CmUC08G143900 (gene) Watermelon (USVL531) v1

Overview
NameCmUC08G143900
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionNADH-Ubiquinone oxidoreductase (complex I), chain 5 protein
LocationCmU531Chr08: 2432702 .. 2434567 (-)
RNA-Seq ExpressionCmUC08G143900
SyntenyCmUC08G143900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATACCGTTTATCTCATTTCCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTTTCCGACAGTAACCAAAAATCTTTGATGTATGTGGTTTTTTCAAGTATTTTATTGTTAAGTATAGTTATGATTTTTTCAATTTATCTGTCTATTGATCAAATAAATAGTAGTTATATCTATCAATATGTATGGTCTTGGACTATAACTAATGATTTTTCTTTAGAGTTGGGCTACTTGATCAATCCACTTACTTGCATTATGCCAATATTAATCACGACTGTTGGAATTATGGTTCTTATTTATAGTGACAATTATAAGTCTCATGATCAAGGATATTTGAGATTTTTTTGCATATATGAGTTTGTTCAATATGTCAATGTTGGGATTAGTTACTAGTTCAAATTTGATCCAAATTTATATTTTTTGGGAATTGGTTGGAATGAGTTCTTATCAATTAATAGGTTTTCGGCTCACTTGACCTACTATGACGAGGGCTTGTCAAAAGGCATTTGTAACTAATCACATAGGAGATTTTGGTTTATTATTAGGGATTTTAGGTCTTTATTGGATAATAGGGAGTTCTGAATTTCGGGATTTATTGAAAATATTCGATAACTTGAATGATAATAATGAGGTGAATTTCTTATTTGTTACTTTGTGCGTCATCCTATTATTTGCAGGTCCGGTTGCTAAATCTGCTCAATTTCCTCTTCATGTATGCTTACCTAATGCTATGAGGGTCCTACCCCTATTTCGACTCTTATACATGCTACCACAATGGTAGCAACGAGAATTTTTCTTGTCGCTCGGCTTCTTCCGCTTTTTAAAGTAATACCTTACATCATGAATCTAATAGCTTTGTTAGGTATAATAACATTACTATTGGAAACTACTTTACCTCTTGCATAAAAAGATATTAAGAGAAGTTTAGCCTACTCTACAATGTCTCAATTGGGTTATATGATGTTAGCTTTGGGTATAGGGTCTTATCGAGTTGCTTTATTTTATTTGATTACTCATGCTTACTCGAAAGTGTTGTTGTTTTTAGGATCCTAGTCAATTATTCACTCAATGGAATCCGTTGTAGGATATTCTCCAAATAAAAGTAAGAATATGGTTCTTATGGGTGGTTTAACAAAGCATGTATGCTAATTACAAAAAAAAATGCTTTTTTATTAGGTACCCTTTCTCTTTGTGGTATCCCACCCCTTGCATGCCTTTGGTCTAAGATAAAATTCTTAATGATAGTTTGTTGTATTCACCGATTTTCGCAATAATAGTCTGTTCCACAGTAGGATTAACAACATTTTATATGTTTCACATCTACTTACTTACTTTTGATGGACATTTGAACCTTTATTGTAAAAACTATAGTGGAAGCTTCTCGGTCCATCAACTGAAAGGAAGAATCACTCATGTGAATTCTACTCATATAGAAAAGTGAATCAAGTATAGATTGCATTCACTAGGGAAAGGATCATTAGATCAGCTTTAGTCAGTCAATGCGAAGGTATCTTTCATAGCTTAGTAGCACTATTGTAGCAATTCGGATAATCGTAGGCAGAAGTTCTATTTATTGTATCTTCGTTTCGATTGGTTAATAAATATTAGGTCTCACAAGAGTAGATCACATCCACCTAATAAATGAGATTTTGAGTTAGATATCTCTTGCTCAATTGTTCACTTTGCATAAACCCCCAATTTAGGTAGTCACTCCATTTCCTTGTTACCCCTTTCACCTATATAAATAAAGTACCTTACCCTCGCCATAATTCAGGTGAAGGTTCCTTGAGAACAACGATTAAAAGTTGTTTGCCTAACTTTGAAAAGAAAGAAAATAATAGACCCTCATTGGCTGTATAA

mRNA sequence

ATGGATCATACCGTTTATCTCATTTCCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTTTCCGACAGTAACCAAAAATCTTTGATGTATGTGGTTTTTTCAAGTCCGGTTGCTAAATCTGCTCAATTTCCTCTTCATGTATGCTTACCTAATGCTATGAGGGATCCTAGTCAATTATTCACTCAATGGAATCCGTTGCAGAAGTTCTATTTATTGTATCTTCGTTTCGATTGGTTAATAAATATTAGGTCTCACAAGAGTGAAGGTTCCTTGAGAACAACGATTAAAAGTTGTTTGCCTAACTTTGAAAAGAAAGAAAATAATAGACCCTCATTGGCTGTATAA

Coding sequence (CDS)

ATGGATCATACCGTTTATCTCATTTCCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTTTCCGACAGTAACCAAAAATCTTTGATGTATGTGGTTTTTTCAAGTCCGGTTGCTAAATCTGCTCAATTTCCTCTTCATGTATGCTTACCTAATGCTATGAGGGATCCTAGTCAATTATTCACTCAATGGAATCCGTTGCAGAAGTTCTATTTATTGTATCTTCGTTTCGATTGGTTAATAAATATTAGGTCTCACAAGAGTGAAGGTTCCTTGAGAACAACGATTAAAAGTTGTTTGCCTAACTTTGAAAAGAAAGAAAATAATAGACCCTCATTGGCTGTATAA

Protein sequence

MDHTVYLISNSYLNRSGTSTFSDSNQKSLMYVVFSSPVAKSAQFPLHVCLPNAMRDPSQLFTQWNPLQKFYLLYLRFDWLINIRSHKSEGSLRTTIKSCLPNFEKKENNRPSLAV
Homology
[Close]
BLAST of CmUC08G143900 vs. TAIR 10
Match: ATCG01010.1 (NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.9e-04
Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 0 

Query: 31  YVVFSSPVAKSAQFPLHVCLPNAMRDPSQL 61
           +++F  P+AKSAQFPLHV LP+AM  P+ +
Sbjct: 231 FLLFVGPIAKSAQFPLHVWLPDAMEGPTPI 260

The following BLAST results are available for this feature:
BLAST of CmUC08G143900 vs.
Match NameE-valueIdentityDescription
BLAST of CmUC08G143900 vs.
Match NameE-valueIdentityDescription
BLAST of CmUC08G143900 vs.
Match NameE-valueIdentityDescription
BLAST of CmUC08G143900 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG01010.13.9e-0456.67NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC08G143900.1CmUC08G143900.1mRNA