CmaCh01G008490 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G008490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionalpha/beta-Hydrolases superfamily protein
LocationCma_Chr01: 4746426 .. 4747721 (-)
RNA-Seq ExpressionCmaCh01G008490
SyntenyCmaCh01G008490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTAACCATAGGAGTTGCATTTCTAGTGAGTTTTATTGGATTGATTTATGTAGCATTTTTGAAGCCTCCATCTTCGAAAATATGTGGATCACCGAATGGCCCTCGAGTGTCTTCACCTCGAATAAAACTCAACGATGGAAGACACTTGGCCTACAAAGAATTTGGAGTTTCCAAGGAAAAGGCTCAATACAAAGTCATTGTTTGTCATGGCCTTCGTAGCTGCAAAGATATGGATTTGCCGATCTCTCAAGTGCCACATTATCGCTCATCTTTTACTCATAAATCTCTTTATTTTTGTTTATTTTTGTATACATGGCTAAAATGTATATGTTTTTAATTTTAGGAACTCATGGAGGAGCTTAAGTTGTACTTAGTAATCTACGATAGAGCGGGTCATTGTGAGAGTGACCCATATCCATCACGCTCAATAAAGATTGATACCCTCGACATTCAAGAATTAGCTGACAAGTTGGAACTCGGCAAAAAATTTTATGTAATTGGATTTTCGGCAGGAACATACCCTGTTTGGGGTTGTGTGAAATACATTCCGCATAGGTAAATTTAATTTTTGAATTTTGAAAGTTGTATTGAGTTAGTCTTTTGGTAAAAATATGTTTATAAAGTTTTTATTTGCAGACTTCTAGGAGCTGCTCTAGTTGTTCCACCCGTGAATTTTTGGTGGCCTTCTTTTCCTTCTGCTTTATCACAACGTTTATTTACGAAGCTTCCTCAATCTTATAAACGTACATATTGGATTGCATATTACACACCTTGGTTGATGTATTGGTGGATGACACAGAAATGGTTTGAAAACTTTAATATTAGAAGAATGCTGTGTGATTCTGATTTAGCCATAATAAAGAGAATTGAGGAACACCCAAAAGAGGTACTTCTCTCTAATTGATACACACTTTTAAGTTGCACATATCTTTAATCCTTCCCTAAAATTAATTTGCATTTTGTCAAATTTTTAGTAATATTTTTGTTTTTCAACTAGAATCGATGCAACCCGATCCAACAAGGAGAATATGAATGCAACATAAGAGACTTATTGTGTAATTTTGGGAAATGGGAGTTTGATCCCATGGAGTTGAGCAATCCATTTCATGATAATGAAGGCAGTTTTCATATGTGGCAAGGTTGTGAAGACTATGTAGTTCCTATGGAATTGAATCGTTTTATAGCTCAAAAGCTTCCATGGATTCAATATCATGAGCTTCCTGATAATGGGCATCTATTAGTTCATGAAGCTCATAACTTAGAAGTCATACTAAGGGCACTTCTCGGTTAA

mRNA sequence

ATGATTCTAACCATAGGAGTTGCATTTCTAGTGAGTTTTATTGGATTGATTTATGTAGCATTTTTGAAGCCTCCATCTTCGAAAATATGTGGATCACCGAATGGCCCTCGAGTGTCTTCACCTCGAATAAAACTCAACGATGGAAGACACTTGGCCTACAAAGAATTTGGAGTTTCCAAGGAAAAGGCTCAATACAAAGTCATTGTTTGTCATGGCCTTCGTAGCTGCAAAGATATGGATTTGCCGATCTCTCAAGAACTCATGGAGGAGCTTAAGTTGTACTTAGTAATCTACGATAGAGCGGGTCATTGTGAGAGTGACCCATATCCATCACGCTCAATAAAGATTGATACCCTCGACATTCAAGAATTAGCTGACAAGTTGGAACTCGGCAAAAAATTTTATGTAATTGGATTTTCGGCAGGAACATACCCTGTTTGGGGTTGTGTGAAATACATTCCGCATAGACTTCTAGGAGCTGCTCTAGTTGTTCCACCCGTGAATTTTTGGTGGCCTTCTTTTCCTTCTGCTTTATCACAACGTTTATTTACGAAGCTTCCTCAATCTTATAAACGTACATATTGGATTGCATATTACACACCTTGGTTGATGTATTGGTGGATGACACAGAAATGGTTTGAAAACTTTAATATTAGAAGAATGCTGTGTGATTCTGATTTAGCCATAATAAAGAGAATTGAGGAACACCCAAAAGAGAATCGATGCAACCCGATCCAACAAGGAGAATATGAATGCAACATAAGAGACTTATTGTGTAATTTTGGGAAATGGGAGTTTGATCCCATGGAGTTGAGCAATCCATTTCATGATAATGAAGGCAGTTTTCATATGTGGCAAGGTTGTGAAGACTATGTAGTTCCTATGGAATTGAATCGTTTTATAGCTCAAAAGCTTCCATGGATTCAATATCATGAGCTTCCTGATAATGGGCATCTATTAGTTCATGAAGCTCATAACTTAGAAGTCATACTAAGGGCACTTCTCGGTTAA

Coding sequence (CDS)

ATGATTCTAACCATAGGAGTTGCATTTCTAGTGAGTTTTATTGGATTGATTTATGTAGCATTTTTGAAGCCTCCATCTTCGAAAATATGTGGATCACCGAATGGCCCTCGAGTGTCTTCACCTCGAATAAAACTCAACGATGGAAGACACTTGGCCTACAAAGAATTTGGAGTTTCCAAGGAAAAGGCTCAATACAAAGTCATTGTTTGTCATGGCCTTCGTAGCTGCAAAGATATGGATTTGCCGATCTCTCAAGAACTCATGGAGGAGCTTAAGTTGTACTTAGTAATCTACGATAGAGCGGGTCATTGTGAGAGTGACCCATATCCATCACGCTCAATAAAGATTGATACCCTCGACATTCAAGAATTAGCTGACAAGTTGGAACTCGGCAAAAAATTTTATGTAATTGGATTTTCGGCAGGAACATACCCTGTTTGGGGTTGTGTGAAATACATTCCGCATAGACTTCTAGGAGCTGCTCTAGTTGTTCCACCCGTGAATTTTTGGTGGCCTTCTTTTCCTTCTGCTTTATCACAACGTTTATTTACGAAGCTTCCTCAATCTTATAAACGTACATATTGGATTGCATATTACACACCTTGGTTGATGTATTGGTGGATGACACAGAAATGGTTTGAAAACTTTAATATTAGAAGAATGCTGTGTGATTCTGATTTAGCCATAATAAAGAGAATTGAGGAACACCCAAAAGAGAATCGATGCAACCCGATCCAACAAGGAGAATATGAATGCAACATAAGAGACTTATTGTGTAATTTTGGGAAATGGGAGTTTGATCCCATGGAGTTGAGCAATCCATTTCATGATAATGAAGGCAGTTTTCATATGTGGCAAGGTTGTGAAGACTATGTAGTTCCTATGGAATTGAATCGTTTTATAGCTCAAAAGCTTCCATGGATTCAATATCATGAGCTTCCTGATAATGGGCATCTATTAGTTCATGAAGCTCATAACTTAGAAGTCATACTAAGGGCACTTCTCGGTTAA

Protein sequence

MILTIGVAFLVSFIGLIYVAFLKPPSSKICGSPNGPRVSSPRIKLNDGRHLAYKEFGVSKEKAQYKVIVCHGLRSCKDMDLPISQELMEELKLYLVIYDRAGHCESDPYPSRSIKIDTLDIQELADKLELGKKFYVIGFSAGTYPVWGCVKYIPHRLLGAALVVPPVNFWWPSFPSALSQRLFTKLPQSYKRTYWIAYYTPWLMYWWMTQKWFENFNIRRMLCDSDLAIIKRIEEHPKENRCNPIQQGEYECNIRDLLCNFGKWEFDPMELSNPFHDNEGSFHMWQGCEDYVVPMELNRFIAQKLPWIQYHELPDNGHLLVHEAHNLEVILRALLG
Homology
BLAST of CmaCh01G008490 vs. TAIR 10
Match: AT5G22460.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 376.7 bits (966), Expect = 1.9e-104
Identity = 175/339 (51.62%), Postives = 238/339 (70.21%), Query Frame = 0

Query: 1   MILTIGVAFLVSFIGLIYVAFLKPPSSKICGSPNGPRVSSPRIKLNDGRHLAYKEFGVSK 60
           M+ ++ VA LV  IG IY +F KPP  +ICG PNGP V+SPRIKL+DGR+LAY+E GV +
Sbjct: 1   MMFSVTVAILVCLIGYIYRSF-KPPPPRICGHPNGPPVTSPRIKLSDGRYLAYRESGVDR 60

Query: 61  EKAQYKVIVCHGLRSCKDMDLPISQELMEELKLYLVIYDRAGHCESDPYPSRSIKIDTLD 120
           + A YK+IV HG  S KD + PI ++++EEL +Y V YDRAG+ ESDP+PSR++K +  D
Sbjct: 61  DNANYKIIVVHGFNSSKDTEFPIPKDVIEELGIYFVFYDRAGYGESDPHPSRTVKSEAYD 120

Query: 121 IQELADKLELGKKFYVIGFSAGTYPVWGCVKYIPHRLLGAALVVPPVNFWWPSFPSALSQ 180
           IQELADKL++G KFYV+G S G Y V+ C+KYIPHRL GA L+VP VN+WW   P     
Sbjct: 121 IQELADKLKIGPKFYVLGISLGAYSVYSCLKYIPHRLAGAVLMVPFVNYWWTKVPQEKLS 180

Query: 181 RLFTKLPQSYKRTYWIAYYTPWLMYWWMTQKWFENFNI---RRMLC-DSDLAIIKRIEEH 240
           +    +P+  + T+ +A+Y PWL+YWW+TQK F + ++      LC D DL +IK+  E+
Sbjct: 181 KALELMPKKDQWTFKVAHYVPWLLYWWLTQKLFPSSSMVTGNNALCSDKDLVVIKKKMEN 240

Query: 241 PKENRCNPIQQGEYECNIRDLLCNFGKWEFDPMELSNPFHDNEGSFHMWQGCEDYVVPME 300
           P+       QQG++EC  RD++  F  WEFDP EL NPF + EGS H+WQG ED ++P E
Sbjct: 241 PRPGLEKVRQQGDHECLHRDMIAGFATWEFDPTELENPFAEGEGSVHVWQGMEDRIIPYE 300

Query: 301 LNRFIAQKLPWIQYHELPDNGHLLVHEAHNLEVILRALL 336
           +NR+I++KLPWI+YHE+   GHLL  E    + I++ALL
Sbjct: 301 INRYISEKLPWIKYHEVLGYGHLLNAEEEKCKDIIKALL 338

BLAST of CmaCh01G008490 vs. TAIR 10
Match: AT5G22460.2 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 376.7 bits (966), Expect = 1.9e-104
Identity = 175/339 (51.62%), Postives = 238/339 (70.21%), Query Frame = 0

Query: 1   MILTIGVAFLVSFIGLIYVAFLKPPSSKICGSPNGPRVSSPRIKLNDGRHLAYKEFGVSK 60
           M+ ++ VA LV  IG IY +F KPP  +ICG PNGP V+SPRIKL+DGR+LAY+E GV +
Sbjct: 1   MMFSVTVAILVCLIGYIYRSF-KPPPPRICGHPNGPPVTSPRIKLSDGRYLAYRESGVDR 60

Query: 61  EKAQYKVIVCHGLRSCKDMDLPISQELMEELKLYLVIYDRAGHCESDPYPSRSIKIDTLD 120
           + A YK+IV HG  S KD + PI ++++EEL +Y V YDRAG+ ESDP+PSR++K +  D
Sbjct: 61  DNANYKIIVVHGFNSSKDTEFPIPKDVIEELGIYFVFYDRAGYGESDPHPSRTVKSEAYD 120

Query: 121 IQELADKLELGKKFYVIGFSAGTYPVWGCVKYIPHRLLGAALVVPPVNFWWPSFPSALSQ 180
           IQELADKL++G KFYV+G S G Y V+ C+KYIPHRL GA L+VP VN+WW   P     
Sbjct: 121 IQELADKLKIGPKFYVLGISLGAYSVYSCLKYIPHRLAGAVLMVPFVNYWWTKVPQEKLS 180

Query: 181 RLFTKLPQSYKRTYWIAYYTPWLMYWWMTQKWFENFNI---RRMLC-DSDLAIIKRIEEH 240
           +    +P+  + T+ +A+Y PWL+YWW+TQK F + ++      LC D DL +IK+  E+
Sbjct: 181 KALELMPKKDQWTFKVAHYVPWLLYWWLTQKLFPSSSMVTGNNALCSDKDLVVIKKKMEN 240

Query: 241 PKENRCNPIQQGEYECNIRDLLCNFGKWEFDPMELSNPFHDNEGSFHMWQGCEDYVVPME 300
           P+       QQG++EC  RD++  F  WEFDP EL NPF + EGS H+WQG ED ++P E
Sbjct: 241 PRPGLEKVRQQGDHECLHRDMIAGFATWEFDPTELENPFAEGEGSVHVWQGMEDRIIPYE 300

Query: 301 LNRFIAQKLPWIQYHELPDNGHLLVHEAHNLEVILRALL 336
           +NR+I++KLPWI+YHE+   GHLL  E    + I++ALL
Sbjct: 301 INRYISEKLPWIKYHEVLGYGHLLNAEEEKCKDIIKALL 338

BLAST of CmaCh01G008490 vs. TAIR 10
Match: AT3G03230.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 334.7 bits (857), Expect = 8.4e-92
Identity = 161/337 (47.77%), Postives = 226/337 (67.06%), Query Frame = 0

Query: 1   MILTIGVAFLVSFIGLIYVAFLKPPSSKICGSPNGPRVSSPRIKLNDGRHLAYKEFGVSK 60
           M+L + +  L+S+   +Y +   PP   +   P      SPRIKLNDGRHLAYKE G  K
Sbjct: 1   MVLLLVIVGLISY--YVYKSITPPPPIPL---PENVSEISPRIKLNDGRHLAYKELGFPK 60

Query: 61  EKAQYKVIVCHGLRSCKDMDLPISQELMEELKLYLVIYDRAGHCESDPYPSRSIKIDTLD 120
           +KA+ K+I+ HG  + KD+DL I+QE+++E K+Y + +DRAG+ ESDP P+R++K DT D
Sbjct: 61  DKAKNKIIIVHGNGNSKDVDLYITQEMIDEFKIYFLFFDRAGYGESDPNPTRTLKTDTYD 120

Query: 121 IQELADKLELGKKFYVIGFSAGTYPVWGCVKYIPHRLLGAALVVPPVNFWWPSFPSALSQ 180
           I+ELADKL++G KF+VIG S G YPV+GC+KYIP+RL GA+LVVP VNFWW   P  L  
Sbjct: 121 IEELADKLQVGPKFHVIGMSLGAYPVYGCLKYIPNRLSGASLVVPLVNFWWSRVPQNLLN 180

Query: 181 RLFTKLPQSYKRTYWIAYYTPWLMYWWMTQKWFENF-NIRRMLCDSDLAIIKRIEEHPKE 240
               KLP  ++ T  +A+Y+PWL+YWWMTQKWF N  N +  + + DL +    E+H K 
Sbjct: 181 AAMKKLPIGFQLTLRVAHYSPWLLYWWMTQKWFPNSRNPKDTMTERDLEL---AEKHTKH 240

Query: 241 N--RCNPIQQGEYECNIRDLLCNFGKWEFDPMELSNPFHD-NEGSFHMWQGCEDYVVPME 300
           +  + + ++QG Y    +D++  +G WEFDP EL NPF D N+GS HMW   ED  +  +
Sbjct: 241 SYIKESALRQGGYVTTQQDIIAGYGNWEFDPTELKNPFSDSNKGSVHMWCALEDKQISRD 300

Query: 301 LNRFIAQKLPWIQYHELPDNGHLLVHEAHNLEVILRA 334
           +  +I  KLPWI+ HE+PD GH ++HE  + E I++A
Sbjct: 301 VLLYICDKLPWIKLHEVPDGGHYIIHEKRHFEAIIKA 329

BLAST of CmaCh01G008490 vs. TAIR 10
Match: AT3G03240.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 331.3 bits (848), Expect = 9.3e-91
Identity = 160/336 (47.62%), Postives = 222/336 (66.07%), Query Frame = 0

Query: 1   MILTIGVAFLVSFIGLIYVAFLKPPSSKICGSPNGPRVSSPRIKLNDGRHLAYKEFGVSK 60
           + LT  V  +  +   +Y +   PP   +   P      SPRIKLNDGR+LAYKE G  K
Sbjct: 2   LFLTAAVCLICFY---VYKSVKPPPPIPL---PENVSEISPRIKLNDGRYLAYKELGFPK 61

Query: 61  EKAQYKVIVCHGLRSCKDMDLPISQELMEELKLYLVIYDRAGHCESDPYPSRSIKIDTLD 120
           +KA+ K+I+ HG  S K +DL I+QE+++E ++Y +++DRAG+ ESDP+PSR++K DT D
Sbjct: 62  DKAKNKIIILHGFGSSKLVDLKITQEMIDEFEIYFLLFDRAGYGESDPHPSRTLKTDTYD 121

Query: 121 IQELADKLELGKKFYVIGFSAGTYPVWGCVKYIPHRLLGAALVVPPVNFWWPSFPSALSQ 180
           I+ELADKL++G KF+V+G S G YPV+GC+KYIPHRL GA LVVP +NFWW   P  LS 
Sbjct: 122 IEELADKLQIGPKFHVLGMSLGAYPVYGCLKYIPHRLSGATLVVPILNFWWSCLPLNLSI 181

Query: 181 RLFTKLPQSYKRTYWIAYYTPWLMYWWMTQKWFENF--NIRRMLCDSDLAIIKRIEEHPK 240
             F KLP   + T  +A+Y PWL+YWWMTQKWF  F  N R  + + D+ +  +  +H  
Sbjct: 182 SAFKKLPIQNQWTLGVAHYFPWLLYWWMTQKWFSPFSQNPRETMTERDIELADKHTKHAY 241

Query: 241 ENRCNPIQQGEYECNIRDLLCNFGKWEFDPMELSNPF-HDNEGSFHMWQGCEDYVVPMEL 300
               + ++QGEY    RD++  +  WEFDP ELSNPF  DN+GS H+W   ED  +  E+
Sbjct: 242 IKE-SALRQGEYVSMQRDIIAGYENWEFDPTELSNPFSDDNKGSVHIWCALEDKQISHEV 301

Query: 301 NRFIAQKLPWIQYHELPDNGHLLVHEAHNLEVILRA 334
             ++  KLPWI+ HE+PD GHL++HE  + E I++A
Sbjct: 302 LLYLCDKLPWIKLHEVPDAGHLIIHEKQHFEDIIKA 330

BLAST of CmaCh01G008490 vs. TAIR 10
Match: AT2G36290.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 320.1 bits (819), Expect = 2.1e-87
Identity = 150/321 (46.73%), Postives = 208/321 (64.80%), Query Frame = 0

Query: 22  LKPPSSKICGSPNGPRVSSPRIKLNDGRHLAYKEFGVSKEKAQYKVIVCHGLRSCKD--- 81
           ++PP SK+CGSP+GP ++ PRIKL DGR LAYKE GV +++A +K+IV HG  SC+    
Sbjct: 37  IQPPPSKLCGSPDGPSITGPRIKLRDGRQLAYKEHGVPRDEATHKIIVVHGSDSCRHDNA 96

Query: 82  MDLPISQELMEELKLYLVIYDRAGHCESDPYPSRSIKIDTLDIQELADKLELGKKFYVIG 141
               +S ++ E L +Y+V +DR G+ ESDP P+R+ K   LDI+ELAD+L LG KFYVIG
Sbjct: 97  FAALLSPDIKEGLGVYMVSFDRPGYAESDPDPNRTPKSLALDIEELADQLSLGSKFYVIG 156

Query: 142 FSAGTYPVWGCVKYIPHRLLGAALVVPPVNFWWPSFPSALSQRLFTKLPQSYKRTYWIAY 201
           +S G    W C+KYIPHRL G  LV P VN+WW +FPS +S   F +  ++ +    +A+
Sbjct: 157 YSMGGQATWACLKYIPHRLAGVTLVAPVVNYWWKNFPSEISTEAFNQQGRNDQWAVRVAH 216

Query: 202 YTPWLMYWWMTQKWFENFNI----RRMLCDSDLAIIKRIEEHPKENRCNPIQQGEYECNI 261
           Y PWL +WW +Q WF   ++      ML  +D  I+ ++     ++     QQG +E   
Sbjct: 217 YAPWLTHWWNSQSWFPGSSVVARNLGMLSKADKEIMFKLGAARSQHEAQIRQQGTHETLH 276

Query: 262 RDLLCNFGKWEFDPMELSNPFHDNEGSFHMWQGCEDYVVPMELNRFIAQKLPWIQYHELP 321
           RD++  FG WEFDPMEL N F +NEGS H+WQG +D +VP+ L R+IA+KLPWI YHE+P
Sbjct: 277 RDMIVGFGTWEFDPMELENLFPNNEGSVHLWQGDDDVLVPVTLQRYIAKKLPWIHYHEIP 336

Query: 322 DNGHLLVHEAHNLEVILRALL 336
             GHL       +  I++ LL
Sbjct: 337 GAGHLFPFAPGMVNNIVKTLL 357

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G22460.11.9e-10451.62alpha/beta-Hydrolases superfamily protein [more]
AT5G22460.21.9e-10451.62alpha/beta-Hydrolases superfamily protein [more]
AT3G03230.18.4e-9247.77alpha/beta-Hydrolases superfamily protein [more]
AT3G03240.19.3e-9147.62alpha/beta-Hydrolases superfamily protein [more]
AT2G36290.12.1e-8746.73alpha/beta-Hydrolases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000073Alpha/beta hydrolase fold-1PFAMPF12697Abhydrolase_6coord: 67..329
e-value: 2.7E-10
score: 41.2
IPR029058Alpha/Beta hydrolase foldGENE3D3.40.50.1820alpha/beta hydrolasecoord: 36..331
e-value: 4.9E-28
score: 100.6
IPR029058Alpha/Beta hydrolase foldSUPERFAMILY53474alpha/beta-Hydrolasescoord: 37..331
NoneNo IPR availablePANTHERPTHR45763:SF21ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEINcoord: 1..335
NoneNo IPR availablePANTHERPTHR45763HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED-RELATEDcoord: 1..335

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G008490.1CmaCh01G008490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane