CmUC11G211140.1 (mRNA) Watermelon (USVL531) v1

Overview
NameCmUC11G211140.1
TypemRNA
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1
LocationCmU531Chr11: 7707624 .. 7709624 (+)
Sequence length606
RNA-Seq ExpressionCmUC11G211140.1
SyntenyCmUC11G211140.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGTCTGGGACATTCCCTCATGATGGAACGGCTACCTTCTTTGTGTTGTCTACTCAAGGAAAGAGCGGGATACTTAGCTGAAAGGGTGAACAAGGTCGAGCGCGTTCAAACGTTGCTCCAGAGTACCCTCTTGGGCAGCAGTCGAAGAAAAGAGCAAAGTTCAGGCAAGAAAAAAAGAATGAAATACGAATGGATTGCATTCGAAAATCAGTATACCAGTAACAATTCTAAAGAAAGCCTGAACTGGCCTCCCGAAAGTTGTCTCAAGAGAGTCCTTTACGGCCCTCTCATACATAGCCATCTCTTCCTCGGATCAGAGAAGGAAGGGTTCCTCTACAAACCATTCAAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGTATAAAAATTTGGATATTTGTAGACGAACAATAATAAGCCCTTCCGAGGAGATGAAGGTGATTCTTGTTCCAGTGAATACAACCTATTCTTTGTGACTGCTCTGCGGGCTTGACTTCCATAGTCTAAAAGGCTTGCTCCTTCCTAACCTAAAAAGAGTGTTTATCTCACTTCTTAGGCCAGTTGAACCCGCCGGTAAATGAAAGTATCGTTCTCGTCTCCATTCTTCGTCACATTGTTGGAACAAAAATTGAATATGTATCAATATGGAAATATTTGGCACATGGAGCCGTGATCTGATATATAATCTATCTTTTTTATAGAGATAGAAAATATCTTATATAGATAGAAATTGATCTTATCCCAACAACAGCAGGTCTCAGCTCTGCACATTCCTAGAAATTTGTTCTTTCTTTCAGCTAAAGATTGTTATCATCTGGTATGAGAGTCCAGGTTATGCAGATATGGTAGCGATACAATCTTCTGGATCTATAGTTGCTGATATGATTACAGCATTAACGGAAGAAGATTGTCATAAGATGCTTCTACGCATCAGACTAACTAGAGTTCATGCTTTCCTGCGTGAGACAAAGGAAGCCAATTTTCTTACTCGGCGGGAAGGTAAATGTTGGACTTTTTCTCCCTCTCAAAAGAAGGTTTATTTCAGCTATATATAGAAAAATAACAATCACATTCGGCAAAGCCTCACATCCTGTTCCTGTTGTGTTGCCTTAGACCAGGGAAGATTAGTTTCTGGTGGAAAACAAAGCTATTGATCTAGTTGAGACAGCTCAACATGGCAAAAACTCGTGCTCGAAAATAAATATACATATATATATTTTTTTATTTCATTTTCGAACATGGGTTTTTTTAGTCCAAGTGTATCTTGTTTTTACTACGAATTATTTTCCTTGGTTAACAACAGTTGTAGTTTTTCCAATATTTGCGGGTTTATTACTTTTCTTTTTCCCTCATAGAGGAAATAAAGTAATGAGCAGTTCGGGCCAAATCCTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTCGTTGGTCAGGTAAAGGCTGACCAAGCCAATAATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCTCTGTGAAACTCCTCCTTGTTCTATGATTGATCTGACCATTTTCTTTAGGCGGAAGCTGAAAAGAGACTTGAACAGCAGTCTGAAAAGACTAATGCTGCGCAAAAGAATATGTTTCTAAAAAAGAATAAGCACAAAGTGAGTGCAGAAGGACCTGAAAAACATAGATTGTCGGAACCAGAAGTCAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCTTTCGAGGAATGGGCCAGACCGGGTCATTTCTCGAGAACAATAGCTAAGGGTCCTGATACTACCACTTGGATCTGGAACCTTCATGCTGATGCTCACGATTTCGATAGCCATACTAGTGATTTGGAGGAGATCTCTCGAAAAGTATTTAGTGCCCATTTCGGCCAACTCTCCATCATCTTTCTTTGGCTGAGTGGGATGTATTTCCACGGTCCTCCTTGCGGTTAA

mRNA sequence

ATGGAGAGTCTGGGACATTCCCTCATGATGGAACGGCTACCTTCTTTGTGTTGTCTACTCAAGGAAAGAGCGGGATACTTAGCTGAAAGGGTGAACAAGGTCGAGCGCGTTCAAACGTTGCTCCAGAGTACCCTCTTGGGCAGCAGTCGAAGAAAAGAGCAAAGTTCAGGCAAGAAAAAAAGAATGAAATACGAATGGATTGCATTCGAAAATCAGTATACCAGTAACAATTCTAAAGAAAGCCTGAACTGGCCTCCCGAAAGTTGTCTCAAGAGAGTCCTTTACGGCCCTCTCATACATAGCCATCTCTTCCTCGGATCAGAGAAGGAAGGGTTCCTCTACAAACCATTCAAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGACCGGGTCATTTCTCGAGAACAATAGCTAAGGGTCCTGATACTACCACTTGGATCTGGAACCTTCATGCTGATGCTCACGATTTCGATAGCCATACTAGTGATTTGGAGGAGATCTCTCGAAAAGTATTTAGTGCCCATTTCGGCCAACTCTCCATCATCTTTCTTTGGCTGAGTGGGATGTATTTCCACGGTCCTCCTTGCGGTTAA

Coding sequence (CDS)

ATGGAGAGTCTGGGACATTCCCTCATGATGGAACGGCTACCTTCTTTGTGTTGTCTACTCAAGGAAAGAGCGGGATACTTAGCTGAAAGGGTGAACAAGGTCGAGCGCGTTCAAACGTTGCTCCAGAGTACCCTCTTGGGCAGCAGTCGAAGAAAAGAGCAAAGTTCAGGCAAGAAAAAAAGAATGAAATACGAATGGATTGCATTCGAAAATCAGTATACCAGTAACAATTCTAAAGAAAGCCTGAACTGGCCTCCCGAAAGTTGTCTCAAGAGAGTCCTTTACGGCCCTCTCATACATAGCCATCTCTTCCTCGGATCAGAGAAGGAAGGGTTCCTCTACAAACCATTCAAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGACCGGGTCATTTCTCGAGAACAATAGCTAAGGGTCCTGATACTACCACTTGGATCTGGAACCTTCATGCTGATGCTCACGATTTCGATAGCCATACTAGTGATTTGGAGGAGATCTCTCGAAAAGTATTTAGTGCCCATTTCGGCCAACTCTCCATCATCTTTCTTTGGCTGAGTGGGATGTATTTCCACGGTCCTCCTTGCGGTTAA

Protein sequence

MESLGHSLMMERLPSLCCLLKERAGYLAERVNKVERVQTLLQSTLLGSSRRKEQSSGKKKRMKYEWIAFENQYTSNNSKESLNWPPESCLKRVLYGPLIHSHLFLGSEKEGFLYKPFKLKLIIVAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGPPCG
Homology
[Close]
BLAST of CmUC11G211140.1 vs. NCBI nr
Match: YP_009915545.1 (photosystem I P700 apoprotein A1 [Cyperus rotundus] >YP_009946245.1 photosystem I P700 apoprotein A1 [Cyperus aromaticus] >YP_010045781.1 photosystem I P700 apoprotein A1 [Cyperus exaltatus] >YP_010045871.1 photosystem I P700 apoprotein A1 [Cyperus iria] >QNA49773.1 photosystem I P700 apoprotein A1 [Cyperus rotundus] >QOE56887.1 photosystem I P700 apoprotein A1 [Cyperus rotundus] >QOE57057.1 photosystem I P700 apoprotein A1 [Cyperus aromaticus] >QPG24656.1 photosystem I P700 apoprotein A1 [Cyperus exaltatus] >QPG24746.1 photosystem I P700 apoprotein A1 [Cyperus iria])

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-31
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           +   FEL   PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  IKTSFELWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. NCBI nr
Match: YP_009774940.1 (photosystem I P700 chlorophyll a apoprotein A1 [Eleocharis dulcis] >QJA14996.1 photosystem I P700 chlorophyll a apoprotein A1 [Eleocharis dulcis])

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-31
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           +   FEL   PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  IKTSFELWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. NCBI nr
Match: AFA27136.1 (photosystem I P700 apoprotein A1, partial [Cyperus alternifolius])

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-31
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           +   FEL   PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  IKTSFELWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. NCBI nr
Match: YP_009775028.1 (photosystem I P700 chlorophyll a apoprotein A1 [Eleocharis cellulosa] >QJA15084.1 photosystem I P700 chlorophyll a apoprotein A1 [Eleocharis cellulosa])

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-31
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           +   FEL   PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  IKTSFELWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. NCBI nr
Match: YP_010121403.1 (photosystem I P700 chlorophyll a apoprotein A1 [Isolepis setacea] >QRE78400.1 photosystem I P700 chlorophyll a apoprotein A1 [Isolepis setacea])

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-31
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           +   FEL   PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  IKTSFELWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. ExPASy Swiss-Prot
Match: Q3V534 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-33
Identity = 66/74 (89.19%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           +   FE    PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  IKTSFEAWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. ExPASy Swiss-Prot
Match: Q8S8X4 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Atropa belladonna OX=33113 GN=psaA PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-33
Identity = 67/74 (90.54%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           V   FE    PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  VKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. ExPASy Swiss-Prot
Match: A0A335 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica OX=13443 GN=psaA PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-33
Identity = 67/74 (90.54%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           V   FE    PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  VKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. ExPASy Swiss-Prot
Match: Q3C1H8 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Nicotiana sylvestris OX=4096 GN=psaA PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-33
Identity = 67/74 (90.54%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           V   FE    PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  VKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. ExPASy Swiss-Prot
Match: Q33C36 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Nicotiana tomentosiformis OX=4098 GN=psaA PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-33
Identity = 67/74 (90.54%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           V   FE    PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  VKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. ExPASy TrEMBL
Match: A0A7G5XUT9 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cyperus rotundus OX=512623 GN=psaA PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           +   FEL   PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  IKTSFELWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. ExPASy TrEMBL
Match: A0A6H1XHC3 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Eleocharis dulcis OX=110284 GN=psaA PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           +   FEL   PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  IKTSFELWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. ExPASy TrEMBL
Match: A0A7S9EYM5 (Photosystem I P700 apoprotein A1 OS=Cyperus exaltatus OX=1249727 GN=psaA PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           +   FEL   PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  IKTSFELWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. ExPASy TrEMBL
Match: A0A7S9EYR1 (Photosystem I P700 apoprotein A1 OS=Cyperus iria OX=388567 GN=psaA PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           +   FEL   PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  IKTSFELWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. ExPASy TrEMBL
Match: H6SZA7 (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Cyperus alternifolius OX=4611 GN=psaA PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           +   FEL   PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  IKTSFELWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 143.7 bits (361), Expect = 1.6e-34
Identity = 66/74 (89.19%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 124 VAIQFELSMGPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 183
           +   FE    PGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL
Sbjct: 19  IKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78

Query: 184 SIIFLWLSGMYFHG 198
           SIIFLWLSGMYFHG
Sbjct: 79  SIIFLWLSGMYFHG 92

[Close]
BLAST of CmUC11G211140.1 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 137 FSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYF 196
           FS+ +A+ P TT  IW   A AHDF+SH    EE + + +F++HFGQL+IIFLW SG  F
Sbjct: 8   FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLF 67

The following BLAST results are available for this feature:
BLAST of CmUC11G211140.1 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009915545.12.7e-3190.54photosystem I P700 apoprotein A1 [Cyperus rotundus] >YP_009946245.1 photosystem ... [more]
YP_009774940.12.7e-3190.54photosystem I P700 chlorophyll a apoprotein A1 [Eleocharis dulcis] >QJA14996.1 p... [more]
AFA27136.12.7e-3190.54photosystem I P700 apoprotein A1, partial [Cyperus alternifolius][more]
YP_009775028.12.7e-3190.54photosystem I P700 chlorophyll a apoprotein A1 [Eleocharis cellulosa] >QJA15084.... [more]
YP_010121403.12.7e-3190.54photosystem I P700 chlorophyll a apoprotein A1 [Isolepis setacea] >QRE78400.1 ph... [more]
BLAST of CmUC11G211140.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3V5341.4e-3389.19Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA... [more]
Q8S8X41.8e-3390.54Photosystem I P700 chlorophyll a apoprotein A1 OS=Atropa belladonna OX=33113 GN=... [more]
A0A3351.8e-3390.54Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica OX=13443 GN=psa... [more]
Q3C1H81.8e-3390.54Photosystem I P700 chlorophyll a apoprotein A1 OS=Nicotiana sylvestris OX=4096 G... [more]
Q33C361.8e-3390.54Photosystem I P700 chlorophyll a apoprotein A1 OS=Nicotiana tomentosiformis OX=4... [more]
BLAST of CmUC11G211140.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7G5XUT91.3e-3190.54Photosystem I P700 chlorophyll a apoprotein A1 OS=Cyperus rotundus OX=512623 GN=... [more]
A0A6H1XHC31.3e-3190.54Photosystem I P700 chlorophyll a apoprotein A1 OS=Eleocharis dulcis OX=110284 GN... [more]
A0A7S9EYM51.3e-3190.54Photosystem I P700 apoprotein A1 OS=Cyperus exaltatus OX=1249727 GN=psaA PE=4 SV... [more]
A0A7S9EYR11.3e-3190.54Photosystem I P700 apoprotein A1 OS=Cyperus iria OX=388567 GN=psaA PE=4 SV=1[more]
H6SZA71.3e-3190.54Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Cyperus alternifoli... [more]
BLAST of CmUC11G211140.1 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00350.11.6e-3489.19Photosystem I, PsaA/PsaB protein [more]
ATCG00340.11.4e-0952.46Photosystem I, PsaA/PsaB protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036408Photosystem I PsaA/PsaB superfamilyGENE3D1.20.1130.10Photosystem I PsaA/PsaBcoord: 118..201
e-value: 1.8E-32
score: 114.0
IPR036408Photosystem I PsaA/PsaB superfamilySUPERFAMILY81558Photosystem I subunits PsaA/PsaBcoord: 126..197
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 137..197
e-value: 1.1E-28
score: 99.9
NoneNo IPR availablePANTHERPTHR30128:SF62PHOTOSYSTEM I PSAA/PSAB-RELATEDcoord: 125..197
NoneNo IPR availablePANTHERPTHR30128OUTER MEMBRANE PROTEIN, OMPA-RELATEDcoord: 125..197

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmUC11G211140CmUC11G211140gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmUC11G211140.1-exonCmUC11G211140.1-exon-CmU531Chr11:7707624..7708021exon
CmUC11G211140.1-exonCmUC11G211140.1-exon-CmU531Chr11:7709417..7709624exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmUC11G211140.1-cdsCmUC11G211140.1-cds-CmU531Chr11:7707624..7708021CDS
CmUC11G211140.1-cdsCmUC11G211140.1-cds-CmU531Chr11:7709417..7709624CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmUC11G211140.1CmUC11G211140.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0022900 electron transport chain
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009579 thylakoid
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009522 photosystem I
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0000287 magnesium ion binding