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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGATTCTAACCATAGGAGTTGCATTTCTAGTGAGTTTTATTGGATTGATTTATGTAGCATTTTTGAAGCCTCCATCTTCGAAAATATGTGGATCACCGAATGGCCCTCGAGTGTCTTCACCTCGAATAAAACTCAACGATGGAAGACACTTGGCCTACAAAGAATTTGGAGTTTCCAAGGAAAAGGCTCAATACAAAGTCATTGTTTGTCATGGCCTTCGTAGCTGCAAAGATATGGATTTGCCGATCTCTCAAGTGCCACATTATCGCTCATCTTTTACTCATAAATCTCTTTATTTTTGTTTATTTTTGTATACATGGCTAAAATGTATATGTTTTTAATTTTAGGAACTCATGGAGGAGCTTAAGTTGTACTTAGTAATCTACGATAGAGCGGGTCATTGTGAGAGTGACCCATATCCATCACGCTCAATAAAGATTGATACCCTCGACATTCAAGAATTAGCTGACAAGTTGGAACTCGGCAAAAAATTTTATGTAATTGGATTTTCGGCAGGAACATACCCTGTTTGGGGTTGTGTGAAATACATTCCGCATAGGTAAATTTAATTTTTGAATTTTGAAAGTTGTATTGAGTTAGTCTTTTGGTAAAAATATGTTTATAAAGTTTTTATTTGCAGACTTCTAGGAGCTGCTCTAGTTGTTCCACCCGTGAATTTTTGGTGGCCTTCTTTTCCTTCTGCTTTATCACAACGTTTATTTACGAAGCTTCCTCAATCTTATAAACGTACATATTGGATTGCATATTACACACCTTGGTTGATGTATTGGTGGATGACACAGAAATGGTTTGAAAACTTTAATATTAGAAGAATGCTGTGTGATTCTGATTTAGCCATAATAAAGAGAATTGAGGAACACCCAAAAGAGGTACTTCTCTCTAATTGATACACACTTTTAAGTTGCACATATCTTTAATCCTTCCCTAAAATTAATTTGCATTTTGTCAAATTTTTAGTAATATTTTTGTTTTTCAACTAGAATCGATGCAACCCGATCCAACAAGGAGAATATGAATGCAACATAAGAGACTTATTGTGTAATTTTGGGAAATGGGAGTTTGATCCCATGGAGTTGAGCAATCCATTTCATGATAATGAAGGCAGTTTTCATATGTGGCAAGGTTGTGAAGACTATGTAGTTCCTATGGAATTGAATCGTTTTATAGCTCAAAAGCTTCCATGGATTCAATATCATGAGCTTCCTGATAATGGGCATCTATTAGTTCATGAAGCTCATAACTTAGAAGTCATACTAAGGGCACTTCTCGGTTAA mRNA sequence ATGATTCTAACCATAGGAGTTGCATTTCTAGTGAGTTTTATTGGATTGATTTATGTAGCATTTTTGAAGCCTCCATCTTCGAAAATATGTGGATCACCGAATGGCCCTCGAGTGTCTTCACCTCGAATAAAACTCAACGATGGAAGACACTTGGCCTACAAAGAATTTGGAGTTTCCAAGGAAAAGGCTCAATACAAAGTCATTGTTTGTCATGGCCTTCGTAGCTGCAAAGATATGGATTTGCCGATCTCTCAAGAACTCATGGAGGAGCTTAAGTTGTACTTAGTAATCTACGATAGAGCGGGTCATTGTGAGAGTGACCCATATCCATCACGCTCAATAAAGATTGATACCCTCGACATTCAAGAATTAGCTGACAAGTTGGAACTCGGCAAAAAATTTTATGTAATTGGATTTTCGGCAGGAACATACCCTGTTTGGGGTTGTGTGAAATACATTCCGCATAGACTTCTAGGAGCTGCTCTAGTTGTTCCACCCGTGAATTTTTGGTGGCCTTCTTTTCCTTCTGCTTTATCACAACGTTTATTTACGAAGCTTCCTCAATCTTATAAACGTACATATTGGATTGCATATTACACACCTTGGTTGATGTATTGGTGGATGACACAGAAATGGTTTGAAAACTTTAATATTAGAAGAATGCTGTGTGATTCTGATTTAGCCATAATAAAGAGAATTGAGGAACACCCAAAAGAGAATCGATGCAACCCGATCCAACAAGGAGAATATGAATGCAACATAAGAGACTTATTGTGTAATTTTGGGAAATGGGAGTTTGATCCCATGGAGTTGAGCAATCCATTTCATGATAATGAAGGCAGTTTTCATATGTGGCAAGGTTGTGAAGACTATGTAGTTCCTATGGAATTGAATCGTTTTATAGCTCAAAAGCTTCCATGGATTCAATATCATGAGCTTCCTGATAATGGGCATCTATTAGTTCATGAAGCTCATAACTTAGAAGTCATACTAAGGGCACTTCTCGGTTAA Coding sequence (CDS) ATGATTCTAACCATAGGAGTTGCATTTCTAGTGAGTTTTATTGGATTGATTTATGTAGCATTTTTGAAGCCTCCATCTTCGAAAATATGTGGATCACCGAATGGCCCTCGAGTGTCTTCACCTCGAATAAAACTCAACGATGGAAGACACTTGGCCTACAAAGAATTTGGAGTTTCCAAGGAAAAGGCTCAATACAAAGTCATTGTTTGTCATGGCCTTCGTAGCTGCAAAGATATGGATTTGCCGATCTCTCAAGAACTCATGGAGGAGCTTAAGTTGTACTTAGTAATCTACGATAGAGCGGGTCATTGTGAGAGTGACCCATATCCATCACGCTCAATAAAGATTGATACCCTCGACATTCAAGAATTAGCTGACAAGTTGGAACTCGGCAAAAAATTTTATGTAATTGGATTTTCGGCAGGAACATACCCTGTTTGGGGTTGTGTGAAATACATTCCGCATAGACTTCTAGGAGCTGCTCTAGTTGTTCCACCCGTGAATTTTTGGTGGCCTTCTTTTCCTTCTGCTTTATCACAACGTTTATTTACGAAGCTTCCTCAATCTTATAAACGTACATATTGGATTGCATATTACACACCTTGGTTGATGTATTGGTGGATGACACAGAAATGGTTTGAAAACTTTAATATTAGAAGAATGCTGTGTGATTCTGATTTAGCCATAATAAAGAGAATTGAGGAACACCCAAAAGAGAATCGATGCAACCCGATCCAACAAGGAGAATATGAATGCAACATAAGAGACTTATTGTGTAATTTTGGGAAATGGGAGTTTGATCCCATGGAGTTGAGCAATCCATTTCATGATAATGAAGGCAGTTTTCATATGTGGCAAGGTTGTGAAGACTATGTAGTTCCTATGGAATTGAATCGTTTTATAGCTCAAAAGCTTCCATGGATTCAATATCATGAGCTTCCTGATAATGGGCATCTATTAGTTCATGAAGCTCATAACTTAGAAGTCATACTAAGGGCACTTCTCGGTTAA Protein sequence MILTIGVAFLVSFIGLIYVAFLKPPSSKICGSPNGPRVSSPRIKLNDGRHLAYKEFGVSKEKAQYKVIVCHGLRSCKDMDLPISQELMEELKLYLVIYDRAGHCESDPYPSRSIKIDTLDIQELADKLELGKKFYVIGFSAGTYPVWGCVKYIPHRLLGAALVVPPVNFWWPSFPSALSQRLFTKLPQSYKRTYWIAYYTPWLMYWWMTQKWFENFNIRRMLCDSDLAIIKRIEEHPKENRCNPIQQGEYECNIRDLLCNFGKWEFDPMELSNPFHDNEGSFHMWQGCEDYVVPMELNRFIAQKLPWIQYHELPDNGHLLVHEAHNLEVILRALLG
Homology
BLAST of CmaCh01G008490.1 vs. TAIR 10
Match: AT5G22460.1 (alpha/beta-Hydrolases superfamily protein ) HSP 1 Score: 376.7 bits (966), Expect = 1.9e-104 Identity = 175/339 (51.62%), Postives = 238/339 (70.21%), Query Frame = 0
Query: 1 MILTIGVAFLVSFIGLIYVAFLKPPSSKICGSPNGPRVSSPRIKLNDGRHLAYKEFGVSK 60
M+ ++ VA LV IG IY +F KPP +ICG PNGP V+SPRIKL+DGR+LAY+E GV +
Sbjct: 1 MMFSVTVAILVCLIGYIYRSF-KPPPPRICGHPNGPPVTSPRIKLSDGRYLAYRESGVDR 60
Query: 61 EKAQYKVIVCHGLRSCKDMDLPISQELMEELKLYLVIYDRAGHCESDPYPSRSIKIDTLD 120
+ A YK+IV HG S KD + PI ++++EEL +Y V YDRAG+ ESDP+PSR++K + D
Sbjct: 61 DNANYKIIVVHGFNSSKDTEFPIPKDVIEELGIYFVFYDRAGYGESDPHPSRTVKSEAYD 120
Query: 121 IQELADKLELGKKFYVIGFSAGTYPVWGCVKYIPHRLLGAALVVPPVNFWWPSFPSALSQ 180
IQELADKL++G KFYV+G S G Y V+ C+KYIPHRL GA L+VP VN+WW P
Sbjct: 121 IQELADKLKIGPKFYVLGISLGAYSVYSCLKYIPHRLAGAVLMVPFVNYWWTKVPQEKLS 180
Query: 181 RLFTKLPQSYKRTYWIAYYTPWLMYWWMTQKWFENFNI---RRMLC-DSDLAIIKRIEEH 240
+ +P+ + T+ +A+Y PWL+YWW+TQK F + ++ LC D DL +IK+ E+
Sbjct: 181 KALELMPKKDQWTFKVAHYVPWLLYWWLTQKLFPSSSMVTGNNALCSDKDLVVIKKKMEN 240
Query: 241 PKENRCNPIQQGEYECNIRDLLCNFGKWEFDPMELSNPFHDNEGSFHMWQGCEDYVVPME 300
P+ QQG++EC RD++ F WEFDP EL NPF + EGS H+WQG ED ++P E
Sbjct: 241 PRPGLEKVRQQGDHECLHRDMIAGFATWEFDPTELENPFAEGEGSVHVWQGMEDRIIPYE 300
Query: 301 LNRFIAQKLPWIQYHELPDNGHLLVHEAHNLEVILRALL 336
+NR+I++KLPWI+YHE+ GHLL E + I++ALL
Sbjct: 301 INRYISEKLPWIKYHEVLGYGHLLNAEEEKCKDIIKALL 338
BLAST of CmaCh01G008490.1 vs. TAIR 10
Match: AT5G22460.2 (alpha/beta-Hydrolases superfamily protein ) HSP 1 Score: 376.7 bits (966), Expect = 1.9e-104 Identity = 175/339 (51.62%), Postives = 238/339 (70.21%), Query Frame = 0
Query: 1 MILTIGVAFLVSFIGLIYVAFLKPPSSKICGSPNGPRVSSPRIKLNDGRHLAYKEFGVSK 60
M+ ++ VA LV IG IY +F KPP +ICG PNGP V+SPRIKL+DGR+LAY+E GV +
Sbjct: 1 MMFSVTVAILVCLIGYIYRSF-KPPPPRICGHPNGPPVTSPRIKLSDGRYLAYRESGVDR 60
Query: 61 EKAQYKVIVCHGLRSCKDMDLPISQELMEELKLYLVIYDRAGHCESDPYPSRSIKIDTLD 120
+ A YK+IV HG S KD + PI ++++EEL +Y V YDRAG+ ESDP+PSR++K + D
Sbjct: 61 DNANYKIIVVHGFNSSKDTEFPIPKDVIEELGIYFVFYDRAGYGESDPHPSRTVKSEAYD 120
Query: 121 IQELADKLELGKKFYVIGFSAGTYPVWGCVKYIPHRLLGAALVVPPVNFWWPSFPSALSQ 180
IQELADKL++G KFYV+G S G Y V+ C+KYIPHRL GA L+VP VN+WW P
Sbjct: 121 IQELADKLKIGPKFYVLGISLGAYSVYSCLKYIPHRLAGAVLMVPFVNYWWTKVPQEKLS 180
Query: 181 RLFTKLPQSYKRTYWIAYYTPWLMYWWMTQKWFENFNI---RRMLC-DSDLAIIKRIEEH 240
+ +P+ + T+ +A+Y PWL+YWW+TQK F + ++ LC D DL +IK+ E+
Sbjct: 181 KALELMPKKDQWTFKVAHYVPWLLYWWLTQKLFPSSSMVTGNNALCSDKDLVVIKKKMEN 240
Query: 241 PKENRCNPIQQGEYECNIRDLLCNFGKWEFDPMELSNPFHDNEGSFHMWQGCEDYVVPME 300
P+ QQG++EC RD++ F WEFDP EL NPF + EGS H+WQG ED ++P E
Sbjct: 241 PRPGLEKVRQQGDHECLHRDMIAGFATWEFDPTELENPFAEGEGSVHVWQGMEDRIIPYE 300
Query: 301 LNRFIAQKLPWIQYHELPDNGHLLVHEAHNLEVILRALL 336
+NR+I++KLPWI+YHE+ GHLL E + I++ALL
Sbjct: 301 INRYISEKLPWIKYHEVLGYGHLLNAEEEKCKDIIKALL 338
BLAST of CmaCh01G008490.1 vs. TAIR 10
Match: AT3G03230.1 (alpha/beta-Hydrolases superfamily protein ) HSP 1 Score: 334.7 bits (857), Expect = 8.4e-92 Identity = 161/337 (47.77%), Postives = 226/337 (67.06%), Query Frame = 0
Query: 1 MILTIGVAFLVSFIGLIYVAFLKPPSSKICGSPNGPRVSSPRIKLNDGRHLAYKEFGVSK 60
M+L + + L+S+ +Y + PP + P SPRIKLNDGRHLAYKE G K
Sbjct: 1 MVLLLVIVGLISY--YVYKSITPPPPIPL---PENVSEISPRIKLNDGRHLAYKELGFPK 60
Query: 61 EKAQYKVIVCHGLRSCKDMDLPISQELMEELKLYLVIYDRAGHCESDPYPSRSIKIDTLD 120
+KA+ K+I+ HG + KD+DL I+QE+++E K+Y + +DRAG+ ESDP P+R++K DT D
Sbjct: 61 DKAKNKIIIVHGNGNSKDVDLYITQEMIDEFKIYFLFFDRAGYGESDPNPTRTLKTDTYD 120
Query: 121 IQELADKLELGKKFYVIGFSAGTYPVWGCVKYIPHRLLGAALVVPPVNFWWPSFPSALSQ 180
I+ELADKL++G KF+VIG S G YPV+GC+KYIP+RL GA+LVVP VNFWW P L
Sbjct: 121 IEELADKLQVGPKFHVIGMSLGAYPVYGCLKYIPNRLSGASLVVPLVNFWWSRVPQNLLN 180
Query: 181 RLFTKLPQSYKRTYWIAYYTPWLMYWWMTQKWFENF-NIRRMLCDSDLAIIKRIEEHPKE 240
KLP ++ T +A+Y+PWL+YWWMTQKWF N N + + + DL + E+H K
Sbjct: 181 AAMKKLPIGFQLTLRVAHYSPWLLYWWMTQKWFPNSRNPKDTMTERDLEL---AEKHTKH 240
Query: 241 N--RCNPIQQGEYECNIRDLLCNFGKWEFDPMELSNPFHD-NEGSFHMWQGCEDYVVPME 300
+ + + ++QG Y +D++ +G WEFDP EL NPF D N+GS HMW ED + +
Sbjct: 241 SYIKESALRQGGYVTTQQDIIAGYGNWEFDPTELKNPFSDSNKGSVHMWCALEDKQISRD 300
Query: 301 LNRFIAQKLPWIQYHELPDNGHLLVHEAHNLEVILRA 334
+ +I KLPWI+ HE+PD GH ++HE + E I++A
Sbjct: 301 VLLYICDKLPWIKLHEVPDGGHYIIHEKRHFEAIIKA 329
BLAST of CmaCh01G008490.1 vs. TAIR 10
Match: AT3G03240.1 (alpha/beta-Hydrolases superfamily protein ) HSP 1 Score: 331.3 bits (848), Expect = 9.3e-91 Identity = 160/336 (47.62%), Postives = 222/336 (66.07%), Query Frame = 0
Query: 1 MILTIGVAFLVSFIGLIYVAFLKPPSSKICGSPNGPRVSSPRIKLNDGRHLAYKEFGVSK 60
+ LT V + + +Y + PP + P SPRIKLNDGR+LAYKE G K
Sbjct: 2 LFLTAAVCLICFY---VYKSVKPPPPIPL---PENVSEISPRIKLNDGRYLAYKELGFPK 61
Query: 61 EKAQYKVIVCHGLRSCKDMDLPISQELMEELKLYLVIYDRAGHCESDPYPSRSIKIDTLD 120
+KA+ K+I+ HG S K +DL I+QE+++E ++Y +++DRAG+ ESDP+PSR++K DT D
Sbjct: 62 DKAKNKIIILHGFGSSKLVDLKITQEMIDEFEIYFLLFDRAGYGESDPHPSRTLKTDTYD 121
Query: 121 IQELADKLELGKKFYVIGFSAGTYPVWGCVKYIPHRLLGAALVVPPVNFWWPSFPSALSQ 180
I+ELADKL++G KF+V+G S G YPV+GC+KYIPHRL GA LVVP +NFWW P LS
Sbjct: 122 IEELADKLQIGPKFHVLGMSLGAYPVYGCLKYIPHRLSGATLVVPILNFWWSCLPLNLSI 181
Query: 181 RLFTKLPQSYKRTYWIAYYTPWLMYWWMTQKWFENF--NIRRMLCDSDLAIIKRIEEHPK 240
F KLP + T +A+Y PWL+YWWMTQKWF F N R + + D+ + + +H
Sbjct: 182 SAFKKLPIQNQWTLGVAHYFPWLLYWWMTQKWFSPFSQNPRETMTERDIELADKHTKHAY 241
Query: 241 ENRCNPIQQGEYECNIRDLLCNFGKWEFDPMELSNPF-HDNEGSFHMWQGCEDYVVPMEL 300
+ ++QGEY RD++ + WEFDP ELSNPF DN+GS H+W ED + E+
Sbjct: 242 IKE-SALRQGEYVSMQRDIIAGYENWEFDPTELSNPFSDDNKGSVHIWCALEDKQISHEV 301
Query: 301 NRFIAQKLPWIQYHELPDNGHLLVHEAHNLEVILRA 334
++ KLPWI+ HE+PD GHL++HE + E I++A
Sbjct: 302 LLYLCDKLPWIKLHEVPDAGHLIIHEKQHFEDIIKA 330
BLAST of CmaCh01G008490.1 vs. TAIR 10
Match: AT2G36290.1 (alpha/beta-Hydrolases superfamily protein ) HSP 1 Score: 320.1 bits (819), Expect = 2.1e-87 Identity = 150/321 (46.73%), Postives = 208/321 (64.80%), Query Frame = 0
Query: 22 LKPPSSKICGSPNGPRVSSPRIKLNDGRHLAYKEFGVSKEKAQYKVIVCHGLRSCKD--- 81
++PP SK+CGSP+GP ++ PRIKL DGR LAYKE GV +++A +K+IV HG SC+
Sbjct: 37 IQPPPSKLCGSPDGPSITGPRIKLRDGRQLAYKEHGVPRDEATHKIIVVHGSDSCRHDNA 96
Query: 82 MDLPISQELMEELKLYLVIYDRAGHCESDPYPSRSIKIDTLDIQELADKLELGKKFYVIG 141
+S ++ E L +Y+V +DR G+ ESDP P+R+ K LDI+ELAD+L LG KFYVIG
Sbjct: 97 FAALLSPDIKEGLGVYMVSFDRPGYAESDPDPNRTPKSLALDIEELADQLSLGSKFYVIG 156
Query: 142 FSAGTYPVWGCVKYIPHRLLGAALVVPPVNFWWPSFPSALSQRLFTKLPQSYKRTYWIAY 201
+S G W C+KYIPHRL G LV P VN+WW +FPS +S F + ++ + +A+
Sbjct: 157 YSMGGQATWACLKYIPHRLAGVTLVAPVVNYWWKNFPSEISTEAFNQQGRNDQWAVRVAH 216
Query: 202 YTPWLMYWWMTQKWFENFNI----RRMLCDSDLAIIKRIEEHPKENRCNPIQQGEYECNI 261
Y PWL +WW +Q WF ++ ML +D I+ ++ ++ QQG +E
Sbjct: 217 YAPWLTHWWNSQSWFPGSSVVARNLGMLSKADKEIMFKLGAARSQHEAQIRQQGTHETLH 276
Query: 262 RDLLCNFGKWEFDPMELSNPFHDNEGSFHMWQGCEDYVVPMELNRFIAQKLPWIQYHELP 321
RD++ FG WEFDPMEL N F +NEGS H+WQG +D +VP+ L R+IA+KLPWI YHE+P
Sbjct: 277 RDMIVGFGTWEFDPMELENLFPNNEGSVHLWQGDDDVLVPVTLQRYIAKKLPWIHYHEIP 336
Query: 322 DNGHLLVHEAHNLEVILRALL 336
GHL + I++ LL
Sbjct: 337 GAGHLFPFAPGMVNNIVKTLL 357
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000073 | Alpha/beta hydrolase fold-1 | PFAM | PF12697 | Abhydrolase_6 | coord: 67..329
e-value: 2.7E-10
score: 41.2 |
| IPR029058 | Alpha/Beta hydrolase fold | GENE3D | 3.40.50.1820 | alpha/beta hydrolase | coord: 36..331
e-value: 4.9E-28
score: 100.6 |
| IPR029058 | Alpha/Beta hydrolase fold | SUPERFAMILY | 53474 | alpha/beta-Hydrolases | coord: 37..331 |
| None | No IPR available | PANTHER | PTHR45763:SF21 | ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN | coord: 1..335 |
| None | No IPR available | PANTHER | PTHR45763 | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED-RELATED | coord: 1..335 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh01G008490.1:exon:919 | CmaCh01G008490.1:exon:919 | exon |
| CmaCh01G008490.1:exon:918 | CmaCh01G008490.1:exon:918 | exon |
| CmaCh01G008490.1:exon:917 | CmaCh01G008490.1:exon:917 | exon |
| CmaCh01G008490.1:exon:916 | CmaCh01G008490.1:exon:916 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh01G008490.1:cds | CmaCh01G008490.1:cds_4 | CDS |
| CmaCh01G008490.1:cds | CmaCh01G008490.1:cds_3 | CDS |
| CmaCh01G008490.1:cds | CmaCh01G008490.1:cds_2 | CDS |
| CmaCh01G008490.1:cds | CmaCh01G008490.1:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh01G008490.1 | CmaCh01G008490.1-protein | polypeptide |
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
|
