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 380.9 bits (977), Expect = 5.8e-102
Identity = 175/177 (98.87%), Postives = 176/177 (99.44%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSL KSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKGDLSQLEANH
Sbjct: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGDLSQLEANH 177

[Close]
BLAST of CmaCh01G017820.1 vs. NCBI nr
Match: KAG6591426.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360.1 bits (923), Expect = 1.1e-95
Identity = 165/179 (92.18%), Postives = 173/179 (96.65%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL+KSFEGTPKIGK  KPADSE+P AT+VASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           EKV V+GTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKG+LSQLE +H
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]
BLAST of CmaCh01G017820.1 vs. NCBI nr
Match: XP_023536448.1 (LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.1 bits (923), Expect = 1.1e-95
Identity = 165/179 (92.18%), Postives = 173/179 (96.65%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 48  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 107

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL+KSFEGTPKIGK  KPADSE+P AT+VASMFVGTKDKCLGC NTVYPT
Sbjct: 108 HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 167

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           EKV V+GTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKG+LSQLE +H
Sbjct: 168 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 226

[Close]
BLAST of CmaCh01G017820.1 vs. NCBI nr
Match: XP_038900157.1 (LIM domain-containing protein WLIM1 [Benincasa hispida])

HSP 1 Score: 359.8 bits (922), Expect = 1.4e-95
Identity = 165/179 (92.18%), Postives = 173/179 (96.65%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL+KSFEGTPKIGK  KPADSEKPAAT++ASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKLASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           EKV V+GTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKG+LSQLE +H
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]
BLAST of CmaCh01G017820.1 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 326.2 bits (835), Expect = 1.6e-89
Identity = 148/176 (84.09%), Postives = 162/176 (92.05%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQ FKRTGSL KSFEGTPKIGK  +P + E+PA T+V++MF GT++KC+GC+ TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLE 175
           EKV V+GT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHH QLIKEKG+LSQLE
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]
BLAST of CmaCh01G017820.1 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 228.8 bits (582), Expect = 3.4e-60
Identity = 104/174 (59.77%), Postives = 125/174 (71.84%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPK-IGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTE 120
           HF+QLFK +GS +K+F+   K +  KP        +R+A MF GT+DKC  C  TVYP E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL 174
           KV V+   YHKSCFKC HGGC ISPSNY A EG LYCKHH +QL KEKG  + L
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]
BLAST of CmaCh01G017820.1 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-59
Identity = 101/173 (58.38%), Postives = 124/173 (71.68%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HF+QLFK +GS NK+F+   K   K         +RVA  F GT++KC  C+ TVYP EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL 174
           V V+  +YHKSCFKC HGGC ISPSNY A EG LYCKHH +QL KEKG  + L
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]
BLAST of CmaCh01G017820.1 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-59
Identity = 101/173 (58.38%), Postives = 124/173 (71.68%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HF+QLFK +GS NK+F+   K   K         +RVA  F GT++KC  C+ TVYP EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL 174
           V V+  +YHKSCFKC HGGC ISPSNY A EG LYCKHH +QL KEKG  + L
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]
BLAST of CmaCh01G017820.1 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-59
Identity = 101/173 (58.38%), Postives = 124/173 (71.68%), Query Frame = 0 

Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HF+QLFK +GS NK+F+   K   K         +RVA  F GT++KC  C+ TVYP EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL 174
           V V+  +YHKSCFKC HGGC ISPSNY A EG LYCKHH +QL KEKG  + L
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

The following BLAST results are available for this feature:
BLAST of CmaCh01G017820.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94JX52.2e-8884.09LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=... [more]
P296756.9e-7470.69Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1[more]
O041934.8e-5959.77LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P... [more]
Q9M0472.4e-5858.38LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P... [more]
Q1ECF53.0e-5349.73LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P... [more]
BLAST of CmaCh01G017820.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J2W31.5e-103100.00LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1FJ622.8e-10298.87LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1FCP11.9e-9591.62LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC11144280... [more]
A0A0A0L3T92.5e-9591.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1[more]
A0A5A7VG013.3e-9591.06LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
BLAST of CmaCh01G017820.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022982515.13.1e-103100.00LIM domain-containing protein WLIM1-like [Cucurbita maxima][more]
XP_022940134.15.8e-10298.87LIM domain-containing protein WLIM1-like [Cucurbita moschata] >XP_023524403.1 LI... [more]
KAG6591426.11.1e-9592.18LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_023536448.11.1e-9592.18LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo][more]
XP_038900157.11.4e-9592.18LIM domain-containing protein WLIM1 [Benincasa hispida][more]
BLAST of CmaCh01G017820.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G10200.11.6e-8984.09GATA type zinc finger transcription factor family protein [more]
AT2G39900.13.4e-6059.77GATA type zinc finger transcription factor family protein [more]
AT3G55770.11.7e-5958.38GATA type zinc finger transcription factor family protein [more]
AT3G55770.21.7e-5958.38GATA type zinc finger transcription factor family protein [more]
AT3G55770.31.7e-5958.38GATA type zinc finger transcription factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 9..61
e-value: 8.1E-11
score: 51.9
coord: 107..159
e-value: 2.4E-12
score: 57.0
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 108..162
e-value: 1.8E-11
score: 44.1
coord: 10..64
e-value: 3.4E-10
score: 40.0
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 10..44
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 106..166
score: 12.4642
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 8..68
score: 13.0879
NoneNo IPR availableGENE3D2.10.110.10Cysteine Rich Proteincoord: 102..172
e-value: 9.3E-19
score: 69.4
coord: 4..74
e-value: 1.9E-19
score: 71.6
NoneNo IPR availablePANTHERPTHR24206OS06G0237300 PROTEINcoord: 1..177
NoneNo IPR availablePANTHERPTHR24206:SF92GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEINcoord: 1..177
NoneNo IPR availableCDDcd09441LIM2_SF3coord: 108..168
e-value: 6.80979E-37
score: 120.268
NoneNo IPR availableCDDcd09440LIM1_SF3coord: 6..68
e-value: 2.50489E-39
score: 126.425
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 134..172
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 3..35
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 100..133
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 36..76

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh01G017820CmaCh01G017820gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G017820.1:exon:1740CmaCh01G017820.1:exon:1740exon
CmaCh01G017820.1:exon:1739CmaCh01G017820.1:exon:1739exon
CmaCh01G017820.1:exon:1738CmaCh01G017820.1:exon:1738exon
CmaCh01G017820.1:exon:1737CmaCh01G017820.1:exon:1737exon
CmaCh01G017820.1:exon:1736CmaCh01G017820.1:exon:1736exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G017820.1:three_prime_utrCmaCh01G017820.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G017820.1:cdsCmaCh01G017820.1:cds_5CDS
CmaCh01G017820.1:cdsCmaCh01G017820.1:cds_4CDS
CmaCh01G017820.1:cdsCmaCh01G017820.1:cds_3CDS
CmaCh01G017820.1:cdsCmaCh01G017820.1:cds_2CDS
CmaCh01G017820.1:cdsCmaCh01G017820.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G017820.1:five_prime_utrCmaCh01G017820.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh01G017820.1CmaCh01G017820.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051017 actin filament bundle assembly
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005886 plasma membrane
molecular_function GO:0051015 actin filament binding
molecular_function GO:0046872 metal ion binding