CmaCh01G017820 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G017820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	LIM domain-containing protein WLIM1-like
Location	Cma_Chr01: 11936942 .. 11938236 (-)
RNA-Seq Expression	CmaCh01G017820
Synteny	CmaCh01G017820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCACATTGTCTTCTTCTTCCGCCTCCTTCCCTCGCATCACCGACTCACAATTCACTCACATTTCTCTGGCTCTGAGTTTTTCAACCACCCATTTACCCACAGCCATGGCCTTCGCAGGAACCACCCAGAAGTGCATGGCTTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCCGACAATCGTGTCTTCCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACTCTCAAGGTAATCAAACCTTGTTCATTTCAACTCTCATCTATCCATGAACTTAATTCTTAATTGGGCTGCTACATTCATTTCGATTTCTTGAAATGGGCTCTCAGATCAGCTCAATTTTAGTGGGCTATGGATGAATTTGAATTCAACGATTCACTGATTAACGGATCTGATTTGCAGTTAAGCAATTACAATTCGTTTGAAGGGGTTCTGTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACAGGAAGCTTAAACAAAAGCTTCGAAGGTATTAAGAAAAGAAACTAAGTTGGTATTCCATCACTAATCTCAAACTAACATTCTTTCTATCTTGATTTTAGGAACACCGAAGATTGGGAAGAAGCCAGCTGATTCTGAGGTGCACCTAATTAATTACTCTGTTTTACCCTGTTATTGTAAGTGATTACTGAACATCATTTGACAGAAACCAGCGGCGACCAGGGTTGCAAGCATGTTTGTCGGCACCAAAGACAAGTGCCTTGGCTGTAACAACACTGTTTATCCGACCGAGAAGGTAAATGTGAGCTGAAATGGACGAATAATTGTGGATTCAGAACATCATTTGAAGCTTTGTTTCTCAGGTTTTAGTGGATGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATCGCACACGAAGGCCGACTCTACTGCAAACATCACCACAGTCAGCTCATCAAAGAAAAAGGAGACCTGAGCCAGCTTGAGGCAAACCATTAAAGAACCACGCACTCGCAGACCCTTTTGCATATTTTCAGCTGTCTTTCTTTTTGTTCCCGTCTTTCTGCTGTGCCTTTACCTGAACTTCAGCACAACGCTCCCTTTTTGCAGAAATTGCTTTGAAATTTGCACGTCATGCTAAAAACAAAGGACGTTATCGTGTGGGTCTCTCTTGTTTTCCGCTTTGGTTGTTGAATTCAAACAAGCTAGGTAAAACTAAGGCTAAAATATACATAAACATTTACGGTTTCTTTATGGCTATATGACCCTCTTGTAATT

mRNA sequence

TTCACATTGTCTTCTTCTTCCGCCTCCTTCCCTCGCATCACCGACTCACAATTCACTCACATTTCTCTGGCTCTGAGTTTTTCAACCACCCATTTACCCACAGCCATGGCCTTCGCAGGAACCACCCAGAAGTGCATGGCTTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCCGACAATCGTGTCTTCCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACTCTCAAGTTAAGCAATTACAATTCGTTTGAAGGGGTTCTGTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACAGGAAGCTTAAACAAAAGCTTCGAAGGAACACCGAAGATTGGGAAGAAGCCAGCTGATTCTGAGAAACCAGCGGCGACCAGGGTTGCAAGCATGTTTGTCGGCACCAAAGACAAGTGCCTTGGCTGTAACAACACTGTTTATCCGACCGAGAAGGTTTTAGTGGATGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATCGCACACGAAGGCCGACTCTACTGCAAACATCACCACAGTCAGCTCATCAAAGAAAAAGGAGACCTGAGCCAGCTTGAGGCAAACCATTAAAGAACCACGCACTCGCAGACCCTTTTGCATATTTTCAGCTGTCTTTCTTTTTGTTCCCGTCTTTCTGCTGTGCCTTTACCTGAACTTCAGCACAACGCTCCCTTTTTGCAGAAATTGCTTTGAAATTTGCACGTCATGCTAAAAACAAAGGACGTTATCGTGTGGGTCTCTCTTGTTTTCCGCTTTGGTTGTTGAATTCAAACAAGCTAGGTAAAACTAAGGCTAAAATATACATAAACATTTACGGTTTCTTTATGGCTATATGACCCTCTTGTAATT

Coding sequence (CDS)

ATGGCCTTCGCAGGAACCACCCAGAAGTGCATGGCTTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCCGACAATCGTGTCTTCCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACTCTCAAGTTAAGCAATTACAATTCGTTTGAAGGGGTTCTGTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACAGGAAGCTTAAACAAAAGCTTCGAAGGAACACCGAAGATTGGGAAGAAGCCAGCTGATTCTGAGAAACCAGCGGCGACCAGGGTTGCAAGCATGTTTGTCGGCACCAAAGACAAGTGCCTTGGCTGTAACAACACTGTTTATCCGACCGAGAAGGTTTTAGTGGATGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATCGCACACGAAGGCCGACTCTACTGCAAACATCACCACAGTCAGCTCATCAAAGAAAAAGGAGACCTGAGCCAGCTTGAGGCAAACCATTAA

Protein sequence

MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH

Homology

[Close]

BLAST of CmaCh01G017820 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.2e-88
Identity = 148/176 (84.09%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQ FKRTGSL KSFEGTPKIGK  +P + E+PA T+V++MF GT++KC+GC+ TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLE 175
           EKV V+GT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHH QLIKEKG+LSQLE
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]

BLAST of CmaCh01G017820 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.9e-74
Identity = 123/174 (70.69%), Postives = 143/174 (82.18%), Query Frame = 0


Query: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
           +F GTTQKC  C+KTVYLVDKL A+ RV+HKACFRCHHC  TLKLSN+NSF+GV+YCR H
Sbjct: 3   SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62

Query: 62  FDQLFKRTGSLNKSFEGTPKI-GKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 121
           FDQLFKRTGSL KSF+GTPK   ++    E  +A R++S F GT+DKC  C   VYP E+
Sbjct: 63  FDQLFKRTGSLEKSFDGTPKFKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIER 122

Query: 122 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLE 175
           V VDGT+YH++CFKCCHGGCTISPSNYIAHEGRLYCKHHH QL K+KG+ SQLE
Sbjct: 123 VKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLE 176

[Close]

BLAST of CmaCh01G017820 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.8e-59
Identity = 104/174 (59.77%), Postives = 125/174 (71.84%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPK-IGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTE 120
           HF+QLFK +GS +K+F+   K +  KP        +R+A MF GT+DKC  C  TVYP E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL 174
           KV V+   YHKSCFKC HGGC ISPSNY A EG LYCKHH +QL KEKG  + L
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of CmaCh01G017820 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-58
Identity = 101/173 (58.38%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HF+QLFK +GS NK+F+   K   K         +RVA  F GT++KC  C+ TVYP EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL 174
           V V+  +YHKSCFKC HGGC ISPSNY A EG LYCKHH +QL KEKG  + L
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of CmaCh01G017820 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.0e-53
Identity = 91/183 (49.73%), Postives = 129/183 (70.49%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC  CDKTVY+VD L+ +   +HK+CFRC HCKGTL++SNY+S +GVLYC+ 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATR----VASMFVGTKDKCLGCNNTVY 120
           HF+QLFK +G+ +K+F+        P  +EKP  TR    ++S+F GT+DKC  C  TVY
Sbjct: 61  HFEQLFKESGNFSKNFQ--------PGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVY 120

Query: 121 PTEKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL--E 178
           P EK+ ++G  +HK+CF+C HGGCT++ S+Y + +  LYC+HH +QL  EKG+ + +   
Sbjct: 121 PLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQA 175

[Close]

BLAST of CmaCh01G017820 vs. ExPASy TrEMBL
Match: A0A6J1J2W3 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111481309 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.5e-103
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH
Sbjct: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 177

[Close]

BLAST of CmaCh01G017820 vs. ExPASy TrEMBL
Match: A0A6J1FJ62 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111445852 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 2.8e-102
Identity = 175/177 (98.87%), Postives = 176/177 (99.44%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSL KSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKGDLSQLEANH
Sbjct: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGDLSQLEANH 177

[Close]

BLAST of CmaCh01G017820 vs. ExPASy TrEMBL
Match: A0A6J1FCP1 (LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC111442805 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 1.9e-95
Identity = 164/179 (91.62%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL+KSFEGTPKIGK  KPADSE+P AT+VASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           EKV V+GT YHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKG+LSQLE +H
Sbjct: 121 EKVSVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CmaCh01G017820 vs. ExPASy TrEMBL
Match: A0A0A0L3T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.5e-95
Identity = 164/179 (91.62%), Postives = 171/179 (95.53%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL+KSFEGTPKIGK  KP DSEKP AT+VASMFVGTKDKCLGCN TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           EKV V+GTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKG+LSQLE +H
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CmaCh01G017820 vs. ExPASy TrEMBL
Match: A0A5A7VG01 (LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001620 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.3e-95
Identity = 163/179 (91.06%), Postives = 171/179 (95.53%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL+KSFEGTPKIGK  KP DSEKP AT+VASMF+GTKDKCLGCN TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           EKV V+GTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKG+LSQLE +H
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CmaCh01G017820 vs. NCBI nr
Match: XP_022982515.1 (LIM domain-containing protein WLIM1-like [Cucurbita maxima])

HSP 1 Score: 385.2 bits (988), Expect = 3.1e-103
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH
Sbjct: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 177

[Close]

BLAST of CmaCh01G017820 vs. NCBI nr
Match: XP_022940134.1 (LIM domain-containing protein WLIM1-like [Cucurbita moschata] >XP_023524403.1 LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo] >KAG6608422.1 LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 380.9 bits (977), Expect = 5.8e-102
Identity = 175/177 (98.87%), Postives = 176/177 (99.44%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSL KSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKGDLSQLEANH
Sbjct: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGDLSQLEANH 177

[Close]

BLAST of CmaCh01G017820 vs. NCBI nr
Match: KAG6591426.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360.1 bits (923), Expect = 1.1e-95
Identity = 165/179 (92.18%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL+KSFEGTPKIGK  KPADSE+P AT+VASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           EKV V+GTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKG+LSQLE +H
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CmaCh01G017820 vs. NCBI nr
Match: XP_023536448.1 (LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.1 bits (923), Expect = 1.1e-95
Identity = 165/179 (92.18%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 48  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 107

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL+KSFEGTPKIGK  KPADSE+P AT+VASMFVGTKDKCLGC NTVYPT
Sbjct: 108 HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 167

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           EKV V+GTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKG+LSQLE +H
Sbjct: 168 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 226

[Close]

BLAST of CmaCh01G017820 vs. NCBI nr
Match: XP_038900157.1 (LIM domain-containing protein WLIM1 [Benincasa hispida])

HSP 1 Score: 359.8 bits (922), Expect = 1.4e-95
Identity = 165/179 (92.18%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL+KSFEGTPKIGK  KPADSEKPAAT++ASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKLASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLEANH 178
           EKV V+GTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHH+QLIKEKG+LSQLE +H
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of CmaCh01G017820 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 326.2 bits (835), Expect = 1.6e-89
Identity = 148/176 (84.09%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQ FKRTGSL KSFEGTPKIGK  +P + E+PA T+V++MF GT++KC+GC+ TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQLE 175
           EKV V+GT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHH QLIKEKG+LSQLE
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]

BLAST of CmaCh01G017820 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 228.8 bits (582), Expect = 3.4e-60
Identity = 104/174 (59.77%), Postives = 125/174 (71.84%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPK-IGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTE 120
           HF+QLFK +GS +K+F+   K +  KP        +R+A MF GT+DKC  C  TVYP E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL 174
           KV V+   YHKSCFKC HGGC ISPSNY A EG LYCKHH +QL KEKG  + L
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of CmaCh01G017820 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-59
Identity = 101/173 (58.38%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HF+QLFK +GS NK+F+   K   K         +RVA  F GT++KC  C+ TVYP EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL 174
           V V+  +YHKSCFKC HGGC ISPSNY A EG LYCKHH +QL KEKG  + L
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of CmaCh01G017820 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-59
Identity = 101/173 (58.38%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HF+QLFK +GS NK+F+   K   K         +RVA  F GT++KC  C+ TVYP EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL 174
           V V+  +YHKSCFKC HGGC ISPSNY A EG LYCKHH +QL KEKG  + L
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of CmaCh01G017820 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-59
Identity = 101/173 (58.38%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HF+QLFK +GS NK+F+   K   K         +RVA  F GT++KC  C+ TVYP EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VLVDGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHSQLIKEKGDLSQL 174
           V V+  +YHKSCFKC HGGC ISPSNY A EG LYCKHH +QL KEKG  + L
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

The following BLAST results are available for this feature:

BLAST of CmaCh01G017820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	2.2e-88	84.09	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	6.9e-74	70.69	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	4.8e-59	59.77	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	2.4e-58	58.38	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
Q1ECF5	3.0e-53	49.73	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]

BLAST of CmaCh01G017820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J2W3	1.5e-103	100.00	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FJ62	2.8e-102	98.87	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1FCP1	1.9e-95	91.62	LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC11144280...	[more]
A0A0A0L3T9	2.5e-95	91.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1	[more]
A0A5A7VG01	3.3e-95	91.06	LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of CmaCh01G017820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982515.1	3.1e-103	100.00	LIM domain-containing protein WLIM1-like [Cucurbita maxima]	[more]
XP_022940134.1	5.8e-102	98.87	LIM domain-containing protein WLIM1-like [Cucurbita moschata] >XP_023524403.1 LI...	[more]
KAG6591426.1	1.1e-95	92.18	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_023536448.1	1.1e-95	92.18	LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038900157.1	1.4e-95	92.18	LIM domain-containing protein WLIM1 [Benincasa hispida]	[more]

BLAST of CmaCh01G017820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	1.6e-89	84.09	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	3.4e-60	59.77	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	1.7e-59	58.38	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	1.7e-59	58.38	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	1.7e-59	58.38	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 9..61 e-value: 8.1E-11 score: 51.9 coord: 107..159 e-value: 2.4E-12 score: 57.0
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 108..162 e-value: 1.8E-11 score: 44.1 coord: 10..64 e-value: 3.4E-10 score: 40.0
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 106..166 score: 12.4642
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.0879
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 102..172 e-value: 9.3E-19 score: 69.4 coord: 4..74 e-value: 1.9E-19 score: 71.6
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..177
None	No IPR available	PANTHER	PTHR24206:SF92	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 1..177
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 108..168 e-value: 6.80979E-37 score: 120.268
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 2.50489E-39 score: 126.425
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 134..172
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 100..133
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G017820.1	CmaCh01G017820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding