CmUC08G143900.1 (mRNA) Watermelon (USVL531) v1

Overview
NameCmUC08G143900.1
TypemRNA
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionNADH-Ubiquinone oxidoreductase (complex I), chain 5 protein
LocationCmU531Chr08: 2432702 .. 2434567 (-)
Sequence length348
RNA-Seq ExpressionCmUC08G143900.1
SyntenyCmUC08G143900.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATACCGTTTATCTCATTTCCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTTTCCGACAGTAACCAAAAATCTTTGATGTATGTGGTTTTTTCAAGTATTTTATTGTTAAGTATAGTTATGATTTTTTCAATTTATCTGTCTATTGATCAAATAAATAGTAGTTATATCTATCAATATGTATGGTCTTGGACTATAACTAATGATTTTTCTTTAGAGTTGGGCTACTTGATCAATCCACTTACTTGCATTATGCCAATATTAATCACGACTGTTGGAATTATGGTTCTTATTTATAGTGACAATTATAAGTCTCATGATCAAGGATATTTGAGATTTTTTTGCATATATGAGTTTGTTCAATATGTCAATGTTGGGATTAGTTACTAGTTCAAATTTGATCCAAATTTATATTTTTTGGGAATTGGTTGGAATGAGTTCTTATCAATTAATAGGTTTTCGGCTCACTTGACCTACTATGACGAGGGCTTGTCAAAAGGCATTTGTAACTAATCACATAGGAGATTTTGGTTTATTATTAGGGATTTTAGGTCTTTATTGGATAATAGGGAGTTCTGAATTTCGGGATTTATTGAAAATATTCGATAACTTGAATGATAATAATGAGGTGAATTTCTTATTTGTTACTTTGTGCGTCATCCTATTATTTGCAGGTCCGGTTGCTAAATCTGCTCAATTTCCTCTTCATGTATGCTTACCTAATGCTATGAGGGTCCTACCCCTATTTCGACTCTTATACATGCTACCACAATGGTAGCAACGAGAATTTTTCTTGTCGCTCGGCTTCTTCCGCTTTTTAAAGTAATACCTTACATCATGAATCTAATAGCTTTGTTAGGTATAATAACATTACTATTGGAAACTACTTTACCTCTTGCATAAAAAGATATTAAGAGAAGTTTAGCCTACTCTACAATGTCTCAATTGGGTTATATGATGTTAGCTTTGGGTATAGGGTCTTATCGAGTTGCTTTATTTTATTTGATTACTCATGCTTACTCGAAAGTGTTGTTGTTTTTAGGATCCTAGTCAATTATTCACTCAATGGAATCCGTTGTAGGATATTCTCCAAATAAAAGTAAGAATATGGTTCTTATGGGTGGTTTAACAAAGCATGTATGCTAATTACAAAAAAAAATGCTTTTTTATTAGGTACCCTTTCTCTTTGTGGTATCCCACCCCTTGCATGCCTTTGGTCTAAGATAAAATTCTTAATGATAGTTTGTTGTATTCACCGATTTTCGCAATAATAGTCTGTTCCACAGTAGGATTAACAACATTTTATATGTTTCACATCTACTTACTTACTTTTGATGGACATTTGAACCTTTATTGTAAAAACTATAGTGGAAGCTTCTCGGTCCATCAACTGAAAGGAAGAATCACTCATGTGAATTCTACTCATATAGAAAAGTGAATCAAGTATAGATTGCATTCACTAGGGAAAGGATCATTAGATCAGCTTTAGTCAGTCAATGCGAAGGTATCTTTCATAGCTTAGTAGCACTATTGTAGCAATTCGGATAATCGTAGGCAGAAGTTCTATTTATTGTATCTTCGTTTCGATTGGTTAATAAATATTAGGTCTCACAAGAGTAGATCACATCCACCTAATAAATGAGATTTTGAGTTAGATATCTCTTGCTCAATTGTTCACTTTGCATAAACCCCCAATTTAGGTAGTCACTCCATTTCCTTGTTACCCCTTTCACCTATATAAATAAAGTACCTTACCCTCGCCATAATTCAGGTGAAGGTTCCTTGAGAACAACGATTAAAAGTTGTTTGCCTAACTTTGAAAAGAAAGAAAATAATAGACCCTCATTGGCTGTATAA

mRNA sequence

ATGGATCATACCGTTTATCTCATTTCCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTTTCCGACAGTAACCAAAAATCTTTGATGTATGTGGTTTTTTCAAGTCCGGTTGCTAAATCTGCTCAATTTCCTCTTCATGTATGCTTACCTAATGCTATGAGGGATCCTAGTCAATTATTCACTCAATGGAATCCGTTGCAGAAGTTCTATTTATTGTATCTTCGTTTCGATTGGTTAATAAATATTAGGTCTCACAAGAGTGAAGGTTCCTTGAGAACAACGATTAAAAGTTGTTTGCCTAACTTTGAAAAGAAAGAAAATAATAGACCCTCATTGGCTGTATAA

Coding sequence (CDS)

ATGGATCATACCGTTTATCTCATTTCCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTTTCCGACAGTAACCAAAAATCTTTGATGTATGTGGTTTTTTCAAGTCCGGTTGCTAAATCTGCTCAATTTCCTCTTCATGTATGCTTACCTAATGCTATGAGGGATCCTAGTCAATTATTCACTCAATGGAATCCGTTGCAGAAGTTCTATTTATTGTATCTTCGTTTCGATTGGTTAATAAATATTAGGTCTCACAAGAGTGAAGGTTCCTTGAGAACAACGATTAAAAGTTGTTTGCCTAACTTTGAAAAGAAAGAAAATAATAGACCCTCATTGGCTGTATAA

Protein sequence

MDHTVYLISNSYLNRSGTSTFSDSNQKSLMYVVFSSPVAKSAQFPLHVCLPNAMRDPSQLFTQWNPLQKFYLLYLRFDWLINIRSHKSEGSLRTTIKSCLPNFEKKENNRPSLAV
Homology
[Close]
BLAST of CmUC08G143900.1 vs. TAIR 10
Match: ATCG01010.1 (NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.9e-04
Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 0 

Query: 31  YVVFSSPVAKSAQFPLHVCLPNAMRDPSQL 61
           +++F  P+AKSAQFPLHV LP+AM  P+ +
Sbjct: 231 FLLFVGPIAKSAQFPLHVWLPDAMEGPTPI 260

The following BLAST results are available for this feature:
BLAST of CmUC08G143900.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmUC08G143900.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmUC08G143900.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmUC08G143900.1 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG01010.13.9e-0456.67NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmUC08G143900CmUC08G143900gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmUC08G143900.1-exonCmUC08G143900.1-exon-CmU531Chr08:2432702..2432787exon
CmUC08G143900.1-exonCmUC08G143900.1-exon-CmU531Chr08:2432943..2433004exon
CmUC08G143900.1-exonCmUC08G143900.1-exon-CmU531Chr08:2433482..2433516exon
CmUC08G143900.1-exonCmUC08G143900.1-exon-CmU531Chr08:2433826..2433884exon
CmUC08G143900.1-exonCmUC08G143900.1-exon-CmU531Chr08:2434462..2434567exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmUC08G143900.1-cdsCmUC08G143900.1-cds-CmU531Chr08:2432702..2432787CDS
CmUC08G143900.1-cdsCmUC08G143900.1-cds-CmU531Chr08:2432943..2433004CDS
CmUC08G143900.1-cdsCmUC08G143900.1-cds-CmU531Chr08:2433482..2433516CDS
CmUC08G143900.1-cdsCmUC08G143900.1-cds-CmU531Chr08:2433826..2433884CDS
CmUC08G143900.1-cdsCmUC08G143900.1-cds-CmU531Chr08:2434462..2434567CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmUC08G143900.1CmUC08G143900.1-proteinpolypeptide