CmaCh00G002160.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002160.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NADH-ubiquinone oxidoreductase chain 5
Location	Cma_Chr00: 15541934 .. 15542278 (+)
Sequence length	243
RNA-Seq Expression	CmaCh00G002160.1
Synteny	CmaCh00G002160.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTCTTGCCGAATCCGAGTTTGCTGCTCCAACCATTACCAAACTAATACCTATTCTGTTTAGTACTTCAGGTGCTTCTGTTGCGTATAATGTCAATCTCATAGCGAATCAATTCCAACGAGCCTTTCAAACTAGTACTTTTTGTAATCGACTTTATAGCTTCTTCAATAAACGCTGGTTCTTCGATCAAGTTTTGAATGACTTTCTAGTCAGATCGTTCCTGTGTTTCGGATATTCAGTCTCATTCTAAGCTTTAGAACAAGGTGCTATTGAGATATTGGGCCCCTATGGTATCTCGTACACATTCCGACGATTGGCTGAGCGAATCAGTCAACTTCAAA

mRNA sequence

ATGAGATTCTTGCCGAATCCGAGTGCTTCTGTTGCGTATAATGTCAATCTCATAGCGAATCAATTCCAACGAGCCTTTCAAACTAGTACTTTTTGTAATCGACTTTATAGCTTCTTCAATAAACGCTGGTTCTTCGATCAAGTTTTGAATGACTTTCTAAACAAGGTGCTATTGAGATATTGGGCCCCTATGGTATCTCGTACACATTCCGACGATTGGCTGAGCGAATCAGTCAACTTCAAA

Coding sequence (CDS)

ATGAGATTCTTGCCGAATCCGAGTGCTTCTGTTGCGTATAATGTCAATCTCATAGCGAATCAATTCCAACGAGCCTTTCAAACTAGTACTTTTTGTAATCGACTTTATAGCTTCTTCAATAAACGCTGGTTCTTCGATCAAGTTTTGAATGACTTTCTAAACAAGGTGCTATTGAGATATTGGGCCCCTATGGTATCTCGTACACATTCCGACGATTGGCTGAGCGAATCAGTCAACTTCAAA

Protein sequence

MRFLPNPSASVAYNVNLIANQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLNKVLLRYWAPMVSRTHSDDWLSESVNFK

Homology

[Close]

BLAST of CmaCh00G002160.1 vs. ExPASy Swiss-Prot
Match: Q36284 (NADH-ubiquinone oxidoreductase chain 5 (Fragment) OS=Zea mays OX=4577 GN=ND5 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.9e-19
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 9  ASVAYNVNLIANQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLNKVLLRY 61
          AS+AYNVNL+A+QFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFL +  LR+
Sbjct: 39 ASLAYNVNLVADQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLVRSFLRF 90

[Close]

BLAST of CmaCh00G002160.1 vs. ExPASy Swiss-Prot
Match: Q37680 (NADH-ubiquinone oxidoreductase chain 5 OS=Triticum aestivum OX=4565 GN=ND5 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.9e-19
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 9   ASVAYNVNLIANQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLNKVLLRY 61
           AS+AYNVNL+A+QFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFL +  LR+
Sbjct: 529 ASLAYNVNLVADQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLVRSFLRF 580

[Close]

BLAST of CmaCh00G002160.1 vs. ExPASy Swiss-Prot
Match: P10330 (NADH-ubiquinone oxidoreductase chain 5 OS=Oenothera berteroana OX=3950 GN=ND5 PE=2 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-18
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 9   ASVAYNVNLIANQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLNKVLLRY 61
           A +AYNVNL+A+QFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFL +  LR+
Sbjct: 529 AFLAYNVNLVADQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLVRSFLRF 580

[Close]

BLAST of CmaCh00G002160.1 vs. ExPASy Swiss-Prot
Match: P29388 (NADH-ubiquinone oxidoreductase chain 5 OS=Arabidopsis thaliana OX=3702 GN=ND5 PE=1 SV=3)

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-18
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 9   ASVAYNVNLIANQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLNKVLLRY 61
           A VAYNVN +A+QFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFL +  LR+
Sbjct: 529 AFVAYNVNPVADQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLVRSFLRF 580

[Close]

BLAST of CmaCh00G002160.1 vs. ExPASy Swiss-Prot
Match: P26849 (NADH-ubiquinone oxidoreductase chain 5 OS=Marchantia polymorpha OX=3197 GN=ND5 PE=3 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-10
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 11  VAYNVNLIANQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLNKVLLRY 61
           VAY+VN + N    A +TSTF NRLY FFNKRWFFD+V NDFL +  LR+
Sbjct: 534 VAYSVNFVVNPLIFALKTSTFGNRLYCFFNKRWFFDKVFNDFLARSFLRF 583

[Close]

BLAST of CmaCh00G002160.1 vs. TAIR 10
Match: ATMG00060.1 (NADH dehydrogenase subunit 5C )

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 9   ASVAYNVNLIANQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLNKVLLRY 61
           A VAYNVN +A+QFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFL +  LR+
Sbjct: 529 AFVAYNVNPVADQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLVRSFLRF 580

[Close]

BLAST of CmaCh00G002160.1 vs. TAIR 10
Match: ATMG00513.1 (NADH dehydrogenase 5A )

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 9   ASVAYNVNLIANQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLNKVLLRY 61
           A VAYNVN +A+QFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFL +  LR+
Sbjct: 529 AFVAYNVNPVADQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLVRSFLRF 580

[Close]

BLAST of CmaCh00G002160.1 vs. TAIR 10
Match: ATMG00665.1 (NADH dehydrogenase 5B )

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 9   ASVAYNVNLIANQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLNKVLLRY 61
           A VAYNVN +A+QFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFL +  LR+
Sbjct: 529 AFVAYNVNPVADQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLVRSFLRF 580

The following BLAST results are available for this feature:

BLAST of CmaCh00G002160.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q36284	2.9e-19	84.62	NADH-ubiquinone oxidoreductase chain 5 (Fragment) OS=Zea mays OX=4577 GN=ND5 PE=...	[more]
Q37680	2.9e-19	84.62	NADH-ubiquinone oxidoreductase chain 5 OS=Triticum aestivum OX=4565 GN=ND5 PE=3 ...	[more]
P10330	1.4e-18	82.69	NADH-ubiquinone oxidoreductase chain 5 OS=Oenothera berteroana OX=3950 GN=ND5 PE...	[more]
P29388	4.2e-18	82.69	NADH-ubiquinone oxidoreductase chain 5 OS=Arabidopsis thaliana OX=3702 GN=ND5 PE...	[more]
P26849	1.5e-10	62.00	NADH-ubiquinone oxidoreductase chain 5 OS=Marchantia polymorpha OX=3197 GN=ND5 P...	[more]

BLAST of CmaCh00G002160.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00060.1	3.0e-19	82.69	NADH dehydrogenase subunit 5C	[more]
ATMG00513.1	3.0e-19	82.69	NADH dehydrogenase 5A	[more]
ATMG00665.1	3.0e-19	82.69	NADH dehydrogenase 5B	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh00G002160	CmaCh00G002160	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G002160.1:exon:2016	CmaCh00G002160.1:exon:2016	exon
CmaCh00G002160.1:exon:2017	CmaCh00G002160.1:exon:2017	exon
CmaCh00G002160.1:exon:2018	CmaCh00G002160.1:exon:2018	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G002160.1:cds	CmaCh00G002160.1:cds	CDS
CmaCh00G002160.1:cds	CmaCh00G002160.1:cds_2	CDS
CmaCh00G002160.1:cds	CmaCh00G002160.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh00G002160.1	CmaCh00G002160.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0009536	plastid
cellular_component	GO:0070469	respirasome
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity